Wall clock time and date at job start Wed Apr 1 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.46744 * 2 1 4 4 C 1.34776 * 119.99884 * 270.00036 * 3 2 1 5 5 O 1.21292 * 120.00036 * 184.37435 * 4 3 2 6 6 C 1.50696 * 120.00284 * 4.36740 * 4 3 2 7 7 N 1.46495 * 109.47435 * 179.97438 * 6 4 3 8 8 C 1.34775 * 120.00090 * 180.02562 * 7 6 4 9 9 O 1.21588 * 120.00252 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99908 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00045 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47387 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46995 * 299.99874 * 12 11 10 14 14 C 1.53001 * 109.47240 * 59.99629 * 12 11 10 15 15 C 1.50696 * 109.47253 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00156 * 0.98292 * 15 12 11 17 17 C 1.37878 * 120.00090 * 180.98455 * 15 12 11 18 18 N 1.31510 * 120.00350 * 192.50544 * 17 15 12 19 19 Si 1.86797 * 119.99966 * 12.50314 * 17 15 12 20 20 H 1.48504 * 109.47080 * 84.63542 * 19 17 15 21 21 H 1.48497 * 109.47357 * 204.63382 * 19 17 15 22 22 H 1.48500 * 109.47482 * 324.63738 * 19 17 15 23 23 C 1.39923 * 120.00190 * 90.00047 * 3 2 1 24 24 C 1.38870 * 120.07293 * 237.43551 * 23 3 2 25 25 C 1.38113 * 119.93026 * 179.69792 * 24 23 3 26 26 C 1.38279 * 120.07129 * 0.57521 * 25 24 23 27 27 C 1.38288 * 120.13774 * 359.72478 * 26 25 24 28 28 C 1.38103 * 120.07158 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47433 * 299.99634 * 1 2 3 30 30 H 1.09002 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47093 * 60.00232 * 1 2 3 32 32 H 1.09002 * 109.47369 * 119.99788 * 2 1 3 33 33 H 1.09004 * 109.47088 * 239.99818 * 2 1 3 34 34 H 1.08996 * 109.47297 * 300.00555 * 6 4 3 35 35 H 1.09007 * 109.46622 * 60.00615 * 6 4 3 36 36 H 0.97000 * 120.00149 * 0.02562 * 7 6 4 37 37 H 0.96993 * 120.00004 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46849 * 299.99838 * 11 10 8 39 39 H 1.08997 * 109.46992 * 59.99229 * 11 10 8 40 40 H 1.08999 * 109.47121 * 68.82326 * 13 12 11 41 41 H 1.08993 * 109.47089 * 188.82594 * 13 12 11 42 42 H 1.09004 * 109.46817 * 308.83013 * 13 12 11 43 43 H 1.08996 * 109.46710 * 60.00438 * 14 12 11 44 44 H 1.09002 * 109.47196 * 180.02562 * 14 12 11 45 45 H 1.08995 * 109.47071 * 300.00602 * 14 12 11 46 46 H 0.96994 * 120.00693 * 179.97438 * 18 17 15 47 47 H 1.07998 * 120.03378 * 359.97438 * 24 23 3 48 48 H 1.08000 * 119.96344 * 180.30364 * 25 24 23 49 49 H 1.07995 * 119.93501 * 179.70078 * 26 25 24 50 50 H 1.07999 * 119.95958 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03497 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0165 -1.1672 5 8 2.7217 3.1309 -1.1688 6 6 1.8991 1.3424 -2.4704 7 7 2.2348 2.2327 -3.5843 8 6 2.0118 1.8378 -4.8534 9 8 1.5324 0.7424 -5.0740 10 7 2.3211 2.6568 -5.8782 11 6 2.0782 2.2278 -7.2578 12 6 2.5134 3.3346 -8.2202 13 6 1.7110 4.6052 -7.9325 14 6 4.0046 3.6190 -8.0296 15 6 2.2629 2.8935 -9.6393 16 1 1.8213 1.9274 -9.8346 17 6 2.5975 3.7233 -10.6884 18 7 2.1632 3.4580 -11.9010 19 14 3.6678 5.2243 -10.3873 20 1 5.0983 4.8272 -10.4214 21 1 3.4097 6.2362 -11.4431 22 1 3.3464 5.8030 -9.0579 23 6 2.2515 2.0409 1.2117 24 6 1.5992 3.2346 1.4909 25 6 1.8268 3.8800 2.6906 26 6 2.7121 3.3450 3.6082 27 6 3.3680 2.1596 3.3305 28 6 3.1400 1.5061 2.1354 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.4667 0.4163 -2.5612 35 1 0.8325 1.1186 -2.4934 36 1 2.6176 3.1065 -3.4084 37 1 2.7039 3.5305 -5.7023 38 1 2.6495 1.3223 -7.4626 39 1 1.0158 2.0255 -7.3936 40 1 2.0089 5.0120 -6.9661 41 1 1.9050 5.3417 -8.7122 42 1 0.6475 4.3669 -7.9141 43 1 4.5762 2.7139 -8.2347 44 1 4.3145 4.4079 -8.7150 45 1 4.1853 3.9382 -7.0032 46 1 2.3982 4.0419 -12.6390 47 1 0.9113 3.6555 0.7727 48 1 1.3161 4.8059 2.9103 49 1 2.8921 3.8540 4.5435 50 1 4.0591 1.7445 4.0491 51 1 3.6522 0.5802 1.9194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922838132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:34 Heat of formation + Delta-G solvation = -37.779163 kcal Electronic energy + Delta-G solvation = -30278.846780 eV Core-core repulsion = 26178.361773 eV Total energy + Delta-G solvation = -4100.485007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95087 -40.99075 -39.54075 -38.49900 -37.16314 -35.53518 -34.97598 -33.40509 -32.38541 -31.88548 -30.62146 -28.90281 -28.00745 -27.26332 -26.55811 -24.73834 -23.73620 -23.13416 -22.01575 -20.95214 -20.73258 -19.73766 -18.61803 -18.06143 -17.68807 -17.46988 -17.24148 -17.04391 -16.77281 -16.48699 -15.76980 -15.62831 -15.38305 -15.09451 -14.98979 -14.82682 -14.77312 -14.42775 -14.36271 -14.26748 -13.96830 -13.94335 -13.78267 -13.65480 -13.57549 -12.95055 -12.91088 -12.41426 -12.37451 -12.15581 -12.14522 -12.09667 -11.91131 -11.74024 -11.42701 -11.20584 -11.02793 -10.63420 -10.62052 -10.43054 -10.38269 -9.90060 -9.77741 -9.30295 -8.28234 -6.30128 0.25413 0.43744 1.30569 1.37666 1.38137 1.38751 1.51174 1.96321 2.13682 2.35829 2.78396 3.07739 3.26463 3.33335 3.90852 3.98564 4.03464 4.08608 4.14457 4.24274 4.27852 4.29535 4.36154 4.42533 4.44753 4.52310 4.52998 4.62805 4.75452 4.85179 4.87131 4.88406 4.92468 4.95893 5.07157 5.08074 5.18762 5.23048 5.32076 5.38746 5.42626 5.44231 5.56192 5.57601 5.58302 5.73249 5.79922 5.95542 6.02598 6.10167 6.32611 6.74101 6.84683 7.05853 7.34623 7.54832 8.88602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.001944 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.058025 B =14401.252997 C =15189.477018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.559 5.559 4 C 0.516 3.484 5 O -0.554 6.554 6 C 0.125 3.875 7 N -0.732 5.732 8 C 0.705 3.295 9 O -0.631 6.631 10 N -0.726 5.726 11 C 0.177 3.823 12 C 0.026 3.974 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.513 4.513 16 H 0.031 0.969 17 C 0.016 3.984 18 N -0.946 5.946 19 Si 0.941 3.059 20 H -0.282 1.282 21 H -0.316 1.316 22 H -0.203 1.203 23 C 0.126 3.874 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.109 4.109 28 C -0.133 4.133 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.411 0.589 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.264 0.736 47 H 0.107 0.893 48 H 0.139 0.861 49 H 0.148 0.852 50 H 0.152 0.848 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -2.735 36.728 36.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.287 5.287 4 C 0.305 3.695 5 O -0.431 6.431 6 C -0.002 4.002 7 N -0.391 5.391 8 C 0.405 3.595 9 O -0.512 6.512 10 N -0.382 5.382 11 C 0.053 3.947 12 C 0.025 3.975 13 C -0.200 4.200 14 C -0.202 4.202 15 C -0.551 4.551 16 H 0.049 0.951 17 C -0.182 4.182 18 N -0.585 5.585 19 Si 0.770 3.230 20 H -0.210 1.210 21 H -0.245 1.245 22 H -0.127 1.127 23 C 0.035 3.965 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.145 4.145 27 C -0.127 4.127 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.249 0.751 37 H 0.243 0.757 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.126 0.874 48 H 0.157 0.843 49 H 0.166 0.834 50 H 0.170 0.830 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.945 -3.137 36.316 36.463 hybrid contribution 0.460 1.142 -0.895 1.523 sum 1.405 -1.994 35.420 35.504 Atomic orbital electron populations 1.22199 0.94742 1.03911 1.02049 1.22109 0.95452 0.79310 1.05867 1.45553 1.64503 1.15638 1.03056 1.20778 0.77142 0.85724 0.85853 1.90717 1.44341 1.20807 1.87283 1.21012 1.03635 0.93572 0.82006 1.44664 1.69598 1.21797 1.03064 1.15912 0.78880 0.83866 0.80841 1.90885 1.52705 1.22894 1.84724 1.45132 1.67790 1.20136 1.05113 1.20918 0.99015 0.96830 0.77934 1.18680 0.93151 0.92880 0.92800 1.22275 0.99731 0.97717 1.00325 1.22244 0.97224 1.00376 1.00325 1.21003 1.40894 1.02956 0.90246 0.95088 1.25843 0.96810 1.00990 0.94529 1.70093 1.45893 1.40980 1.01563 0.86420 0.78555 0.79083 0.78904 1.20996 1.24535 1.12658 1.17808 0.97552 0.94435 0.86704 1.21218 1.00005 0.95971 0.97772 1.21300 0.98697 1.00278 0.93095 1.21541 0.96396 0.96264 1.00281 1.21383 0.99539 0.95215 0.96573 1.21353 0.97036 1.02067 0.94786 0.92707 0.89016 0.93021 0.87574 0.88000 0.87122 0.87464 0.75099 0.75653 0.93750 0.93973 0.91910 0.93377 0.93931 0.93329 0.94824 0.91111 0.92730 0.87449 0.84322 0.83432 0.83043 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.23 71.98 0.74 -0.81 16 2 C 0.09 0.83 5.82 86.38 0.50 1.33 16 3 N -0.56 -8.75 2.57 -631.25 -1.62 -10.38 16 4 C 0.52 10.57 7.54 87.66 0.66 11.24 16 5 O -0.55 -15.04 15.04 -3.07 -0.05 -15.09 16 6 C 0.13 2.49 4.81 85.63 0.41 2.91 16 7 N -0.73 -18.20 5.53 -482.31 -2.67 -20.87 16 8 C 0.71 22.81 8.57 179.05 1.53 24.35 16 9 O -0.63 -25.02 16.34 -3.99 -0.07 -25.08 16 10 N -0.73 -23.23 5.01 -478.54 -2.40 -25.63 16 11 C 0.18 7.16 4.49 86.38 0.39 7.54 16 12 C 0.03 1.12 0.50 -52.93 -0.03 1.09 16 13 C -0.14 -5.54 7.52 71.98 0.54 -5.00 16 14 C -0.14 -5.53 7.59 71.98 0.55 -4.98 16 15 C -0.51 -28.37 8.62 25.60 0.22 -28.14 16 16 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 17 C 0.02 0.89 5.34 84.66 0.45 1.34 16 18 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 19 Si 0.94 43.15 22.76 68.60 1.56 44.71 16 20 H -0.28 -12.73 7.07 99.48 0.70 -12.02 16 21 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 22 H -0.20 -7.91 4.60 99.48 0.46 -7.45 16 23 C 0.13 2.14 5.14 38.15 0.20 2.33 16 24 C -0.13 -2.37 8.96 22.39 0.20 -2.17 16 25 C -0.12 -1.63 10.04 22.25 0.22 -1.41 16 26 C -0.13 -1.40 10.04 22.29 0.22 -1.18 16 27 C -0.11 -1.15 10.04 22.25 0.22 -0.92 16 28 C -0.13 -1.73 9.33 22.39 0.21 -1.52 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.59 6.97 -2.39 -0.02 0.58 16 32 H 0.11 0.57 7.41 -2.39 -0.02 0.55 16 33 H 0.10 0.70 6.47 -2.39 -0.02 0.68 16 34 H 0.11 1.95 7.27 -2.39 -0.02 1.93 16 35 H 0.11 2.01 6.97 -2.38 -0.02 1.99 16 36 H 0.41 9.54 7.45 -92.71 -0.69 8.85 16 37 H 0.41 10.84 6.26 -92.71 -0.58 10.26 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.92 7.11 -2.39 -0.02 1.90 16 41 H 0.05 1.96 4.07 -2.39 -0.01 1.95 16 42 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.03 1.34 2.38 -2.39 -0.01 1.33 16 45 H 0.07 2.12 6.86 -2.39 -0.02 2.11 16 46 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.11 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 50 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 51 H 0.14 1.30 7.88 -2.91 -0.02 1.27 16 Total: -1.00 -76.87 399.06 1.74 -75.13 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.56 Total: 29.85 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 7.24 Total: 5.99 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.39 Total: -115.51 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.11 Total: -40.17 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.56 Total: 44.71 kcal Total: -76.87 1.74 -75.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922838132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.347 kcal (2) G-P(sol) polarization free energy of solvation -76.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds