Wall clock time and date at job start Wed Apr 1 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46305 * 114.00080 * 2 1 4 4 C 1.46958 * 111.00187 * 119.99927 * 3 2 1 5 5 C 1.53049 * 109.36270 * 183.19096 * 4 3 2 6 6 N 1.46961 * 109.36259 * 301.59346 * 5 4 3 7 7 C 1.46896 * 110.99882 * 183.18951 * 6 5 4 8 8 H 1.09000 * 109.47681 * 295.03226 * 7 6 5 9 9 C 1.53009 * 109.46925 * 55.02601 * 7 6 5 10 10 C 1.50699 * 109.47408 * 175.02438 * 7 6 5 11 11 O 1.21292 * 119.99563 * 334.69166 * 10 7 6 12 12 N 1.34770 * 120.00017 * 154.96228 * 10 7 6 13 13 C 1.46497 * 120.00292 * 5.99993 * 12 10 7 14 14 C 1.50694 * 109.47347 * 95.13317 * 13 12 10 15 15 H 1.08006 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47074 * 59.99870 * 18 16 14 20 20 H 1.48498 * 109.47096 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47045 * 300.00257 * 18 16 14 22 22 C 1.39927 * 120.00166 * 185.99456 * 12 10 7 23 23 C 1.38874 * 120.06547 * 7.64537 * 22 12 10 24 24 C 1.38115 * 119.92653 * 179.76769 * 23 22 12 25 25 C 1.38280 * 120.06942 * 0.48557 * 24 23 22 26 26 C 1.38278 * 120.14278 * 359.76756 * 25 24 23 27 27 C 1.38111 * 120.07042 * 0.02562 * 26 25 24 28 28 C 1.46955 * 110.87664 * 59.32927 * 6 5 4 29 29 C 1.46957 * 111.00010 * 243.80116 * 3 2 1 30 30 H 1.09000 * 109.47022 * 299.99840 * 1 2 3 31 31 H 1.08999 * 109.46916 * 59.99865 * 1 2 3 32 32 H 1.08994 * 109.46832 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.48516 * 63.21852 * 4 3 2 34 34 H 1.08999 * 109.48467 * 303.15950 * 4 3 2 35 35 H 1.09006 * 109.48514 * 181.63431 * 5 4 3 36 36 H 1.08996 * 109.50926 * 61.57674 * 5 4 3 37 37 H 1.08998 * 109.47004 * 64.63639 * 9 7 6 38 38 H 1.09000 * 109.46798 * 184.63655 * 9 7 6 39 39 H 1.08998 * 109.47078 * 304.63157 * 9 7 6 40 40 H 1.09001 * 109.47448 * 215.13844 * 13 12 10 41 41 H 1.09005 * 109.46721 * 335.13784 * 13 12 10 42 42 H 0.97005 * 120.00352 * 179.97438 * 17 16 14 43 43 H 1.08005 * 120.03912 * 359.97438 * 23 22 12 44 44 H 1.07999 * 119.96367 * 180.25860 * 24 23 22 45 45 H 1.08006 * 119.92974 * 179.74804 * 25 24 23 46 46 H 1.08007 * 119.96599 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.03810 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.49463 * 60.63792 * 28 6 5 49 49 H 1.08994 * 109.48967 * 180.71205 * 28 6 5 50 50 H 1.08998 * 109.48757 * 296.77746 * 29 3 2 51 51 H 1.08999 * 109.49199 * 56.83869 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.8650 1.5387 1.1882 5 6 3.4032 2.9714 1.1911 6 7 4.1709 3.2061 -0.0399 7 6 4.7683 4.5481 -0.0399 8 1 3.9775 5.2979 -0.0610 9 6 5.6111 4.7312 1.2240 10 6 5.6446 4.7078 -1.2555 11 8 6.1339 3.7313 -1.7829 12 7 5.8892 5.9362 -1.7532 13 6 5.4136 7.1238 -1.0393 14 6 6.5158 7.6568 -0.1608 15 1 7.4749 7.1607 -0.1368 16 6 6.3000 8.7777 0.6126 17 7 5.1324 9.3820 0.5830 18 14 7.6665 9.4388 1.7011 19 1 8.8363 9.8021 0.8615 20 1 7.1844 10.6426 2.4248 21 1 8.0655 8.3977 2.6820 22 6 6.5974 6.0772 -2.9517 23 6 6.9108 4.9572 -3.7106 24 6 7.6058 5.1002 -4.8956 25 6 7.9982 6.3559 -5.3214 26 6 7.6922 7.4726 -4.5654 27 6 6.9938 7.3368 -3.3817 28 6 3.3300 3.0040 -1.2280 29 6 2.7917 1.5713 -1.2310 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.6988 0.8369 1.1672 34 1 2.2711 1.3714 2.0867 35 1 4.0506 3.1148 2.0563 36 1 2.5705 3.6730 1.2398 37 1 6.4502 4.0358 1.2050 38 1 5.9871 5.7534 1.2649 39 1 4.9962 4.5348 2.1023 40 1 5.1214 7.8880 -1.7596 41 1 4.5546 6.8577 -0.4233 42 1 4.9803 10.1704 1.1273 43 1 6.6085 3.9757 -3.3762 44 1 7.8462 4.2300 -5.4883 45 1 8.5451 6.4647 -6.2464 46 1 8.0004 8.4520 -4.9006 47 1 6.7554 8.2092 -2.7915 48 1 2.4961 3.7056 -1.2070 49 1 3.9238 3.1712 -2.1265 50 1 3.6247 0.8700 -1.2795 51 1 2.1444 1.4278 -2.0962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846983367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:41 Heat of formation + Delta-G solvation = 16.810595 kcal Electronic energy + Delta-G solvation = -32102.893306 eV Core-core repulsion = 28004.775488 eV Total energy + Delta-G solvation = -4098.117818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01538 -40.25715 -39.05891 -37.52105 -36.95248 -35.01078 -34.61075 -32.24487 -31.81979 -31.62776 -30.37874 -29.15666 -27.59557 -26.22250 -25.27578 -25.04475 -24.16374 -23.26969 -22.43036 -20.97766 -20.27591 -18.78602 -18.52062 -18.22080 -18.06265 -17.05329 -16.62005 -16.54886 -16.46453 -16.29517 -16.07626 -15.68353 -15.56752 -15.11299 -15.02596 -14.77334 -14.67539 -14.37859 -14.26689 -14.06489 -13.81442 -13.56704 -13.42405 -13.27818 -13.05687 -12.99680 -12.71443 -12.68221 -12.63392 -12.39029 -12.34836 -12.19323 -12.08638 -11.97177 -11.81390 -11.72859 -10.97626 -10.88220 -10.63772 -10.22666 -9.86291 -9.74415 -9.39603 -8.75376 -8.21450 -6.36254 0.43415 0.59718 1.41979 1.44009 1.50251 1.50374 1.66729 1.94303 2.39601 2.74580 3.06277 3.08266 3.41534 3.52935 3.92571 3.95922 4.02445 4.14441 4.17532 4.22307 4.22451 4.28924 4.32511 4.43848 4.52730 4.60354 4.62477 4.66135 4.67782 4.70226 4.72209 4.75119 4.78155 4.84988 4.86029 4.91645 4.94988 4.98674 5.08548 5.27561 5.36883 5.46857 5.53914 5.63083 5.66070 5.71848 5.77999 5.83222 5.95843 5.96003 5.99262 6.32932 6.45883 6.73895 7.16452 7.34002 8.82209 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.003712 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.437922 B = 7541.609852 C = 9808.695911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.283 6.283 3 N -0.369 5.369 4 C 0.051 3.949 5 C 0.058 3.942 6 N -0.529 5.529 7 C 0.084 3.916 8 H 0.064 0.936 9 C -0.143 4.143 10 C 0.518 3.482 11 O -0.539 6.539 12 N -0.542 5.542 13 C 0.246 3.754 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.913 5.913 18 Si 0.948 3.052 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.141 3.859 23 C -0.189 4.189 24 C -0.106 4.106 25 C -0.150 4.150 26 C -0.103 4.103 27 C -0.164 4.164 28 C 0.063 3.937 29 C 0.057 3.943 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.270 0.730 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.117 0.883 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.043 0.957 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -11.159 -2.486 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 N -0.139 5.139 4 C -0.078 4.078 5 C -0.070 4.070 6 N -0.255 5.255 7 C -0.027 4.027 8 H 0.082 0.918 9 C -0.200 4.200 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.262 5.262 13 C 0.126 3.874 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.168 4.168 17 N -0.551 5.551 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.193 1.193 22 C 0.046 3.954 23 C -0.209 4.209 24 C -0.124 4.124 25 C -0.169 4.169 26 C -0.122 4.122 27 C -0.184 4.184 28 C -0.065 4.065 29 C -0.072 4.072 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.175 0.825 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.161 0.839 47 H 0.135 0.865 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.061 0.939 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.398 -11.720 -2.584 13.159 hybrid contribution 0.484 1.043 0.612 1.303 sum -4.914 -10.677 -1.972 11.918 Atomic orbital electron populations 1.22799 0.79152 1.03064 1.00835 1.90666 1.22530 1.18573 1.96985 1.67808 1.34254 1.08290 1.03544 1.22456 0.95765 0.96061 0.93485 1.22370 0.96441 0.95238 0.92908 1.61936 1.34166 1.26176 1.03203 1.21412 0.96481 0.90491 0.94310 0.91844 1.21902 0.99719 1.03624 0.94768 1.20859 0.81471 0.81714 0.85075 1.90333 1.51742 1.39519 1.60208 1.46013 1.50896 1.08461 1.20858 1.19361 0.95355 0.81395 0.91308 1.21303 0.98623 1.12104 1.25290 0.93339 1.25471 0.97433 0.96230 0.97623 1.69974 1.23520 1.20748 1.40868 0.85751 0.79608 0.78111 0.79154 1.20289 1.20555 1.19332 1.18353 0.95376 0.95154 0.86565 1.22422 1.02389 0.99952 0.96126 1.21367 0.97264 0.98525 0.95251 1.21397 1.02256 0.91990 1.01230 1.21220 0.97299 1.00185 0.93486 1.21129 1.02314 0.95978 0.98999 1.22125 0.94809 0.95679 0.93930 1.22298 0.96440 0.95482 0.92955 0.93322 0.93728 0.87282 0.93580 0.87560 0.87212 0.93201 0.92496 0.90654 0.89087 0.95907 0.93840 0.92116 0.82533 0.83807 0.83157 0.83898 0.86523 0.93833 0.90684 0.93898 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.51 113.37 1.30 1.95 16 2 O -0.28 -6.93 10.96 -50.17 -0.55 -7.48 16 3 N -0.37 -9.31 5.05 -513.44 -2.59 -11.90 16 4 C 0.05 1.18 6.16 86.31 0.53 1.71 16 5 C 0.06 1.43 5.21 86.31 0.45 1.88 16 6 N -0.53 -16.26 4.28 -874.87 -3.74 -20.01 16 7 C 0.08 2.96 1.68 44.17 0.07 3.03 16 8 H 0.06 2.33 6.24 -2.39 -0.01 2.31 16 9 C -0.14 -4.83 8.88 71.99 0.64 -4.19 16 10 C 0.52 21.24 5.79 87.66 0.51 21.75 16 11 O -0.54 -23.24 12.01 -3.07 -0.04 -23.27 16 12 N -0.54 -23.57 2.69 -635.32 -1.71 -25.28 16 13 C 0.25 11.46 4.20 85.63 0.36 11.82 16 14 C -0.53 -26.63 6.90 25.60 0.18 -26.46 16 15 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 16 C 0.03 1.70 5.46 84.66 0.46 2.16 16 17 N -0.91 -47.65 13.29 21.45 0.28 -47.37 16 18 Si 0.95 40.34 29.54 68.60 2.03 42.36 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C 0.14 5.93 6.46 38.15 0.25 6.18 16 23 C -0.19 -7.28 8.97 22.39 0.20 -7.08 16 24 C -0.11 -3.28 10.04 22.25 0.22 -3.06 16 25 C -0.15 -4.25 10.04 22.29 0.22 -4.02 16 26 C -0.10 -3.32 10.04 22.25 0.22 -3.09 16 27 C -0.16 -6.55 9.02 22.39 0.20 -6.35 16 28 C 0.06 1.87 5.29 86.31 0.46 2.33 16 29 C 0.06 1.51 6.16 86.31 0.53 2.04 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 2.41 5.94 -2.38 -0.01 2.39 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.99 5.85 -2.39 -0.01 2.98 16 39 H 0.09 2.48 6.00 -2.39 -0.01 2.47 16 40 H 0.02 1.15 6.88 -2.39 -0.02 1.13 16 41 H 0.04 2.05 5.65 -2.38 -0.01 2.04 16 42 H 0.27 13.44 8.31 -92.70 -0.77 12.67 16 43 H 0.16 6.42 4.73 -44.47 -0.21 6.21 16 44 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 45 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.12 5.14 6.15 -2.91 -0.02 5.12 16 48 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 2.51 6.32 -2.39 -0.02 2.50 16 50 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -59.69 396.43 1.22 -58.46 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.73 Total: 33.88 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 6.81 Total: 0.60 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -7.76 Total: -104.55 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.59 Total: -30.75 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -59.69 1.22 -58.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846983367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.273 kcal (2) G-P(sol) polarization free energy of solvation -59.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds