Wall clock time and date at job start Wed Apr 1 2020 04:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47707 * 119.99860 * 2 1 3 5 5 O 1.42901 * 109.46653 * 55.00028 * 4 2 1 6 6 C 1.35898 * 116.99775 * 180.02562 * 5 4 2 7 7 C 1.38734 * 120.05782 * 359.71926 * 6 5 4 8 8 C 1.38146 * 119.94805 * 179.74635 * 7 6 5 9 9 C 1.38262 * 120.05050 * 0.51228 * 8 7 6 10 10 C 1.38269 * 120.11581 * 359.76943 * 9 8 7 11 11 C 1.38147 * 120.05400 * 359.97097 * 10 9 8 12 12 N 1.46504 * 109.47218 * 240.00420 * 2 1 3 13 13 C 1.34769 * 120.00303 * 84.99254 * 12 2 1 14 14 O 1.21590 * 120.00304 * 4.98479 * 13 12 2 15 15 N 1.34775 * 120.00266 * 184.98422 * 13 12 2 16 16 C 1.47084 * 120.88582 * 174.49704 * 15 13 12 17 17 C 1.53700 * 108.27476 * 128.75316 * 16 15 13 18 18 N 1.46908 * 109.25575 * 54.08735 * 17 16 15 19 19 C 1.46896 * 111.00187 * 172.60429 * 18 17 16 20 20 C 1.50702 * 109.47174 * 294.30376 * 19 18 17 21 21 H 1.08008 * 119.99851 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00055 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99998 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00062 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46899 * 89.99902 * 24 22 20 26 26 H 1.48494 * 109.47228 * 209.99919 * 24 22 20 27 27 H 1.48501 * 109.47027 * 330.00466 * 24 22 20 28 28 C 1.46903 * 111.26800 * 296.75584 * 18 17 16 29 29 C 1.47088 * 120.87925 * 354.78020 * 15 13 12 30 30 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47290 * 299.99741 * 1 2 3 32 32 H 1.09003 * 109.47746 * 59.99934 * 1 2 3 33 33 H 1.08998 * 109.47207 * 174.99506 * 4 2 1 34 34 H 1.08997 * 109.46814 * 295.00355 * 4 2 1 35 35 H 1.08007 * 120.02224 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.97278 * 180.28017 * 8 7 6 37 37 H 1.08005 * 119.94640 * 179.74628 * 9 8 7 38 38 H 1.08005 * 119.97475 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.02808 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99420 * 264.99981 * 12 2 1 41 41 H 1.08994 * 109.63043 * 248.52621 * 16 15 13 42 42 H 1.09001 * 109.62240 * 9.10854 * 16 15 13 43 43 H 1.08998 * 109.65296 * 294.08665 * 17 16 15 44 44 H 1.08992 * 109.44229 * 173.96247 * 17 16 15 45 45 H 1.09003 * 109.46847 * 54.30075 * 19 18 17 46 46 H 1.08995 * 109.47476 * 174.30231 * 19 18 17 47 47 H 0.96991 * 120.00080 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.48861 * 303.14473 * 28 18 17 49 49 H 1.08996 * 109.49134 * 183.06509 * 28 18 17 50 50 H 1.09000 * 109.62882 * 350.89330 * 29 15 13 51 51 H 1.08996 * 109.62899 * 111.47926 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4703 -2.0303 1.3094 6 6 1.8228 -2.8086 2.3663 7 6 2.7035 -2.3244 3.3226 8 6 3.0562 -3.1155 4.3987 9 6 2.5404 -4.3928 4.5176 10 6 1.6670 -4.8799 3.5628 11 6 1.3070 -4.0907 2.4876 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.9448 1.1803 -2.3913 15 7 2.4995 -0.6743 -3.4804 16 6 2.5289 0.0147 -4.7795 17 6 3.8941 -0.2494 -5.4343 18 7 4.1303 -1.6981 -5.4948 19 6 5.3409 -2.0023 -6.2692 20 6 5.1299 -1.6057 -7.7077 21 1 4.1902 -1.1714 -8.0159 22 6 6.1364 -1.7971 -8.6304 23 7 5.9521 -1.4515 -9.8858 24 14 7.7619 -2.5475 -8.0972 25 1 7.6939 -4.0246 -8.2347 26 1 8.8548 -2.0205 -8.9533 27 1 8.0290 -2.1941 -6.6798 28 6 4.2056 -2.2824 -4.1490 29 6 2.8591 -2.1000 -3.4406 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 3.1096 -1.3281 3.2281 36 1 3.7383 -2.7374 5.1458 37 1 2.8205 -5.0114 5.3575 38 1 1.2657 -5.8782 3.6577 39 1 0.6251 -4.4718 1.7419 40 1 2.2490 -1.6317 -1.1527 41 1 1.7330 -0.3709 -5.4166 42 1 2.3947 1.0859 -4.6289 43 1 4.6805 0.2230 -4.8457 44 1 3.8981 0.1621 -6.4436 45 1 6.1839 -1.4463 -5.8589 46 1 5.5489 -3.0708 -6.2137 47 1 6.6603 -1.5858 -10.5348 48 1 4.9876 -1.7815 -3.5783 49 1 4.4350 -3.3451 -4.2262 50 1 2.9432 -2.4276 -2.4044 51 1 2.0943 -2.6849 -3.9515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875125167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:40 Heat of formation + Delta-G solvation = -19.500759 kcal Electronic energy + Delta-G solvation = -30418.973412 eV Core-core repulsion = 26319.281016 eV Total energy + Delta-G solvation = -4099.692396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72924 -40.16051 -38.23402 -37.60394 -35.50068 -34.49560 -32.43107 -31.68559 -31.31631 -30.49910 -29.96590 -28.49635 -27.25652 -25.65759 -23.57575 -23.13025 -22.73599 -22.05050 -21.20997 -20.46500 -19.48722 -18.66210 -18.00921 -16.96324 -16.72484 -16.39806 -16.12658 -15.83014 -15.45194 -14.96329 -14.75956 -14.58521 -14.47278 -14.19432 -14.09673 -13.82645 -13.68549 -13.58288 -13.45022 -13.14238 -12.90362 -12.54110 -12.47780 -12.23470 -11.99187 -11.95546 -11.59853 -11.42655 -11.38905 -11.21951 -11.16678 -10.93918 -10.78025 -10.55361 -10.36431 -10.01194 -9.89705 -9.41542 -9.33903 -9.24320 -8.61029 -8.60559 -8.39446 -7.46195 -6.08630 -4.06540 0.92878 1.04602 2.60256 2.76227 3.25362 3.26543 3.33388 3.34612 3.39184 3.85284 4.21830 4.38496 4.43464 4.52122 4.55990 4.60882 4.71441 4.79093 4.98001 4.98578 5.09541 5.14455 5.18902 5.21283 5.27652 5.30403 5.36344 5.46533 5.58990 5.59528 5.71321 5.77192 5.88396 5.88854 5.97513 5.99447 6.06916 6.08482 6.13490 6.34109 6.36340 6.42680 6.50191 6.60212 6.80722 6.92839 6.99417 7.03178 7.52542 7.79538 7.94976 7.98818 8.60127 8.63842 8.99198 9.52611 11.04247 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.002156 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.352673 B =12981.901947 C =14454.884616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.166 3.834 3 H 0.107 0.893 4 C 0.050 3.950 5 O -0.310 6.310 6 C 0.131 3.869 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.161 4.161 10 C -0.081 4.081 11 C -0.152 4.152 12 N -0.745 5.745 13 C 0.709 3.291 14 O -0.596 6.596 15 N -0.625 5.625 16 C 0.133 3.867 17 C 0.050 3.950 18 N -0.526 5.526 19 C 0.163 3.837 20 C -0.511 4.511 21 H 0.082 0.918 22 C 0.069 3.931 23 N -0.898 5.898 24 Si 0.875 3.125 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.269 1.269 28 C 0.038 3.962 29 C 0.119 3.881 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.103 0.897 45 H -0.012 1.012 46 H 0.025 0.975 47 H 0.264 0.736 48 H 0.026 0.974 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 -3.610 29.920 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.125 0.875 4 C -0.025 4.025 5 O -0.223 6.223 6 C 0.086 3.914 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.179 4.179 10 C -0.099 4.099 11 C -0.171 4.171 12 N -0.403 5.403 13 C 0.410 3.590 14 O -0.475 6.475 15 N -0.362 5.362 16 C 0.010 3.990 17 C -0.079 4.079 18 N -0.250 5.250 19 C 0.037 3.963 20 C -0.549 4.549 21 H 0.100 0.900 22 C -0.133 4.133 23 N -0.537 5.537 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.194 1.194 28 C -0.092 4.092 29 C -0.004 4.004 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.236 0.764 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.043 0.957 44 H 0.121 0.879 45 H 0.006 0.994 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.701 -2.965 29.290 30.996 hybrid contribution 2.025 -0.525 0.738 2.219 sum -7.676 -3.490 30.027 31.189 Atomic orbital electron populations 1.22131 0.94546 1.02897 1.02470 1.20856 0.95067 0.96540 0.81459 0.87505 1.23218 0.98370 0.82005 0.98948 1.86084 1.67176 1.26199 1.42855 1.19029 0.94120 0.91146 0.87105 1.21295 1.02677 1.01756 0.97145 1.20969 0.98232 0.93915 0.96776 1.21088 1.00036 0.96416 1.00371 1.21003 0.96436 0.99312 0.93157 1.20488 1.03818 0.92185 1.00565 1.45303 1.72192 1.14030 1.08813 1.15815 0.77922 0.84954 0.80261 1.90886 1.59028 1.12636 1.84940 1.47421 1.70856 1.10912 1.07007 1.21843 0.98213 0.97767 0.81152 1.22488 0.94411 0.89199 1.01786 1.61896 1.40571 1.11305 1.11252 1.20174 0.85941 0.95800 0.94406 1.21010 1.02223 1.41414 0.90284 0.90000 1.24900 0.98320 0.95281 0.94810 1.69886 1.33670 1.48077 1.02066 0.86865 0.84120 0.79885 0.78887 1.20137 1.21185 1.19376 1.22430 0.94983 1.00487 0.91251 1.21736 0.97690 0.81514 0.99506 0.91595 0.91848 0.91704 0.91151 0.90330 0.85496 0.85853 0.85965 0.85360 0.85114 0.76439 0.90920 0.89111 0.95661 0.87934 0.99400 0.95687 0.92611 0.95535 0.90096 0.91183 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.29 37.15 0.34 -1.13 16 2 C 0.17 1.55 3.02 -67.93 -0.21 1.34 16 3 H 0.11 1.09 7.51 -51.93 -0.39 0.70 16 4 C 0.05 0.36 4.48 37.16 0.17 0.53 16 5 O -0.31 -2.65 8.99 -19.42 -0.17 -2.82 16 6 C 0.13 1.11 6.69 -39.22 -0.26 0.85 16 7 C -0.21 -1.57 9.04 -39.43 -0.36 -1.93 16 8 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 9 C -0.16 -1.06 10.04 -39.56 -0.40 -1.45 16 10 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 11 C -0.15 -1.20 9.99 -39.43 -0.39 -1.60 16 12 N -0.74 -8.37 4.97 -58.68 -0.29 -8.67 16 13 C 0.71 10.65 8.27 -86.93 -0.72 9.93 16 14 O -0.60 -10.85 15.43 5.29 0.08 -10.76 16 15 N -0.63 -9.40 3.00 -177.90 -0.53 -9.93 16 16 C 0.13 2.19 6.64 -3.36 -0.02 2.17 16 17 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 18 N -0.53 -10.54 4.62 -235.46 -1.09 -11.63 16 19 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 20 C -0.51 -14.17 8.96 -34.44 -0.31 -14.48 16 21 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 24 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 28 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 29 C 0.12 1.56 6.53 -3.60 -0.02 1.53 16 30 H 0.06 0.62 7.56 -51.93 -0.39 0.22 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.48 7.65 -51.93 -0.40 0.08 16 34 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 35 H 0.13 0.76 6.30 -52.48 -0.33 0.43 16 36 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.40 3.96 5.92 -40.82 -0.24 3.72 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.15 6.67 -51.93 -0.35 1.81 16 45 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 46 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 50 H 0.07 0.71 5.74 -51.93 -0.30 0.41 16 51 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -33.18 403.97 -11.06 -44.24 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.11 Total: 2.23 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.13 Total: 1.09 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -1.14 Total: -56.60 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.18 -11.06 -44.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875125167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.736 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds