Wall clock time and date at job start Wed Apr 1 2020 05:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46305 * 114.00080 * 2 1 4 4 C 1.46958 * 111.00187 * 119.99927 * 3 2 1 5 5 C 1.53049 * 109.36270 * 183.19096 * 4 3 2 6 6 N 1.46961 * 109.36259 * 301.59346 * 5 4 3 7 7 C 1.46896 * 110.99882 * 183.18951 * 6 5 4 8 8 H 1.09000 * 109.47681 * 295.03226 * 7 6 5 9 9 C 1.53009 * 109.46925 * 55.02601 * 7 6 5 10 10 C 1.50699 * 109.47408 * 175.02438 * 7 6 5 11 11 O 1.21292 * 119.99563 * 334.69166 * 10 7 6 12 12 N 1.34770 * 120.00017 * 154.96228 * 10 7 6 13 13 C 1.46497 * 120.00292 * 5.99993 * 12 10 7 14 14 C 1.50694 * 109.47347 * 95.13317 * 13 12 10 15 15 H 1.08006 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47074 * 59.99870 * 18 16 14 20 20 H 1.48498 * 109.47096 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47045 * 300.00257 * 18 16 14 22 22 C 1.39927 * 120.00166 * 185.99456 * 12 10 7 23 23 C 1.38874 * 120.06547 * 7.64537 * 22 12 10 24 24 C 1.38115 * 119.92653 * 179.76769 * 23 22 12 25 25 C 1.38280 * 120.06942 * 0.48557 * 24 23 22 26 26 C 1.38278 * 120.14278 * 359.76756 * 25 24 23 27 27 C 1.38111 * 120.07042 * 0.02562 * 26 25 24 28 28 C 1.46955 * 110.87664 * 59.32927 * 6 5 4 29 29 C 1.46957 * 111.00010 * 243.80116 * 3 2 1 30 30 H 1.09000 * 109.47022 * 299.99840 * 1 2 3 31 31 H 1.08999 * 109.46916 * 59.99865 * 1 2 3 32 32 H 1.08994 * 109.46832 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.48516 * 63.21852 * 4 3 2 34 34 H 1.08999 * 109.48467 * 303.15950 * 4 3 2 35 35 H 1.09006 * 109.48514 * 181.63431 * 5 4 3 36 36 H 1.08996 * 109.50926 * 61.57674 * 5 4 3 37 37 H 1.08998 * 109.47004 * 64.63639 * 9 7 6 38 38 H 1.09000 * 109.46798 * 184.63655 * 9 7 6 39 39 H 1.08998 * 109.47078 * 304.63157 * 9 7 6 40 40 H 1.09001 * 109.47448 * 215.13844 * 13 12 10 41 41 H 1.09005 * 109.46721 * 335.13784 * 13 12 10 42 42 H 0.97005 * 120.00352 * 179.97438 * 17 16 14 43 43 H 1.08005 * 120.03912 * 359.97438 * 23 22 12 44 44 H 1.07999 * 119.96367 * 180.25860 * 24 23 22 45 45 H 1.08006 * 119.92974 * 179.74804 * 25 24 23 46 46 H 1.08007 * 119.96599 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.03810 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.49463 * 60.63792 * 28 6 5 49 49 H 1.08994 * 109.48967 * 180.71205 * 28 6 5 50 50 H 1.08998 * 109.48757 * 296.77746 * 29 3 2 51 51 H 1.08999 * 109.49199 * 56.83869 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.8650 1.5387 1.1882 5 6 3.4032 2.9714 1.1911 6 7 4.1709 3.2061 -0.0399 7 6 4.7683 4.5481 -0.0399 8 1 3.9775 5.2979 -0.0610 9 6 5.6111 4.7312 1.2240 10 6 5.6446 4.7078 -1.2555 11 8 6.1339 3.7313 -1.7829 12 7 5.8892 5.9362 -1.7532 13 6 5.4136 7.1238 -1.0393 14 6 6.5158 7.6568 -0.1608 15 1 7.4749 7.1607 -0.1368 16 6 6.3000 8.7777 0.6126 17 7 5.1324 9.3820 0.5830 18 14 7.6665 9.4388 1.7011 19 1 8.8363 9.8021 0.8615 20 1 7.1844 10.6426 2.4248 21 1 8.0655 8.3977 2.6820 22 6 6.5974 6.0772 -2.9517 23 6 6.9108 4.9572 -3.7106 24 6 7.6058 5.1002 -4.8956 25 6 7.9982 6.3559 -5.3214 26 6 7.6922 7.4726 -4.5654 27 6 6.9938 7.3368 -3.3817 28 6 3.3300 3.0040 -1.2280 29 6 2.7917 1.5713 -1.2310 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.6988 0.8369 1.1672 34 1 2.2711 1.3714 2.0867 35 1 4.0506 3.1148 2.0563 36 1 2.5705 3.6730 1.2398 37 1 6.4502 4.0358 1.2050 38 1 5.9871 5.7534 1.2649 39 1 4.9962 4.5348 2.1023 40 1 5.1214 7.8880 -1.7596 41 1 4.5546 6.8577 -0.4233 42 1 4.9803 10.1704 1.1273 43 1 6.6085 3.9757 -3.3762 44 1 7.8462 4.2300 -5.4883 45 1 8.5451 6.4647 -6.2464 46 1 8.0004 8.4520 -4.9006 47 1 6.7554 8.2092 -2.7915 48 1 2.4961 3.7056 -1.2070 49 1 3.9238 3.1712 -2.1265 50 1 3.6247 0.8700 -1.2795 51 1 2.1444 1.4278 -2.0962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846983367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:42 Heat of formation + Delta-G solvation = 32.398189 kcal Electronic energy + Delta-G solvation = -32102.217378 eV Core-core repulsion = 28004.775488 eV Total energy + Delta-G solvation = -4097.441889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52713 -39.03383 -37.72907 -36.44810 -35.31026 -33.85686 -32.75980 -31.14519 -30.48753 -30.26447 -28.95970 -27.39373 -26.67030 -25.06622 -23.95445 -23.40870 -22.92104 -21.85225 -21.04178 -19.85613 -18.79884 -17.46329 -16.99054 -16.69267 -16.48396 -15.74842 -15.48741 -15.41028 -15.07730 -14.98146 -14.64474 -14.46167 -14.14858 -13.92613 -13.78996 -13.64487 -13.27694 -12.91433 -12.77951 -12.73238 -12.42027 -12.28892 -12.17844 -11.85767 -11.69936 -11.50893 -11.39542 -11.29120 -11.11266 -11.07499 -10.89620 -10.80759 -10.68280 -10.54154 -10.33502 -10.11565 -10.03429 -9.23617 -8.86649 -8.76620 -8.66582 -8.33557 -8.13432 -7.20505 -6.32275 -4.40531 1.86023 2.01013 2.45459 3.15888 3.17185 3.22758 3.26937 3.40342 4.03597 4.22331 4.49791 4.55637 4.85637 5.00041 5.02271 5.14274 5.19444 5.26677 5.34494 5.35230 5.40362 5.46002 5.46424 5.52738 5.54728 5.60459 5.62127 5.71629 5.74728 5.84610 5.89828 5.98128 6.07410 6.11157 6.15746 6.18740 6.29446 6.53678 6.57711 6.70813 6.78695 6.83752 6.89775 6.97713 7.04315 7.09046 7.13382 7.14349 7.28921 7.60467 7.80040 7.83885 8.08571 8.62438 8.76646 9.26767 10.73576 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.003712 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.437922 B = 7541.609852 C = 9808.695911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.268 6.268 3 N -0.365 5.365 4 C 0.047 3.953 5 C 0.058 3.942 6 N -0.522 5.522 7 C 0.076 3.924 8 H 0.072 0.928 9 C -0.151 4.151 10 C 0.523 3.477 11 O -0.524 6.524 12 N -0.536 5.536 13 C 0.227 3.773 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.171 3.829 23 C -0.174 4.174 24 C -0.110 4.110 25 C -0.162 4.162 26 C -0.106 4.106 27 C -0.142 4.142 28 C 0.058 3.942 29 C 0.049 3.951 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.268 0.732 43 H 0.170 0.830 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.140 0.860 48 H 0.042 0.958 49 H 0.094 0.906 50 H 0.057 0.943 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -10.373 -2.149 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.272 6.272 3 N -0.135 5.135 4 C -0.082 4.082 5 C -0.071 4.071 6 N -0.248 5.248 7 C -0.035 4.035 8 H 0.090 0.910 9 C -0.208 4.208 10 C 0.313 3.687 11 O -0.403 6.403 12 N -0.256 5.256 13 C 0.108 3.892 14 C -0.577 4.577 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.723 3.277 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.075 3.925 23 C -0.194 4.194 24 C -0.128 4.128 25 C -0.181 4.181 26 C -0.125 4.125 27 C -0.163 4.163 28 C -0.070 4.070 29 C -0.080 4.080 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.187 0.813 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.134 0.866 47 H 0.158 0.842 48 H 0.060 0.940 49 H 0.112 0.888 50 H 0.075 0.925 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.623 -10.924 -2.243 12.489 hybrid contribution 0.564 0.857 0.619 1.199 sum -5.059 -10.067 -1.623 11.383 Atomic orbital electron populations 1.22575 0.80946 1.01375 1.00514 1.90680 1.20569 1.19069 1.96893 1.67806 1.34381 1.07633 1.03669 1.22449 0.95838 0.96983 0.92898 1.22275 0.96366 0.94641 0.93797 1.61926 1.33219 1.27704 1.01916 1.21539 0.97058 0.89498 0.95368 0.91046 1.22005 0.99479 1.05603 0.93760 1.20417 0.81435 0.82250 0.84629 1.90345 1.50957 1.39344 1.59617 1.46042 1.50420 1.08671 1.20439 1.19741 0.95987 0.81263 0.92198 1.21302 0.99005 1.12166 1.25188 0.91770 1.24900 0.95790 0.96070 0.96633 1.69898 1.22194 1.20305 1.40037 0.86569 0.82021 0.78520 0.80573 1.19956 1.21068 1.19880 1.18040 0.94091 0.94195 0.86162 1.22438 1.01152 1.00967 0.94851 1.20987 0.98810 0.96748 0.96282 1.20968 1.03565 0.93109 1.00443 1.20871 0.98666 0.98215 0.94711 1.21158 1.00499 0.97068 0.97547 1.22222 0.95276 0.94679 0.94846 1.22417 0.96665 0.96936 0.91963 0.93849 0.93879 0.89671 0.92622 0.89639 0.88458 0.93535 0.92028 0.87925 0.91993 0.93923 0.93432 0.92221 0.81335 0.86858 0.87213 0.86563 0.84218 0.93969 0.88769 0.92476 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.51 101.05 1.16 1.57 16 2 O -0.27 -3.49 10.96 -13.93 -0.15 -3.64 16 3 N -0.37 -4.81 5.05 -113.64 -0.57 -5.38 16 4 C 0.05 0.58 6.16 -3.77 -0.02 0.55 16 5 C 0.06 0.74 5.21 -3.77 -0.02 0.72 16 6 N -0.52 -7.99 4.28 -227.88 -0.98 -8.96 16 7 C 0.08 1.30 1.68 -68.86 -0.12 1.19 16 8 H 0.07 1.26 6.24 -51.93 -0.32 0.94 16 9 C -0.15 -2.53 8.88 37.16 0.33 -2.20 16 10 C 0.52 10.30 5.79 -10.99 -0.06 10.23 16 11 O -0.52 -10.91 12.01 5.55 0.07 -10.84 16 12 N -0.54 -11.10 2.69 -114.74 -0.31 -11.41 16 13 C 0.23 5.04 4.20 -5.20 -0.02 5.02 16 14 C -0.54 -12.95 6.90 -34.44 -0.24 -13.18 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -22.75 13.29 55.43 0.74 -22.01 16 18 Si 0.90 19.54 29.54 -169.99 -5.02 14.52 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.17 3.49 6.46 -83.69 -0.54 2.95 16 23 C -0.17 -3.33 8.97 -39.39 -0.35 -3.68 16 24 C -0.11 -1.81 10.04 -39.61 -0.40 -2.21 16 25 C -0.16 -2.53 10.04 -39.55 -0.40 -2.93 16 26 C -0.11 -1.78 10.04 -39.61 -0.40 -2.17 16 27 C -0.14 -2.78 9.02 -39.39 -0.36 -3.14 16 28 C 0.06 0.85 5.29 -3.77 -0.02 0.83 16 29 C 0.05 0.65 6.16 -3.77 -0.02 0.63 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.15 5.94 -51.93 -0.31 0.84 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.99 5.85 -51.93 -0.30 1.69 16 39 H 0.06 0.87 6.00 -51.93 -0.31 0.56 16 40 H 0.04 1.01 6.88 -51.93 -0.36 0.65 16 41 H 0.05 1.07 5.65 -51.93 -0.29 0.77 16 42 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 43 H 0.17 3.36 4.73 -55.11 -0.26 3.10 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.14 2.91 6.15 -52.49 -0.32 2.59 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.09 1.51 6.32 -51.93 -0.33 1.18 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -27.15 396.43 -9.68 -36.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.85 Total: 9.13 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.57 Total: -4.20 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.12 Total: -47.76 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.09 Total: -14.49 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.15 -9.68 -36.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846983367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.221 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds