Wall clock time and date at job start Wed Apr 1 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.46744 * 2 1 4 4 C 1.34776 * 119.99884 * 270.00036 * 3 2 1 5 5 O 1.21292 * 120.00036 * 184.37435 * 4 3 2 6 6 C 1.50696 * 120.00284 * 4.36740 * 4 3 2 7 7 N 1.46495 * 109.47435 * 179.97438 * 6 4 3 8 8 C 1.34775 * 120.00090 * 180.02562 * 7 6 4 9 9 O 1.21588 * 120.00252 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99908 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00045 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47387 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46995 * 299.99874 * 12 11 10 14 14 C 1.53001 * 109.47240 * 59.99629 * 12 11 10 15 15 C 1.50696 * 109.47253 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00156 * 0.98292 * 15 12 11 17 17 C 1.37878 * 120.00090 * 180.98455 * 15 12 11 18 18 N 1.31510 * 120.00350 * 192.50544 * 17 15 12 19 19 Si 1.86797 * 119.99966 * 12.50314 * 17 15 12 20 20 H 1.48504 * 109.47080 * 84.63542 * 19 17 15 21 21 H 1.48497 * 109.47357 * 204.63382 * 19 17 15 22 22 H 1.48500 * 109.47482 * 324.63738 * 19 17 15 23 23 C 1.39923 * 120.00190 * 90.00047 * 3 2 1 24 24 C 1.38870 * 120.07293 * 237.43551 * 23 3 2 25 25 C 1.38113 * 119.93026 * 179.69792 * 24 23 3 26 26 C 1.38279 * 120.07129 * 0.57521 * 25 24 23 27 27 C 1.38288 * 120.13774 * 359.72478 * 26 25 24 28 28 C 1.38103 * 120.07158 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47433 * 299.99634 * 1 2 3 30 30 H 1.09002 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47093 * 60.00232 * 1 2 3 32 32 H 1.09002 * 109.47369 * 119.99788 * 2 1 3 33 33 H 1.09004 * 109.47088 * 239.99818 * 2 1 3 34 34 H 1.08996 * 109.47297 * 300.00555 * 6 4 3 35 35 H 1.09007 * 109.46622 * 60.00615 * 6 4 3 36 36 H 0.97000 * 120.00149 * 0.02562 * 7 6 4 37 37 H 0.96993 * 120.00004 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46849 * 299.99838 * 11 10 8 39 39 H 1.08997 * 109.46992 * 59.99229 * 11 10 8 40 40 H 1.08999 * 109.47121 * 68.82326 * 13 12 11 41 41 H 1.08993 * 109.47089 * 188.82594 * 13 12 11 42 42 H 1.09004 * 109.46817 * 308.83013 * 13 12 11 43 43 H 1.08996 * 109.46710 * 60.00438 * 14 12 11 44 44 H 1.09002 * 109.47196 * 180.02562 * 14 12 11 45 45 H 1.08995 * 109.47071 * 300.00602 * 14 12 11 46 46 H 0.96994 * 120.00693 * 179.97438 * 18 17 15 47 47 H 1.07998 * 120.03378 * 359.97438 * 24 23 3 48 48 H 1.08000 * 119.96344 * 180.30364 * 25 24 23 49 49 H 1.07995 * 119.93501 * 179.70078 * 26 25 24 50 50 H 1.07999 * 119.95958 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03497 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0165 -1.1672 5 8 2.7217 3.1309 -1.1688 6 6 1.8991 1.3424 -2.4704 7 7 2.2348 2.2327 -3.5843 8 6 2.0118 1.8378 -4.8534 9 8 1.5324 0.7424 -5.0740 10 7 2.3211 2.6568 -5.8782 11 6 2.0782 2.2278 -7.2578 12 6 2.5134 3.3346 -8.2202 13 6 1.7110 4.6052 -7.9325 14 6 4.0046 3.6190 -8.0296 15 6 2.2629 2.8935 -9.6393 16 1 1.8213 1.9274 -9.8346 17 6 2.5975 3.7233 -10.6884 18 7 2.1632 3.4580 -11.9010 19 14 3.6678 5.2243 -10.3873 20 1 5.0983 4.8272 -10.4214 21 1 3.4097 6.2362 -11.4431 22 1 3.3464 5.8030 -9.0579 23 6 2.2515 2.0409 1.2117 24 6 1.5992 3.2346 1.4909 25 6 1.8268 3.8800 2.6906 26 6 2.7121 3.3450 3.6082 27 6 3.3680 2.1596 3.3305 28 6 3.1400 1.5061 2.1354 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.4667 0.4163 -2.5612 35 1 0.8325 1.1186 -2.4934 36 1 2.6176 3.1065 -3.4084 37 1 2.7039 3.5305 -5.7023 38 1 2.6495 1.3223 -7.4626 39 1 1.0158 2.0255 -7.3936 40 1 2.0089 5.0120 -6.9661 41 1 1.9050 5.3417 -8.7122 42 1 0.6475 4.3669 -7.9141 43 1 4.5762 2.7139 -8.2347 44 1 4.3145 4.4079 -8.7150 45 1 4.1853 3.9382 -7.0032 46 1 2.3982 4.0419 -12.6390 47 1 0.9113 3.6555 0.7727 48 1 1.3161 4.8059 2.9103 49 1 2.8921 3.8540 4.5435 50 1 4.0591 1.7445 4.0491 51 1 3.6522 0.5802 1.9194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922838132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:35 Heat of formation + Delta-G solvation = -14.339791 kcal Electronic energy + Delta-G solvation = -30277.830373 eV Core-core repulsion = 26178.361773 eV Total energy + Delta-G solvation = -4099.468600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18628 -39.73494 -38.79117 -36.85556 -36.48430 -34.36186 -33.27778 -31.89169 -31.44259 -31.33940 -29.92218 -27.91660 -26.35674 -25.60400 -24.71429 -24.21168 -23.06219 -22.54926 -20.71236 -20.01352 -19.18405 -18.52823 -17.93498 -16.83686 -16.65602 -16.33155 -16.08564 -15.86262 -15.45894 -15.24392 -14.81852 -14.69064 -14.39211 -14.19866 -13.85134 -13.83588 -13.60719 -13.42231 -13.16237 -13.10496 -12.90713 -12.67172 -12.56691 -12.45311 -12.17563 -12.04931 -11.91254 -11.65639 -11.61253 -11.28773 -10.42256 -10.38308 -10.29252 -10.11529 -10.02663 -10.01150 -9.91780 -9.34500 -9.18419 -9.09223 -8.69928 -8.66159 -8.48363 -8.35588 -6.12176 -4.09968 0.83568 0.99320 2.09729 2.21910 3.01377 3.26166 3.33716 3.34388 3.40607 3.48979 4.02824 4.35226 4.37757 4.49590 4.54943 4.59542 4.65774 4.72114 4.84088 4.98438 5.04293 5.08292 5.10051 5.16749 5.18888 5.31736 5.37225 5.59444 5.72235 5.78409 5.90320 5.97406 6.08151 6.10307 6.11132 6.14715 6.34098 6.38863 6.47477 6.56674 6.61582 6.64853 6.73707 6.76297 6.84224 7.00436 7.19596 7.26433 7.46052 7.61319 7.74788 8.29321 8.48547 8.87549 8.93146 9.51374 11.00814 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.001944 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.058025 B =14401.252997 C =15189.477018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.568 5.568 4 C 0.513 3.487 5 O -0.517 6.517 6 C 0.126 3.874 7 N -0.745 5.745 8 C 0.704 3.296 9 O -0.596 6.596 10 N -0.735 5.735 11 C 0.161 3.839 12 C 0.027 3.973 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.510 4.510 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.883 3.117 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.246 1.246 23 C 0.146 3.854 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.108 4.108 28 C -0.127 4.127 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.405 0.595 37 H 0.394 0.606 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.029 0.971 46 H 0.264 0.736 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.124 0.876 50 H 0.126 0.874 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -3.606 32.945 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.298 5.298 4 C 0.302 3.698 5 O -0.391 6.391 6 C -0.002 4.002 7 N -0.406 5.406 8 C 0.403 3.597 9 O -0.475 6.475 10 N -0.389 5.389 11 C 0.038 3.962 12 C 0.026 3.974 13 C -0.202 4.202 14 C -0.203 4.203 15 C -0.548 4.548 16 H 0.095 0.905 17 C -0.128 4.128 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.214 1.214 21 H -0.234 1.234 22 H -0.172 1.172 23 C 0.056 3.944 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.127 4.127 28 C -0.147 4.147 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.242 0.758 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.142 0.858 50 H 0.144 0.856 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.506 -4.000 32.436 32.686 hybrid contribution 0.995 1.556 0.171 1.854 sum 0.489 -2.444 32.607 32.702 Atomic orbital electron populations 1.22232 0.94886 1.03150 1.02989 1.21846 0.95343 0.80718 1.04341 1.45527 1.65606 1.14870 1.03774 1.20839 0.77449 0.86205 0.85322 1.90739 1.42283 1.19329 1.86783 1.20844 1.02877 0.93657 0.82816 1.44799 1.70682 1.21293 1.03782 1.15887 0.79246 0.84487 0.80053 1.90902 1.51188 1.21370 1.84073 1.45479 1.67504 1.19516 1.06416 1.21399 1.00617 0.97923 0.76269 1.18746 0.91296 0.91728 0.95634 1.22353 1.00199 0.99037 0.98611 1.22309 0.99266 1.00681 0.97996 1.20711 1.42199 1.04842 0.87083 0.90486 1.24974 0.95479 0.97343 0.95024 1.69933 1.43660 1.39047 1.00275 0.87358 0.80712 0.83070 0.77279 1.21399 1.23412 1.17204 1.17589 0.96548 0.94036 0.86249 1.21165 0.99270 0.95225 0.97100 1.21060 0.98287 0.99745 0.93392 1.21199 0.97247 0.96194 0.99707 1.21011 0.99638 0.95462 0.96539 1.21118 0.97412 1.01419 0.94769 0.92048 0.90647 0.91827 0.89508 0.89100 0.88458 0.88282 0.75817 0.77183 0.92085 0.91991 0.95938 0.92332 0.93372 0.92759 0.94171 0.95184 0.92590 0.85937 0.85599 0.85816 0.85597 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.23 37.16 0.38 -0.52 16 2 C 0.10 0.54 5.82 -4.04 -0.02 0.51 16 3 N -0.57 -4.79 2.57 -113.45 -0.29 -5.09 16 4 C 0.51 5.53 7.54 -10.99 -0.08 5.44 16 5 O -0.52 -7.20 15.04 5.55 0.08 -7.11 16 6 C 0.13 1.35 4.81 -5.20 -0.02 1.33 16 7 N -0.75 -9.92 5.53 -66.42 -0.37 -10.29 16 8 C 0.70 11.90 8.57 -86.92 -0.74 11.15 16 9 O -0.60 -12.02 16.34 5.29 0.09 -11.93 16 10 N -0.73 -12.49 5.01 -65.23 -0.33 -12.82 16 11 C 0.16 3.27 4.49 -4.04 -0.02 3.25 16 12 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 13 C -0.14 -2.99 7.52 37.16 0.28 -2.71 16 14 C -0.15 -3.00 7.59 37.16 0.28 -2.72 16 15 C -0.51 -13.76 8.62 -34.44 -0.30 -14.06 16 16 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 17 C 0.07 2.08 5.34 -17.82 -0.10 1.98 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.88 21.24 22.76 -169.99 -3.87 17.37 16 20 H -0.29 -6.87 7.07 56.52 0.40 -6.47 16 21 H -0.31 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.25 -5.40 4.60 56.52 0.26 -5.14 16 23 C 0.15 1.33 5.14 -83.69 -0.43 0.90 16 24 C -0.11 -1.00 8.96 -39.39 -0.35 -1.35 16 25 C -0.11 -0.81 10.04 -39.61 -0.40 -1.21 16 26 C -0.13 -0.84 10.04 -39.55 -0.40 -1.23 16 27 C -0.11 -0.71 10.04 -39.61 -0.40 -1.11 16 28 C -0.13 -0.97 9.33 -39.39 -0.37 -1.33 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 6.97 -51.93 -0.36 0.03 16 32 H 0.09 0.34 7.41 -51.93 -0.38 -0.04 16 33 H 0.09 0.41 6.47 -51.93 -0.34 0.08 16 34 H 0.10 0.95 7.27 -51.93 -0.38 0.57 16 35 H 0.10 0.99 6.97 -51.93 -0.36 0.63 16 36 H 0.41 5.12 7.45 -40.82 -0.30 4.82 16 37 H 0.39 5.96 6.26 -40.82 -0.26 5.70 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.39 7.11 -51.93 -0.37 0.02 16 41 H 0.06 1.29 4.07 -51.93 -0.21 1.07 16 42 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.87 2.38 -51.93 -0.12 0.75 16 45 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 50 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 51 H 0.12 0.75 7.88 -52.48 -0.41 0.33 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -34.01 399.06 -8.44 -42.46 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.78 Total: 8.57 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.77 Total: -1.16 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.21 Total: -54.21 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -3.87 Total: 17.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.01 -8.44 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922838132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.119 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds