Wall clock time and date at job start Wed Apr 1 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47323 * 2 1 4 4 C 1.50700 * 109.47124 * 120.00104 * 2 1 3 5 5 O 1.21280 * 120.00111 * 104.49308 * 4 2 1 6 6 N 1.34775 * 119.99973 * 284.49376 * 4 2 1 7 7 C 1.47157 * 120.98576 * 185.79951 * 6 4 2 8 8 C 1.53306 * 108.36953 * 129.40520 * 7 6 4 9 9 O 1.42966 * 109.22681 * 52.35201 * 8 7 6 10 10 C 1.42893 * 114.21246 * 297.50837 * 9 8 7 11 11 C 1.52992 * 109.55795 * 302.51769 * 10 9 8 12 12 C 1.53190 * 109.35108 * 300.95601 * 11 10 9 13 13 N 1.46927 * 108.77506 * 305.43122 * 12 11 10 14 14 C 1.36942 * 120.64093 * 233.64592 * 13 12 11 15 15 H 1.08001 * 119.99839 * 29.55315 * 14 13 12 16 16 C 1.38810 * 120.00295 * 209.55556 * 14 13 12 17 17 N 1.31614 * 119.99921 * 10.26656 * 16 14 13 18 18 Si 1.86801 * 119.99962 * 190.26463 * 16 14 13 19 19 H 1.48503 * 109.46837 * 60.00101 * 18 16 14 20 20 H 1.48506 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47109 * 299.99879 * 18 16 14 22 22 C 1.46924 * 118.72277 * 53.66666 * 13 12 11 23 23 C 1.52992 * 109.55091 * 182.21775 * 10 9 8 24 24 C 1.47154 * 120.98563 * 5.52146 * 6 4 2 25 25 N 1.46503 * 109.47084 * 240.00064 * 2 1 3 26 26 C 1.36343 * 125.63447 * 120.00374 * 25 2 1 27 27 C 1.34855 * 108.21612 * 180.20691 * 26 25 2 28 28 C 1.40887 * 107.41414 * 359.64021 * 27 26 25 29 29 C 1.34849 * 107.42026 * 0.35794 * 28 27 26 30 30 H 1.09008 * 109.46889 * 185.14124 * 1 2 3 31 31 H 1.08996 * 109.47442 * 305.14462 * 1 2 3 32 32 H 1.09000 * 109.47546 * 65.14596 * 1 2 3 33 33 H 1.08997 * 109.68184 * 249.12046 * 7 6 4 34 34 H 1.08995 * 109.68359 * 9.68746 * 7 6 4 35 35 H 1.08998 * 109.50960 * 172.27805 * 8 7 6 36 36 H 1.08997 * 109.51187 * 292.37786 * 8 7 6 37 37 H 1.09004 * 109.48920 * 60.92473 * 11 10 9 38 38 H 1.09005 * 109.48527 * 180.99137 * 11 10 9 39 39 H 1.08994 * 109.58594 * 185.64151 * 12 11 10 40 40 H 1.09002 * 109.69791 * 65.28472 * 12 11 10 41 41 H 0.97006 * 120.00490 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58975 * 186.53948 * 22 13 12 43 43 H 1.09006 * 109.70530 * 66.18360 * 22 13 12 44 44 H 1.09006 * 109.49550 * 179.00650 * 23 10 9 45 45 H 1.09001 * 109.49570 * 299.05519 * 23 10 9 46 46 H 1.08998 * 109.67664 * 350.20418 * 24 6 4 47 47 H 1.09000 * 109.67478 * 110.74554 * 24 6 4 48 48 H 1.07996 * 125.89125 * 359.93292 * 26 25 2 49 49 H 1.07998 * 126.28821 * 179.77566 * 27 26 25 50 50 H 1.08007 * 126.28765 * 180.13932 * 28 27 26 51 51 H 1.08001 * 125.88741 * 179.74569 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4823 -1.8331 1.1412 6 7 1.9815 -0.0982 2.4300 7 6 2.5797 -0.7182 3.6230 8 6 3.4848 0.3159 4.3026 9 8 2.7450 1.5203 4.5173 10 6 2.2899 2.1501 3.3181 11 6 3.4860 2.4562 2.4147 12 6 4.4622 3.3733 3.1582 13 7 3.7344 4.5628 3.6208 14 6 4.1813 5.8193 3.3096 15 1 4.7297 5.9861 2.3942 16 6 3.9295 6.8786 4.1706 17 7 3.4443 6.6489 5.3723 18 14 4.2795 8.6302 3.6238 19 1 3.4675 8.9448 2.4209 20 1 3.9270 9.5701 4.7182 21 1 5.7216 8.7681 3.2975 22 6 2.5182 4.3784 4.4242 23 6 1.5631 3.4504 3.6668 24 6 1.3315 1.2130 2.5844 25 7 2.0183 -0.6906 -1.1962 26 6 2.8055 -0.1416 -2.1646 27 6 3.0403 -1.0832 -3.1010 28 6 2.3805 -2.2588 -2.6916 29 6 1.7611 -1.9886 -1.5246 30 1 -0.3633 -1.0236 0.0921 31 1 -0.3634 0.5915 0.8403 32 1 -0.3634 0.4319 -0.9325 33 1 1.7922 -1.0254 4.3111 34 1 3.1701 -1.5859 3.3288 35 1 3.8295 -0.0752 5.2598 36 1 4.3432 0.5240 3.6639 37 1 3.9898 1.5263 2.1507 38 1 3.1394 2.9525 1.5081 39 1 5.2649 3.6747 2.4853 40 1 4.8820 2.8457 4.0147 41 1 3.2680 7.3891 5.9739 42 1 2.0379 5.3432 4.5869 43 1 2.7762 3.9321 5.3846 44 1 1.2317 3.9390 2.7505 45 1 0.6991 3.2276 4.2929 46 1 1.0974 1.6245 1.6026 47 1 0.4154 1.1024 3.1646 48 1 3.1735 0.8735 -2.1814 49 1 3.6281 -0.9595 -3.9986 50 1 2.3697 -3.2020 -3.2177 51 1 1.1638 -2.6808 -0.9498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949075667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:13 Heat of formation + Delta-G solvation = 16.228997 kcal Electronic energy + Delta-G solvation = -32787.587916 eV Core-core repulsion = 28689.444878 eV Total energy + Delta-G solvation = -4098.143038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63425 -40.56687 -38.89384 -36.23194 -35.08288 -34.27634 -33.04232 -31.29393 -29.94322 -29.71198 -28.93000 -28.63814 -27.07219 -25.00670 -24.35030 -23.19721 -22.31869 -21.30825 -20.57561 -20.21588 -19.19749 -19.06152 -17.56821 -17.45320 -16.95774 -16.33113 -15.71732 -15.39919 -15.08870 -14.91755 -14.60705 -14.36809 -14.32692 -13.83491 -13.69392 -13.61646 -13.43967 -13.36665 -13.05105 -12.73967 -12.60765 -12.42612 -12.30809 -12.18460 -12.00371 -11.87435 -11.81464 -11.65434 -11.49451 -11.04966 -10.92388 -10.73223 -10.48032 -10.38106 -10.23564 -9.99943 -9.92787 -9.66485 -9.45395 -8.66952 -8.58703 -8.50610 -8.12578 -6.67120 -5.80668 -3.28182 2.04424 2.28868 2.52855 2.94318 3.07984 3.34864 3.40713 3.41058 3.87201 3.94867 4.36702 4.43675 4.45061 4.64881 4.78468 4.87878 4.98460 4.99498 5.12899 5.17416 5.17703 5.25124 5.28172 5.33012 5.38556 5.48542 5.52567 5.53259 5.61641 5.62232 5.65495 5.77433 5.90834 6.11417 6.15378 6.19683 6.27682 6.29872 6.38899 6.42930 6.57439 6.66317 6.90582 6.98780 7.01848 7.20688 7.30462 7.37256 7.45413 7.71861 7.76423 7.78965 8.43779 9.19570 9.80952 10.38629 11.26614 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003096 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.390632 B = 9043.095779 C =10093.797131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 H 0.122 0.878 4 C 0.509 3.491 5 O -0.525 6.525 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.044 3.956 9 O -0.353 6.353 10 C 0.116 3.884 11 C -0.157 4.157 12 C 0.152 3.848 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.905 3.095 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.176 3.824 23 C -0.128 4.128 24 C 0.076 3.924 25 N -0.434 5.434 26 C -0.020 4.020 27 C -0.197 4.197 28 C -0.213 4.213 29 C 0.020 3.980 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.160 0.840 49 H 0.134 0.866 50 H 0.132 0.868 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -14.539 -8.876 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.140 0.860 4 C 0.295 3.705 5 O -0.400 6.400 6 N -0.338 5.338 7 C -0.042 4.042 8 C -0.034 4.034 9 O -0.271 6.271 10 C 0.076 3.924 11 C -0.196 4.196 12 C 0.026 3.974 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.735 3.265 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.050 3.950 23 C -0.167 4.167 24 C -0.046 4.046 25 N -0.111 5.111 26 C -0.148 4.148 27 C -0.222 4.222 28 C -0.237 4.237 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.177 0.823 49 H 0.152 0.848 50 H 0.150 0.850 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.062 -14.752 -8.300 18.341 hybrid contribution 0.304 0.777 -0.406 0.928 sum -6.758 -13.975 -8.705 17.797 Atomic orbital electron populations 1.22190 0.91010 1.04182 1.04495 1.21260 0.97070 0.97478 0.83339 0.86029 1.20544 0.79036 0.86616 0.84300 1.90739 1.45842 1.18186 1.85268 1.48072 1.56966 1.20774 1.07982 1.22372 0.98141 0.97401 0.86287 1.22932 0.93917 0.85229 1.01311 1.88099 1.72156 1.37369 1.29516 1.21687 0.93295 0.92125 0.85283 1.22582 0.98068 0.99780 0.99193 1.20747 0.92505 0.88512 0.95677 1.44013 1.24940 1.00618 1.61772 1.19147 1.33068 0.84450 1.01656 0.91863 1.25123 1.00876 0.98674 0.94815 1.69949 1.48470 1.30421 1.06057 0.86341 0.78259 0.84436 0.77505 1.21015 1.21581 1.20916 1.20763 0.85431 0.97706 0.91095 1.22241 0.99049 0.93569 1.01863 1.22736 0.96964 0.82608 1.02325 1.43752 1.40005 1.10588 1.16784 1.21835 1.01502 1.00029 0.91480 1.20845 1.06487 0.93832 1.01018 1.20837 1.05408 0.99225 0.98247 1.21659 1.05581 0.85519 0.98186 0.91087 0.89733 0.90102 0.90610 0.88502 0.87883 0.92259 0.93012 0.91574 0.93071 0.96040 0.93505 0.88794 0.95495 0.91210 0.92244 0.89188 0.90099 0.82278 0.84849 0.84991 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.87 37.16 0.33 -0.95 16 2 C 0.12 1.20 2.50 -69.08 -0.17 1.03 16 3 H 0.12 1.15 6.98 -51.93 -0.36 0.79 16 4 C 0.51 6.47 6.98 -10.99 -0.08 6.39 16 5 O -0.52 -8.32 14.68 5.56 0.08 -8.24 16 6 N -0.60 -7.16 2.53 -172.57 -0.44 -7.60 16 7 C 0.08 0.93 6.62 -3.53 -0.02 0.91 16 8 C 0.04 0.56 6.60 37.32 0.25 0.81 16 9 O -0.35 -5.66 9.01 -35.23 -0.32 -5.98 16 10 C 0.12 1.73 0.68 -90.73 -0.06 1.67 16 11 C -0.16 -2.50 4.31 -26.64 -0.11 -2.61 16 12 C 0.15 3.08 6.28 -3.71 -0.02 3.06 16 13 N -0.59 -14.15 3.00 -172.32 -0.52 -14.67 16 14 C -0.25 -6.71 9.61 -15.06 -0.14 -6.86 16 15 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 16 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 17 N -0.90 -25.48 10.88 55.49 0.60 -24.88 16 18 Si 0.90 21.09 29.57 -169.99 -5.03 16.06 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.18 3.98 5.04 -3.71 -0.02 3.96 16 23 C -0.13 -2.16 5.10 -26.64 -0.14 -2.30 16 24 C 0.08 0.86 4.22 -3.78 -0.02 0.85 16 25 N -0.43 -5.22 2.51 -111.26 -0.28 -5.50 16 26 C -0.02 -0.24 11.39 -16.75 -0.19 -0.43 16 27 C -0.20 -2.35 10.86 -39.78 -0.43 -2.79 16 28 C -0.21 -2.60 10.86 -39.78 -0.43 -3.04 16 29 C 0.02 0.25 9.44 -16.75 -0.16 0.09 16 30 H 0.07 0.59 8.06 -51.92 -0.42 0.17 16 31 H 0.08 0.57 6.28 -51.93 -0.33 0.24 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.16 7.13 -51.93 -0.37 0.79 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.81 6.29 -51.93 -0.33 0.49 16 37 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 43 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.85 4.86 -51.93 -0.25 0.60 16 47 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 48 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 49 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 50 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 51 H 0.15 1.80 7.98 -52.49 -0.42 1.38 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -31.89 388.51 -9.65 -41.54 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.10 Total: 3.60 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.51 Total: -0.18 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.63 Total: -52.65 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.24 Total: -14.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.89 -9.65 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949075667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.765 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds