Wall clock time and date at job start Wed Apr 1 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.46301 * 113.99974 * 2 1 4 4 C 1.46955 * 111.00041 * 120.00327 * 3 2 1 5 5 C 1.53051 * 109.36653 * 183.18921 * 4 3 2 6 6 N 1.46961 * 109.36132 * 301.59786 * 5 4 3 7 7 C 1.46898 * 111.00196 * 183.19208 * 6 5 4 8 8 H 1.08999 * 109.47528 * 54.99179 * 7 6 5 9 9 C 1.53014 * 109.46555 * 294.99698 * 7 6 5 10 10 C 1.50692 * 109.47481 * 174.99715 * 7 6 5 11 11 O 1.21292 * 119.99838 * 10.64978 * 10 7 6 12 12 N 1.34775 * 120.00078 * 190.64911 * 10 7 6 13 13 C 1.46495 * 120.00191 * 4.77358 * 12 10 7 14 14 C 1.50695 * 109.47300 * 265.04359 * 13 12 10 15 15 H 1.07997 * 119.99900 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99963 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99806 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99911 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46840 * 90.00469 * 18 16 14 20 20 H 1.48503 * 109.47250 * 210.00288 * 18 16 14 21 21 H 1.48498 * 109.47534 * 330.00527 * 18 16 14 22 22 C 1.39928 * 119.99823 * 185.04860 * 12 10 7 23 23 C 1.38869 * 120.07231 * 352.29061 * 22 12 10 24 24 C 1.38115 * 119.92952 * 179.69689 * 23 22 12 25 25 C 1.38289 * 120.06883 * 0.57849 * 24 23 22 26 26 C 1.38280 * 120.13938 * 359.71326 * 25 24 23 27 27 C 1.38105 * 120.07201 * 359.97438 * 26 25 24 28 28 C 1.46950 * 110.88523 * 59.31566 * 6 5 4 29 29 C 1.46958 * 110.99838 * 243.79769 * 3 2 1 30 30 H 1.09002 * 109.46691 * 59.99663 * 1 2 3 31 31 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47025 * 300.00130 * 1 2 3 33 33 H 1.08998 * 109.49206 * 63.21428 * 4 3 2 34 34 H 1.09004 * 109.48537 * 303.15286 * 4 3 2 35 35 H 1.08999 * 109.49305 * 181.62760 * 5 4 3 36 36 H 1.09007 * 109.48938 * 61.55871 * 5 4 3 37 37 H 1.09000 * 109.47032 * 298.49063 * 9 7 6 38 38 H 1.08995 * 109.46898 * 58.49319 * 9 7 6 39 39 H 1.09000 * 109.46629 * 178.49406 * 9 7 6 40 40 H 1.09003 * 109.46828 * 25.04343 * 13 12 10 41 41 H 1.09006 * 109.47038 * 145.03905 * 13 12 10 42 42 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.03473 * 359.97412 * 23 22 12 44 44 H 1.08004 * 119.96603 * 180.29345 * 24 23 22 45 45 H 1.07994 * 119.92513 * 179.69986 * 25 24 23 46 46 H 1.07998 * 119.95916 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.03661 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.48604 * 60.64710 * 28 6 5 49 49 H 1.08995 * 109.49267 * 180.71472 * 28 6 5 50 50 H 1.08999 * 109.49124 * 296.78063 * 29 3 2 51 51 H 1.08999 * 109.48774 * 56.82251 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8650 1.5386 1.1881 5 6 3.4033 2.9713 1.1912 6 7 4.1708 3.2061 -0.0399 7 6 4.7685 4.5480 -0.0399 8 1 5.3685 4.6786 0.8606 9 6 3.6583 5.6006 -0.0701 10 6 5.6451 4.7075 -1.2552 11 8 5.6132 3.8776 -2.1392 12 7 6.4647 5.7723 -1.3598 13 6 6.5814 6.7189 -0.2479 14 6 5.6399 7.8742 -0.4707 15 1 5.0171 7.9009 -1.3527 16 6 5.5742 8.8977 0.4508 17 7 4.7522 9.9057 0.2566 18 14 6.6519 8.8519 1.9759 19 1 7.9437 9.5260 1.6896 20 1 5.9638 9.5530 3.0896 21 1 6.9050 7.4402 2.3610 22 6 7.1998 5.9768 -2.5328 23 6 7.2115 5.0052 -3.5249 24 6 7.9330 5.2128 -4.6842 25 6 8.6529 6.3815 -4.8524 26 6 8.6482 7.3482 -3.8637 27 6 7.9235 7.1495 -2.7049 28 6 3.3301 3.0039 -1.2280 29 6 2.7917 1.5712 -1.2310 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.6988 0.8369 1.1672 34 1 2.2711 1.3714 2.0867 35 1 4.0507 3.1148 2.0563 36 1 2.5703 3.6727 1.2396 37 1 3.0747 5.4870 -0.9837 38 1 3.0085 5.4682 0.7949 39 1 4.1010 6.5963 -0.0432 40 1 6.3258 6.2166 0.6852 41 1 7.6049 7.0898 -0.1923 42 1 4.7057 10.6256 0.9051 43 1 6.6533 4.0902 -3.3921 44 1 7.9386 4.4596 -5.4583 45 1 9.2201 6.5392 -5.7577 46 1 9.2111 8.2600 -3.9983 47 1 7.9206 7.9047 -1.9330 48 1 2.4962 3.7056 -1.2071 49 1 3.9239 3.1711 -2.1266 50 1 3.6247 0.8699 -1.2795 51 1 2.1444 1.4274 -2.0961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846983376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:45 Heat of formation + Delta-G solvation = 28.239365 kcal Electronic energy + Delta-G solvation = -32281.393652 eV Core-core repulsion = 28183.771423 eV Total energy + Delta-G solvation = -4097.622229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13540 -40.30855 -39.03747 -37.53302 -37.11480 -34.98790 -34.59212 -32.06142 -31.80377 -31.63243 -30.34941 -29.60032 -27.57401 -26.22678 -24.94970 -24.81199 -24.60669 -23.33163 -22.53736 -20.81348 -20.12076 -19.15782 -18.49828 -18.23041 -18.04809 -17.06200 -16.68961 -16.62736 -16.37413 -16.14130 -15.87434 -15.79431 -15.43370 -15.11160 -15.00212 -14.92378 -14.66060 -14.48341 -14.38007 -14.21203 -13.85886 -13.69646 -13.43488 -13.23500 -13.15077 -13.06199 -12.79232 -12.62776 -12.55806 -12.48513 -12.16507 -12.09185 -11.99849 -11.84735 -11.72137 -11.64874 -10.98143 -10.91253 -10.74786 -10.04716 -9.84031 -9.73870 -9.30358 -8.72142 -8.29701 -6.34459 0.43782 0.60926 1.40282 1.43443 1.50293 1.52645 1.62811 1.92506 2.33411 2.82038 3.02989 3.06967 3.39623 3.57952 3.94556 4.05224 4.07698 4.16114 4.18935 4.21391 4.22741 4.33634 4.34512 4.41061 4.50987 4.60786 4.62131 4.64501 4.68060 4.71179 4.73321 4.76657 4.82013 4.84149 4.85034 4.87993 4.91932 4.96723 5.05610 5.28342 5.33468 5.44842 5.54851 5.59154 5.63312 5.73299 5.79470 5.88639 6.00361 6.02220 6.13964 6.34015 6.52390 6.67730 7.12307 7.26597 8.84928 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.003843 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.445699 B = 7283.829363 C = 9529.716088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.285 6.285 3 N -0.371 5.371 4 C 0.051 3.949 5 C 0.057 3.943 6 N -0.526 5.526 7 C 0.083 3.917 8 H 0.119 0.881 9 C -0.198 4.198 10 C 0.522 3.478 11 O -0.534 6.534 12 N -0.534 5.534 13 C 0.205 3.795 14 C -0.523 4.523 15 H 0.037 0.963 16 C 0.033 3.967 17 N -0.931 5.931 18 Si 0.926 3.074 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.234 1.234 22 C 0.140 3.860 23 C -0.194 4.194 24 C -0.107 4.107 25 C -0.151 4.151 26 C -0.105 4.105 27 C -0.164 4.164 28 C 0.046 3.954 29 C 0.057 3.943 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.269 0.731 43 H 0.168 0.832 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.121 0.879 48 H 0.036 0.964 49 H 0.107 0.893 50 H 0.042 0.958 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -13.476 0.548 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.289 6.289 3 N -0.141 5.141 4 C -0.078 4.078 5 C -0.071 4.071 6 N -0.251 5.251 7 C -0.028 4.028 8 H 0.137 0.863 9 C -0.257 4.257 10 C 0.313 3.687 11 O -0.415 6.415 12 N -0.253 5.253 13 C 0.084 3.916 14 C -0.561 4.561 15 H 0.055 0.945 16 C -0.168 4.168 17 N -0.569 5.569 18 Si 0.749 3.251 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.157 1.157 22 C 0.045 3.955 23 C -0.214 4.214 24 C -0.126 4.126 25 C -0.170 4.170 26 C -0.124 4.124 27 C -0.184 4.184 28 C -0.082 4.082 29 C -0.072 4.072 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.185 0.815 44 H 0.161 0.839 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.138 0.862 48 H 0.054 0.946 49 H 0.124 0.876 50 H 0.060 0.940 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.480 -13.976 0.272 13.987 hybrid contribution -0.065 0.970 0.586 1.135 sum -0.545 -13.007 0.859 13.046 Atomic orbital electron populations 1.22783 0.79269 1.03015 1.00719 1.90652 1.22427 1.18865 1.96983 1.67837 1.34453 1.08075 1.03746 1.22446 0.95736 0.96228 0.93357 1.22326 0.96928 0.95069 0.92769 1.62231 1.34510 1.25138 1.03197 1.21450 0.95744 0.89113 0.96530 0.86347 1.22735 0.98556 1.02838 1.01533 1.20911 0.79414 0.79684 0.88696 1.90138 1.66797 1.42792 1.41741 1.45626 1.39757 1.24565 1.15357 1.19974 0.98004 0.88300 0.85348 1.21056 1.22596 1.04659 1.07763 0.94495 1.25579 0.96112 0.94214 1.00878 1.70021 1.38376 1.10885 1.37630 0.86028 0.79176 0.80668 0.79192 1.19419 1.20993 1.15732 1.18334 0.94278 0.95476 0.87405 1.22740 1.02861 1.01746 0.94011 1.21397 0.96140 0.98145 0.96902 1.21408 1.01320 0.94182 1.00056 1.21215 0.98426 1.00004 0.92717 1.21134 1.00397 0.96462 1.00410 1.22566 0.95366 0.94465 0.95776 1.22343 0.96160 0.96156 0.92533 0.93926 0.87264 0.93391 0.93524 0.87835 0.87442 0.93108 0.94064 0.90564 0.87805 0.92073 0.93780 0.92142 0.81540 0.83913 0.83379 0.83968 0.86152 0.94606 0.87569 0.93982 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 11.51 113.37 1.30 2.00 16 2 O -0.28 -7.20 10.96 -50.16 -0.55 -7.75 16 3 N -0.37 -9.66 5.05 -513.43 -2.59 -12.26 16 4 C 0.05 1.17 6.16 86.31 0.53 1.71 16 5 C 0.06 1.37 5.25 86.31 0.45 1.82 16 6 N -0.53 -15.64 4.56 -874.86 -3.99 -19.63 16 7 C 0.08 2.73 1.96 44.17 0.09 2.82 16 8 H 0.12 3.61 6.63 -2.39 -0.02 3.60 16 9 C -0.20 -7.01 8.33 71.99 0.60 -6.41 16 10 C 0.52 20.06 6.76 87.65 0.59 20.65 16 11 O -0.53 -21.30 9.93 -3.07 -0.03 -21.33 16 12 N -0.53 -21.60 2.69 -635.31 -1.71 -23.30 16 13 C 0.20 8.36 3.13 85.63 0.27 8.63 16 14 C -0.52 -25.49 6.33 25.60 0.16 -25.32 16 15 H 0.04 2.13 7.95 -2.91 -0.02 2.11 16 16 C 0.03 1.64 5.47 84.66 0.46 2.10 16 17 N -0.93 -51.64 13.96 21.45 0.30 -51.35 16 18 Si 0.93 37.04 27.47 68.60 1.88 38.92 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.23 -8.22 6.54 99.48 0.65 -7.57 16 22 C 0.14 5.62 6.47 38.15 0.25 5.87 16 23 C -0.19 -7.21 9.05 22.39 0.20 -7.00 16 24 C -0.11 -3.26 10.04 22.25 0.22 -3.04 16 25 C -0.15 -4.21 10.04 22.29 0.22 -3.98 16 26 C -0.11 -3.28 10.04 22.25 0.22 -3.06 16 27 C -0.16 -6.24 9.03 22.39 0.20 -6.04 16 28 C 0.05 1.42 4.72 86.31 0.41 1.82 16 29 C 0.06 1.56 6.16 86.31 0.53 2.09 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.11 2.17 8.12 -2.39 -0.02 2.15 16 36 H 0.05 1.25 6.56 -2.38 -0.02 1.24 16 37 H 0.04 1.52 6.54 -2.39 -0.02 1.50 16 38 H 0.08 2.35 6.52 -2.39 -0.02 2.34 16 39 H 0.10 4.42 3.96 -2.39 -0.01 4.41 16 40 H 0.06 2.29 5.05 -2.39 -0.01 2.28 16 41 H 0.04 1.76 6.27 -2.38 -0.01 1.75 16 42 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 43 H 0.17 6.54 4.55 -60.43 -0.28 6.26 16 44 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 45 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.12 4.90 6.15 -2.91 -0.02 4.88 16 48 H 0.04 1.14 6.50 -2.39 -0.02 1.12 16 49 H 0.11 3.73 5.03 -2.39 -0.01 3.71 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 51 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -60.79 385.14 0.66 -60.14 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.63 Total: 41.89 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 6.72 Total: -5.34 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -7.99 Total: -106.54 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.58 Total: -29.08 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 1.88 Total: 38.92 kcal Total: -60.79 0.66 -60.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846983376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.374 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds