Wall clock time and date at job start Wed Apr 1 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46301 * 113.99974 * 2 1 4 4 C 1.46955 * 111.00041 * 120.00327 * 3 2 1 5 5 C 1.53051 * 109.36653 * 183.18921 * 4 3 2 6 6 N 1.46961 * 109.36132 * 301.59786 * 5 4 3 7 7 C 1.46898 * 111.00196 * 183.19208 * 6 5 4 8 8 H 1.08999 * 109.47528 * 54.99179 * 7 6 5 9 9 C 1.53014 * 109.46555 * 294.99698 * 7 6 5 10 10 C 1.50692 * 109.47481 * 174.99715 * 7 6 5 11 11 O 1.21292 * 119.99838 * 10.64978 * 10 7 6 12 12 N 1.34775 * 120.00078 * 190.64911 * 10 7 6 13 13 C 1.46495 * 120.00191 * 4.77358 * 12 10 7 14 14 C 1.50695 * 109.47300 * 265.04359 * 13 12 10 15 15 H 1.07997 * 119.99900 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99963 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99806 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99911 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46840 * 90.00469 * 18 16 14 20 20 H 1.48503 * 109.47250 * 210.00288 * 18 16 14 21 21 H 1.48498 * 109.47534 * 330.00527 * 18 16 14 22 22 C 1.39928 * 119.99823 * 185.04860 * 12 10 7 23 23 C 1.38869 * 120.07231 * 352.29061 * 22 12 10 24 24 C 1.38115 * 119.92952 * 179.69689 * 23 22 12 25 25 C 1.38289 * 120.06883 * 0.57849 * 24 23 22 26 26 C 1.38280 * 120.13938 * 359.71326 * 25 24 23 27 27 C 1.38105 * 120.07201 * 359.97438 * 26 25 24 28 28 C 1.46950 * 110.88523 * 59.31566 * 6 5 4 29 29 C 1.46958 * 110.99838 * 243.79769 * 3 2 1 30 30 H 1.09002 * 109.46691 * 59.99663 * 1 2 3 31 31 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47025 * 300.00130 * 1 2 3 33 33 H 1.08998 * 109.49206 * 63.21428 * 4 3 2 34 34 H 1.09004 * 109.48537 * 303.15286 * 4 3 2 35 35 H 1.08999 * 109.49305 * 181.62760 * 5 4 3 36 36 H 1.09007 * 109.48938 * 61.55871 * 5 4 3 37 37 H 1.09000 * 109.47032 * 298.49063 * 9 7 6 38 38 H 1.08995 * 109.46898 * 58.49319 * 9 7 6 39 39 H 1.09000 * 109.46629 * 178.49406 * 9 7 6 40 40 H 1.09003 * 109.46828 * 25.04343 * 13 12 10 41 41 H 1.09006 * 109.47038 * 145.03905 * 13 12 10 42 42 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.03473 * 359.97412 * 23 22 12 44 44 H 1.08004 * 119.96603 * 180.29345 * 24 23 22 45 45 H 1.07994 * 119.92513 * 179.69986 * 25 24 23 46 46 H 1.07998 * 119.95916 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.03661 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.48604 * 60.64710 * 28 6 5 49 49 H 1.08995 * 109.49267 * 180.71472 * 28 6 5 50 50 H 1.08999 * 109.49124 * 296.78063 * 29 3 2 51 51 H 1.08999 * 109.48774 * 56.82251 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8650 1.5386 1.1881 5 6 3.4033 2.9713 1.1912 6 7 4.1708 3.2061 -0.0399 7 6 4.7685 4.5480 -0.0399 8 1 5.3685 4.6786 0.8606 9 6 3.6583 5.6006 -0.0701 10 6 5.6451 4.7075 -1.2552 11 8 5.6132 3.8776 -2.1392 12 7 6.4647 5.7723 -1.3598 13 6 6.5814 6.7189 -0.2479 14 6 5.6399 7.8742 -0.4707 15 1 5.0171 7.9009 -1.3527 16 6 5.5742 8.8977 0.4508 17 7 4.7522 9.9057 0.2566 18 14 6.6519 8.8519 1.9759 19 1 7.9437 9.5260 1.6896 20 1 5.9638 9.5530 3.0896 21 1 6.9050 7.4402 2.3610 22 6 7.1998 5.9768 -2.5328 23 6 7.2115 5.0052 -3.5249 24 6 7.9330 5.2128 -4.6842 25 6 8.6529 6.3815 -4.8524 26 6 8.6482 7.3482 -3.8637 27 6 7.9235 7.1495 -2.7049 28 6 3.3301 3.0039 -1.2280 29 6 2.7917 1.5712 -1.2310 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.6988 0.8369 1.1672 34 1 2.2711 1.3714 2.0867 35 1 4.0507 3.1148 2.0563 36 1 2.5703 3.6727 1.2396 37 1 3.0747 5.4870 -0.9837 38 1 3.0085 5.4682 0.7949 39 1 4.1010 6.5963 -0.0432 40 1 6.3258 6.2166 0.6852 41 1 7.6049 7.0898 -0.1923 42 1 4.7057 10.6256 0.9051 43 1 6.6533 4.0902 -3.3921 44 1 7.9386 4.4596 -5.4583 45 1 9.2201 6.5392 -5.7577 46 1 9.2111 8.2600 -3.9983 47 1 7.9206 7.9047 -1.9330 48 1 2.4962 3.7056 -1.2071 49 1 3.9239 3.1711 -2.1266 50 1 3.6247 0.8699 -1.2795 51 1 2.1444 1.4274 -2.0961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846983376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:46 Heat of formation + Delta-G solvation = 44.854626 kcal Electronic energy + Delta-G solvation = -32280.673160 eV Core-core repulsion = 28183.771423 eV Total energy + Delta-G solvation = -4096.901737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71092 -39.07818 -37.75853 -36.44443 -35.56608 -33.82897 -32.77958 -30.93613 -30.45919 -30.30413 -28.91656 -27.99252 -26.60069 -25.03561 -23.68373 -23.47851 -23.13797 -21.94258 -21.18235 -19.61087 -18.74584 -17.38893 -17.19584 -16.99210 -16.58482 -15.78472 -15.51302 -15.27536 -15.13792 -14.99116 -14.60276 -14.26712 -14.16497 -13.88906 -13.80700 -13.55343 -13.36551 -13.30307 -12.90538 -12.67686 -12.45642 -12.28984 -12.24155 -12.05257 -11.90340 -11.66232 -11.47906 -11.24132 -11.15945 -11.01216 -10.86910 -10.79525 -10.61914 -10.50497 -10.40042 -10.02999 -9.84322 -9.35067 -8.88239 -8.78975 -8.63815 -8.37802 -8.04221 -7.26952 -6.40149 -4.41886 1.81028 1.97403 2.50948 3.05311 3.08049 3.12411 3.15762 3.33662 4.08880 4.09980 4.43976 4.61974 4.80887 4.88251 5.08328 5.17279 5.25677 5.30811 5.37801 5.41094 5.42974 5.44842 5.49237 5.51865 5.55231 5.60810 5.67569 5.67666 5.79447 5.89232 5.94515 6.03343 6.06292 6.08701 6.19564 6.27112 6.33302 6.35536 6.42281 6.62502 6.66431 6.85200 6.92115 6.95435 6.98079 7.07517 7.14532 7.18515 7.19845 7.30631 7.73498 7.86696 8.18587 8.59509 8.66741 9.15575 10.70727 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.003843 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.445699 B = 7283.829363 C = 9529.716088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.271 6.271 3 N -0.365 5.365 4 C 0.048 3.952 5 C 0.057 3.943 6 N -0.523 5.523 7 C 0.075 3.925 8 H 0.107 0.893 9 C -0.211 4.211 10 C 0.531 3.469 11 O -0.526 6.526 12 N -0.527 5.527 13 C 0.197 3.803 14 C -0.543 4.543 15 H 0.085 0.915 16 C 0.083 3.917 17 N -0.878 5.878 18 Si 0.866 3.134 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.168 3.832 23 C -0.178 4.178 24 C -0.110 4.110 25 C -0.159 4.159 26 C -0.105 4.105 27 C -0.142 4.142 28 C 0.039 3.961 29 C 0.049 3.951 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.270 0.730 43 H 0.179 0.821 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.138 0.862 48 H 0.043 0.957 49 H 0.127 0.873 50 H 0.053 0.947 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -11.906 -0.056 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.274 6.274 3 N -0.135 5.135 4 C -0.081 4.081 5 C -0.071 4.071 6 N -0.248 5.248 7 C -0.036 4.036 8 H 0.124 0.876 9 C -0.269 4.269 10 C 0.321 3.679 11 O -0.406 6.406 12 N -0.246 5.246 13 C 0.076 3.924 14 C -0.580 4.580 15 H 0.103 0.897 16 C -0.123 4.123 17 N -0.514 5.514 18 Si 0.692 3.308 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.187 1.187 22 C 0.073 3.927 23 C -0.197 4.197 24 C -0.128 4.128 25 C -0.179 4.179 26 C -0.124 4.124 27 C -0.162 4.162 28 C -0.089 4.089 29 C -0.080 4.080 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.195 0.805 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.135 0.865 47 H 0.155 0.845 48 H 0.061 0.939 49 H 0.145 0.855 50 H 0.071 0.929 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.524 -12.375 -0.321 12.472 hybrid contribution 0.321 0.534 0.947 1.133 sum -1.202 -11.841 0.626 11.918 Atomic orbital electron populations 1.22564 0.81010 1.01296 1.00498 1.90668 1.20523 1.19341 1.96895 1.67838 1.34447 1.07410 1.03786 1.22416 0.95765 0.96899 0.92998 1.22207 0.96831 0.94747 0.93354 1.62207 1.33875 1.26454 1.02244 1.21528 0.96321 0.88569 0.97188 0.87551 1.22936 0.98283 1.04406 1.01276 1.20454 0.79420 0.79977 0.88009 1.90128 1.66629 1.42547 1.41250 1.45594 1.39211 1.24486 1.15259 1.20130 0.98774 0.89130 0.84354 1.21146 1.23361 1.03622 1.09886 0.89675 1.24839 0.94904 0.94787 0.97746 1.69873 1.35818 1.09618 1.36082 0.86997 0.81291 0.79188 0.83294 1.19639 1.20612 1.18733 1.18030 0.93301 0.94542 0.86852 1.22732 1.01807 1.02134 0.93025 1.21029 0.97340 0.97110 0.97351 1.20998 1.02211 0.95328 0.99320 1.20861 0.99222 0.98747 0.93584 1.21105 0.98891 0.96820 0.99377 1.22752 0.96054 0.93696 0.96381 1.22482 0.96353 0.97495 0.91632 0.93884 0.89744 0.93910 0.92876 0.89808 0.89452 0.93014 0.92861 0.92449 0.84741 0.93797 0.94409 0.92009 0.80497 0.86775 0.87151 0.86487 0.84472 0.93916 0.85516 0.92879 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.51 101.05 1.16 1.60 16 2 O -0.27 -3.64 10.96 -13.92 -0.15 -3.79 16 3 N -0.36 -4.98 5.05 -113.64 -0.57 -5.55 16 4 C 0.05 0.60 6.16 -3.77 -0.02 0.58 16 5 C 0.06 0.74 5.25 -3.76 -0.02 0.72 16 6 N -0.52 -7.96 4.56 -227.88 -1.04 -9.00 16 7 C 0.07 1.25 1.96 -68.86 -0.14 1.11 16 8 H 0.11 1.71 6.63 -51.93 -0.34 1.36 16 9 C -0.21 -3.67 8.33 37.16 0.31 -3.36 16 10 C 0.53 10.02 6.76 -10.99 -0.07 9.95 16 11 O -0.53 -10.21 9.93 5.55 0.06 -10.15 16 12 N -0.53 -10.43 2.69 -114.74 -0.31 -10.74 16 13 C 0.20 4.00 3.13 -5.20 -0.02 3.98 16 14 C -0.54 -12.76 6.33 -34.44 -0.22 -12.98 16 15 H 0.09 2.30 7.95 -52.49 -0.42 1.88 16 16 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.88 -23.45 13.96 55.43 0.77 -22.68 16 18 Si 0.87 18.15 27.47 -169.99 -4.67 13.48 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.26 -5.14 6.54 56.52 0.37 -4.77 16 22 C 0.17 3.31 6.47 -83.69 -0.54 2.77 16 23 C -0.18 -3.29 9.05 -39.39 -0.36 -3.65 16 24 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 25 C -0.16 -2.44 10.04 -39.55 -0.40 -2.84 16 26 C -0.11 -1.73 10.04 -39.61 -0.40 -2.12 16 27 C -0.14 -2.67 9.03 -39.39 -0.36 -3.03 16 28 C 0.04 0.59 4.72 -3.77 -0.02 0.57 16 29 C 0.05 0.68 6.16 -3.77 -0.02 0.66 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 37 H 0.05 0.94 6.54 -51.93 -0.34 0.60 16 38 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 39 H 0.13 2.77 3.96 -51.93 -0.21 2.57 16 40 H 0.04 0.85 5.05 -51.93 -0.26 0.59 16 41 H 0.04 0.76 6.27 -51.93 -0.33 0.44 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.18 3.41 4.55 -56.12 -0.26 3.15 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.14 2.70 6.15 -52.49 -0.32 2.38 16 48 H 0.04 0.67 6.50 -51.93 -0.34 0.33 16 49 H 0.13 2.15 5.03 -51.93 -0.26 1.89 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -26.86 385.14 -9.28 -36.14 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -7.57 Total: 12.77 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.60 Total: -6.28 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -1.15 Total: -47.96 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.10 Total: -13.94 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.67 Total: 13.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -26.86 -9.28 -36.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846983376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.990 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds