Wall clock time and date at job start Wed Apr 1 2020 04:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47707 * 119.99860 * 2 1 3 5 5 O 1.42901 * 109.46653 * 55.00028 * 4 2 1 6 6 C 1.35898 * 116.99775 * 180.02562 * 5 4 2 7 7 C 1.38734 * 120.05782 * 359.71926 * 6 5 4 8 8 C 1.38146 * 119.94805 * 179.74635 * 7 6 5 9 9 C 1.38262 * 120.05050 * 0.51228 * 8 7 6 10 10 C 1.38269 * 120.11581 * 359.76943 * 9 8 7 11 11 C 1.38147 * 120.05400 * 359.97097 * 10 9 8 12 12 N 1.46504 * 109.47218 * 240.00420 * 2 1 3 13 13 C 1.34769 * 120.00303 * 84.99254 * 12 2 1 14 14 O 1.21590 * 120.00304 * 4.98479 * 13 12 2 15 15 N 1.34775 * 120.00266 * 184.98422 * 13 12 2 16 16 C 1.47084 * 120.88582 * 174.49704 * 15 13 12 17 17 C 1.53700 * 108.27476 * 128.75316 * 16 15 13 18 18 N 1.46908 * 109.25575 * 54.08735 * 17 16 15 19 19 C 1.46896 * 111.00187 * 172.60429 * 18 17 16 20 20 C 1.50702 * 109.47174 * 294.30376 * 19 18 17 21 21 H 1.08008 * 119.99851 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00055 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99998 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00062 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46899 * 89.99902 * 24 22 20 26 26 H 1.48494 * 109.47228 * 209.99919 * 24 22 20 27 27 H 1.48501 * 109.47027 * 330.00466 * 24 22 20 28 28 C 1.46903 * 111.26800 * 296.75584 * 18 17 16 29 29 C 1.47088 * 120.87925 * 354.78020 * 15 13 12 30 30 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47290 * 299.99741 * 1 2 3 32 32 H 1.09003 * 109.47746 * 59.99934 * 1 2 3 33 33 H 1.08998 * 109.47207 * 174.99506 * 4 2 1 34 34 H 1.08997 * 109.46814 * 295.00355 * 4 2 1 35 35 H 1.08007 * 120.02224 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.97278 * 180.28017 * 8 7 6 37 37 H 1.08005 * 119.94640 * 179.74628 * 9 8 7 38 38 H 1.08005 * 119.97475 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.02808 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99420 * 264.99981 * 12 2 1 41 41 H 1.08994 * 109.63043 * 248.52621 * 16 15 13 42 42 H 1.09001 * 109.62240 * 9.10854 * 16 15 13 43 43 H 1.08998 * 109.65296 * 294.08665 * 17 16 15 44 44 H 1.08992 * 109.44229 * 173.96247 * 17 16 15 45 45 H 1.09003 * 109.46847 * 54.30075 * 19 18 17 46 46 H 1.08995 * 109.47476 * 174.30231 * 19 18 17 47 47 H 0.96991 * 120.00080 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.48861 * 303.14473 * 28 18 17 49 49 H 1.08996 * 109.49134 * 183.06509 * 28 18 17 50 50 H 1.09000 * 109.62882 * 350.89330 * 29 15 13 51 51 H 1.08996 * 109.62899 * 111.47926 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4703 -2.0303 1.3094 6 6 1.8228 -2.8086 2.3663 7 6 2.7035 -2.3244 3.3226 8 6 3.0562 -3.1155 4.3987 9 6 2.5404 -4.3928 4.5176 10 6 1.6670 -4.8799 3.5628 11 6 1.3070 -4.0907 2.4876 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.9448 1.1803 -2.3913 15 7 2.4995 -0.6743 -3.4804 16 6 2.5289 0.0147 -4.7795 17 6 3.8941 -0.2494 -5.4343 18 7 4.1303 -1.6981 -5.4948 19 6 5.3409 -2.0023 -6.2692 20 6 5.1299 -1.6057 -7.7077 21 1 4.1902 -1.1714 -8.0159 22 6 6.1364 -1.7971 -8.6304 23 7 5.9521 -1.4515 -9.8858 24 14 7.7619 -2.5475 -8.0972 25 1 7.6939 -4.0246 -8.2347 26 1 8.8548 -2.0205 -8.9533 27 1 8.0290 -2.1941 -6.6798 28 6 4.2056 -2.2824 -4.1490 29 6 2.8591 -2.1000 -3.4406 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 3.1096 -1.3281 3.2281 36 1 3.7383 -2.7374 5.1458 37 1 2.8205 -5.0114 5.3575 38 1 1.2657 -5.8782 3.6577 39 1 0.6251 -4.4718 1.7419 40 1 2.2490 -1.6317 -1.1527 41 1 1.7330 -0.3709 -5.4166 42 1 2.3947 1.0859 -4.6289 43 1 4.6805 0.2230 -4.8457 44 1 3.8981 0.1621 -6.4436 45 1 6.1839 -1.4463 -5.8589 46 1 5.5489 -3.0708 -6.2137 47 1 6.6603 -1.5858 -10.5348 48 1 4.9876 -1.7815 -3.5783 49 1 4.4350 -3.3451 -4.2262 50 1 2.9432 -2.4276 -2.4044 51 1 2.0943 -2.6849 -3.9515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875125167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:39 Heat of formation + Delta-G solvation = -41.413707 kcal Electronic energy + Delta-G solvation = -30419.923629 eV Core-core repulsion = 26319.281016 eV Total energy + Delta-G solvation = -4100.642613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63382 -40.97586 -39.32587 -38.47006 -36.42130 -36.00079 -34.43727 -32.69831 -31.93091 -31.62804 -30.61591 -30.14227 -27.88589 -27.24859 -24.81976 -23.93096 -23.51453 -23.25972 -22.43161 -21.53151 -20.67435 -19.29821 -19.18095 -18.85280 -17.70953 -17.00713 -16.85948 -16.70852 -16.47819 -16.44852 -16.06650 -15.80373 -15.56800 -15.37542 -15.23188 -15.01465 -14.66479 -14.45681 -14.43811 -14.27655 -14.14051 -13.64702 -13.46561 -13.40856 -13.15658 -12.86063 -12.72418 -12.51147 -12.43837 -12.31244 -12.25686 -12.11419 -11.93551 -11.90807 -11.86084 -11.69230 -11.46139 -11.20429 -10.77532 -10.29569 -9.90721 -9.63568 -9.13142 -9.06031 -8.27638 -6.31193 0.43794 0.53647 1.35047 1.36762 1.46737 1.54956 2.04938 2.19536 2.34465 2.83177 2.89852 3.04288 3.13890 3.58341 3.90819 3.94671 3.97688 4.03121 4.04799 4.11782 4.22883 4.25737 4.29291 4.36706 4.39709 4.44032 4.53831 4.55174 4.62653 4.69019 4.73764 4.81062 4.82128 4.83574 4.92791 4.94747 5.00890 5.10701 5.12913 5.28921 5.40394 5.40929 5.50063 5.52228 5.53355 5.65712 5.84173 5.88975 6.00631 6.27223 6.46067 6.61165 6.75283 6.90548 7.32222 7.48885 8.88666 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.002156 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.352673 B =12981.901947 C =14454.884616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.099 0.901 4 C 0.057 3.943 5 O -0.320 6.320 6 C 0.115 3.885 7 C -0.219 4.219 8 C -0.089 4.089 9 C -0.167 4.167 10 C -0.087 4.087 11 C -0.168 4.168 12 N -0.730 5.730 13 C 0.707 3.293 14 O -0.631 6.631 15 N -0.629 5.629 16 C 0.145 3.855 17 C 0.058 3.942 18 N -0.538 5.538 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.041 0.959 22 C 0.007 3.993 23 N -0.947 5.947 24 Si 0.948 3.052 25 H -0.262 1.262 26 H -0.285 1.285 27 H -0.254 1.254 28 C 0.036 3.964 29 C 0.125 3.875 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.407 0.593 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.071 0.929 45 H -0.017 1.017 46 H 0.036 0.964 47 H 0.266 0.734 48 H 0.026 0.974 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 -5.422 33.366 34.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.117 0.883 4 C -0.019 4.019 5 O -0.234 6.234 6 C 0.069 3.931 7 C -0.237 4.237 8 C -0.107 4.107 9 C -0.186 4.186 10 C -0.105 4.105 11 C -0.187 4.187 12 N -0.388 5.388 13 C 0.408 3.592 14 O -0.513 6.513 15 N -0.365 5.365 16 C 0.022 3.978 17 C -0.071 4.071 18 N -0.262 5.262 19 C 0.046 3.954 20 C -0.554 4.554 21 H 0.059 0.941 22 C -0.190 4.190 23 N -0.588 5.588 24 Si 0.771 3.229 25 H -0.187 1.187 26 H -0.210 1.210 27 H -0.178 1.178 28 C -0.093 4.093 29 C 0.002 3.998 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.246 0.754 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.001 0.999 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.117 0.883 50 H 0.124 0.876 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.987 -4.813 32.792 34.340 hybrid contribution 1.699 0.058 -0.289 1.725 sum -7.287 -4.755 32.504 33.648 Atomic orbital electron populations 1.22060 0.94341 1.02697 1.02253 1.20987 0.95177 0.96430 0.81524 0.88303 1.23170 0.98572 0.81798 0.98316 1.86048 1.67540 1.26578 1.43220 1.19201 0.94926 0.91447 0.87479 1.21509 1.02577 1.02508 0.97154 1.21286 0.98396 0.94042 0.96995 1.21409 0.99646 0.96689 1.00812 1.21290 0.96328 1.00074 0.92785 1.20691 1.04302 0.92465 1.01241 1.45239 1.71118 1.14294 1.08136 1.15945 0.77698 0.84588 0.80922 1.90863 1.60529 1.14343 1.85543 1.47410 1.71034 1.11672 1.06417 1.21550 0.96437 0.97800 0.82049 1.22332 0.95790 0.88815 1.00167 1.61800 1.38830 1.11739 1.13868 1.19938 0.87219 0.95988 0.92302 1.21252 1.00679 1.40686 0.92818 0.94097 1.25850 1.02620 0.95904 0.94675 1.70047 1.35220 1.49917 1.03566 0.85710 0.78694 0.79410 0.79061 1.18685 1.21042 1.17753 1.22586 0.96707 1.01109 0.88862 1.21839 0.96182 0.80342 1.01422 0.91689 0.89887 0.94100 0.90474 0.88247 0.84282 0.84048 0.84133 0.83561 0.84923 0.75423 0.90762 0.89583 0.96371 0.91027 0.99901 0.94584 0.92465 0.95538 0.88293 0.87576 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.29 71.98 0.67 -1.95 16 2 C 0.16 2.77 3.02 44.99 0.14 2.91 16 3 H 0.10 1.90 7.51 -2.39 -0.02 1.88 16 4 C 0.06 0.68 4.48 71.98 0.32 1.00 16 5 O -0.32 -4.77 8.99 -92.41 -0.83 -5.60 16 6 C 0.11 1.72 6.69 22.51 0.15 1.87 16 7 C -0.22 -2.78 9.04 22.37 0.20 -2.57 16 8 C -0.09 -1.00 10.04 22.25 0.22 -0.77 16 9 C -0.17 -1.80 10.04 22.28 0.22 -1.58 16 10 C -0.09 -1.00 10.04 22.26 0.22 -0.78 16 11 C -0.17 -2.40 9.99 22.37 0.22 -2.17 16 12 N -0.73 -15.02 4.97 -457.82 -2.27 -17.30 16 13 C 0.71 20.49 8.27 179.06 1.48 21.97 16 14 O -0.63 -22.91 15.43 -4.00 -0.06 -22.97 16 15 N -0.63 -18.18 3.00 -835.02 -2.51 -20.68 16 16 C 0.15 4.85 6.64 86.50 0.57 5.42 16 17 C 0.06 2.28 5.47 86.54 0.47 2.75 16 18 N -0.54 -21.36 4.62 -898.87 -4.15 -25.51 16 19 C 0.17 8.05 3.79 85.56 0.32 8.38 16 20 C -0.52 -29.39 8.96 25.60 0.23 -29.16 16 21 H 0.04 2.60 7.37 -2.91 -0.02 2.58 16 22 C 0.01 0.40 5.47 84.65 0.46 0.86 16 23 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 24 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 28 C 0.04 1.07 5.62 86.38 0.49 1.55 16 29 C 0.12 2.94 6.53 86.35 0.56 3.51 16 30 H 0.06 1.11 7.56 -2.39 -0.02 1.10 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.84 7.65 -2.39 -0.02 0.82 16 34 H 0.10 0.80 7.67 -2.39 -0.02 0.78 16 35 H 0.14 1.30 6.30 -2.91 -0.02 1.28 16 36 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 37 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.41 6.94 5.92 -92.71 -0.55 6.39 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.09 2.96 7.04 -2.39 -0.02 2.94 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.07 3.21 6.67 -2.39 -0.02 3.19 16 45 H -0.02 -0.79 7.18 -2.39 -0.02 -0.81 16 46 H 0.04 1.61 7.40 -2.39 -0.02 1.60 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 48 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 50 H 0.11 1.75 5.74 -2.39 -0.01 1.74 16 51 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -73.90 403.97 -0.35 -74.25 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.32 Total: 19.76 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.97 Total: 11.23 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -8.64 Total: -122.09 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.89 Total: -28.56 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -73.90 -0.35 -74.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875125167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds