Wall clock time and date at job start Wed Apr 1 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47323 * 2 1 4 4 C 1.50700 * 109.47124 * 120.00104 * 2 1 3 5 5 O 1.21280 * 120.00111 * 104.49308 * 4 2 1 6 6 N 1.34775 * 119.99973 * 284.49376 * 4 2 1 7 7 C 1.47157 * 120.98576 * 185.79951 * 6 4 2 8 8 C 1.53306 * 108.36953 * 129.40520 * 7 6 4 9 9 O 1.42966 * 109.22681 * 52.35201 * 8 7 6 10 10 C 1.42893 * 114.21246 * 297.50837 * 9 8 7 11 11 C 1.52992 * 109.55795 * 302.51769 * 10 9 8 12 12 C 1.53190 * 109.35108 * 300.95601 * 11 10 9 13 13 N 1.46927 * 108.77506 * 305.43122 * 12 11 10 14 14 C 1.36942 * 120.64093 * 233.64592 * 13 12 11 15 15 H 1.08001 * 119.99839 * 29.55315 * 14 13 12 16 16 C 1.38810 * 120.00295 * 209.55556 * 14 13 12 17 17 N 1.31614 * 119.99921 * 10.26656 * 16 14 13 18 18 Si 1.86801 * 119.99962 * 190.26463 * 16 14 13 19 19 H 1.48503 * 109.46837 * 60.00101 * 18 16 14 20 20 H 1.48506 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47109 * 299.99879 * 18 16 14 22 22 C 1.46924 * 118.72277 * 53.66666 * 13 12 11 23 23 C 1.52992 * 109.55091 * 182.21775 * 10 9 8 24 24 C 1.47154 * 120.98563 * 5.52146 * 6 4 2 25 25 N 1.46503 * 109.47084 * 240.00064 * 2 1 3 26 26 C 1.36343 * 125.63447 * 120.00374 * 25 2 1 27 27 C 1.34855 * 108.21612 * 180.20691 * 26 25 2 28 28 C 1.40887 * 107.41414 * 359.64021 * 27 26 25 29 29 C 1.34849 * 107.42026 * 0.35794 * 28 27 26 30 30 H 1.09008 * 109.46889 * 185.14124 * 1 2 3 31 31 H 1.08996 * 109.47442 * 305.14462 * 1 2 3 32 32 H 1.09000 * 109.47546 * 65.14596 * 1 2 3 33 33 H 1.08997 * 109.68184 * 249.12046 * 7 6 4 34 34 H 1.08995 * 109.68359 * 9.68746 * 7 6 4 35 35 H 1.08998 * 109.50960 * 172.27805 * 8 7 6 36 36 H 1.08997 * 109.51187 * 292.37786 * 8 7 6 37 37 H 1.09004 * 109.48920 * 60.92473 * 11 10 9 38 38 H 1.09005 * 109.48527 * 180.99137 * 11 10 9 39 39 H 1.08994 * 109.58594 * 185.64151 * 12 11 10 40 40 H 1.09002 * 109.69791 * 65.28472 * 12 11 10 41 41 H 0.97006 * 120.00490 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58975 * 186.53948 * 22 13 12 43 43 H 1.09006 * 109.70530 * 66.18360 * 22 13 12 44 44 H 1.09006 * 109.49550 * 179.00650 * 23 10 9 45 45 H 1.09001 * 109.49570 * 299.05519 * 23 10 9 46 46 H 1.08998 * 109.67664 * 350.20418 * 24 6 4 47 47 H 1.09000 * 109.67478 * 110.74554 * 24 6 4 48 48 H 1.07996 * 125.89125 * 359.93292 * 26 25 2 49 49 H 1.07998 * 126.28821 * 179.77566 * 27 26 25 50 50 H 1.08007 * 126.28765 * 180.13932 * 28 27 26 51 51 H 1.08001 * 125.88741 * 179.74569 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4823 -1.8331 1.1412 6 7 1.9815 -0.0982 2.4300 7 6 2.5797 -0.7182 3.6230 8 6 3.4848 0.3159 4.3026 9 8 2.7450 1.5203 4.5173 10 6 2.2899 2.1501 3.3181 11 6 3.4860 2.4562 2.4147 12 6 4.4622 3.3733 3.1582 13 7 3.7344 4.5628 3.6208 14 6 4.1813 5.8193 3.3096 15 1 4.7297 5.9861 2.3942 16 6 3.9295 6.8786 4.1706 17 7 3.4443 6.6489 5.3723 18 14 4.2795 8.6302 3.6238 19 1 3.4675 8.9448 2.4209 20 1 3.9270 9.5701 4.7182 21 1 5.7216 8.7681 3.2975 22 6 2.5182 4.3784 4.4242 23 6 1.5631 3.4504 3.6668 24 6 1.3315 1.2130 2.5844 25 7 2.0183 -0.6906 -1.1962 26 6 2.8055 -0.1416 -2.1646 27 6 3.0403 -1.0832 -3.1010 28 6 2.3805 -2.2588 -2.6916 29 6 1.7611 -1.9886 -1.5246 30 1 -0.3633 -1.0236 0.0921 31 1 -0.3634 0.5915 0.8403 32 1 -0.3634 0.4319 -0.9325 33 1 1.7922 -1.0254 4.3111 34 1 3.1701 -1.5859 3.3288 35 1 3.8295 -0.0752 5.2598 36 1 4.3432 0.5240 3.6639 37 1 3.9898 1.5263 2.1507 38 1 3.1394 2.9525 1.5081 39 1 5.2649 3.6747 2.4853 40 1 4.8820 2.8457 4.0147 41 1 3.2680 7.3891 5.9739 42 1 2.0379 5.3432 4.5869 43 1 2.7762 3.9321 5.3846 44 1 1.2317 3.9390 2.7505 45 1 0.6991 3.2276 4.2929 46 1 1.0974 1.6245 1.6026 47 1 0.4154 1.1024 3.1646 48 1 3.1735 0.8735 -2.1814 49 1 3.6281 -0.9595 -3.9986 50 1 2.3697 -3.2020 -3.2177 51 1 1.1638 -2.6808 -0.9498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949075667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:12 Heat of formation + Delta-G solvation = -1.680690 kcal Electronic energy + Delta-G solvation = -32788.364538 eV Core-core repulsion = 28689.444878 eV Total energy + Delta-G solvation = -4098.919660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53741 -41.60516 -40.01581 -37.76644 -36.09088 -35.21725 -34.58177 -32.88752 -31.47154 -30.75130 -29.92763 -29.54293 -28.39579 -26.08551 -25.75198 -24.36608 -23.75607 -22.67858 -21.49459 -21.20887 -20.47484 -20.06298 -18.86812 -18.46731 -18.28502 -17.36089 -16.91964 -16.66993 -16.47353 -16.18473 -15.87703 -15.46663 -15.22082 -15.15033 -15.10023 -14.84106 -14.60031 -14.50768 -14.30844 -13.79075 -13.49707 -13.33468 -13.24559 -13.17425 -13.10001 -13.01928 -12.98081 -12.85406 -12.75041 -12.66981 -12.60659 -12.26305 -12.08451 -11.86407 -11.76704 -11.48966 -11.34780 -10.92040 -10.84368 -10.50753 -9.63456 -9.54005 -9.01295 -8.61305 -7.82864 -5.33424 1.13723 1.36284 1.49519 1.50330 1.57391 1.66906 2.08455 2.18645 2.52468 2.77395 3.08423 3.31599 3.56358 3.61998 3.73307 3.74697 3.81372 3.86922 3.99018 4.11188 4.15224 4.22305 4.34724 4.39746 4.42812 4.51718 4.53858 4.60569 4.65543 4.70191 4.73716 4.74412 4.78990 4.88192 4.93997 5.01495 5.03888 5.06215 5.15365 5.22280 5.31675 5.41557 5.43355 5.54016 5.66508 5.89284 6.07996 6.11402 6.31790 6.33045 6.43811 6.45926 6.84784 7.19378 7.89376 8.41494 9.21703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003096 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.390632 B = 9043.095779 C =10093.797131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.114 3.886 3 H 0.137 0.863 4 C 0.509 3.491 5 O -0.561 6.561 6 N -0.601 5.601 7 C 0.086 3.914 8 C 0.045 3.955 9 O -0.379 6.379 10 C 0.117 3.883 11 C -0.143 4.143 12 C 0.150 3.850 13 N -0.607 5.607 14 C -0.263 4.263 15 H 0.066 0.934 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.296 1.296 21 H -0.280 1.280 22 C 0.184 3.816 23 C -0.116 4.116 24 C 0.085 3.915 25 N -0.438 5.438 26 C -0.028 4.028 27 C -0.213 4.213 28 C -0.227 4.227 29 C 0.005 3.995 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.004 0.996 41 H 0.249 0.751 42 H 0.060 0.940 43 H -0.009 1.009 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.101 0.899 48 H 0.180 0.820 49 H 0.147 0.853 50 H 0.142 0.858 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 -14.824 -10.490 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 H 0.155 0.845 4 C 0.296 3.704 5 O -0.439 6.439 6 N -0.334 5.334 7 C -0.037 4.037 8 C -0.033 4.033 9 O -0.298 6.298 10 C 0.077 3.923 11 C -0.182 4.182 12 C 0.024 3.976 13 N -0.331 5.331 14 C -0.393 4.393 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.796 3.204 19 H -0.199 1.199 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.058 3.942 23 C -0.156 4.156 24 C -0.037 4.037 25 N -0.115 5.115 26 C -0.156 4.156 27 C -0.238 4.238 28 C -0.252 4.252 29 C -0.124 4.124 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.009 0.991 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.134 0.866 47 H 0.119 0.881 48 H 0.197 0.803 49 H 0.165 0.835 50 H 0.160 0.840 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.340 -15.053 -9.929 19.868 hybrid contribution 0.806 0.823 0.154 1.162 sum -7.534 -14.230 -9.774 18.836 Atomic orbital electron populations 1.22207 0.88950 1.04382 1.05820 1.21458 0.98613 0.97464 0.81644 0.84496 1.20948 0.78270 0.86241 0.84904 1.90730 1.47494 1.19883 1.85761 1.48101 1.56663 1.20779 1.07874 1.22314 0.98303 0.96628 0.86436 1.23028 0.93499 0.84590 1.02140 1.88073 1.72691 1.38614 1.30386 1.21619 0.93349 0.92192 0.85132 1.22401 0.97568 0.99069 0.99129 1.20818 0.93461 0.87971 0.95308 1.44263 1.25950 1.00959 1.61897 1.19489 1.32454 0.85767 1.01592 0.91661 1.25853 1.01370 1.02285 0.94909 1.70140 1.49944 1.30985 1.07130 0.85341 0.78111 0.79895 0.77052 1.19899 1.22189 1.20604 1.20486 0.86051 0.97062 0.90567 1.22034 0.98215 0.93409 1.01916 1.22687 0.96162 0.81363 1.03486 1.43908 1.39950 1.10485 1.17179 1.22254 1.01140 1.00928 0.91322 1.21148 1.06892 0.93892 1.01862 1.21131 1.05535 0.99986 0.98525 1.21799 1.06059 0.86113 0.98471 0.91620 0.87877 0.89131 0.89147 0.88931 0.86464 0.93476 0.91862 0.90357 0.93571 0.97762 0.94139 0.92157 0.99107 0.89801 0.90312 0.86619 0.88051 0.80287 0.83536 0.83990 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.87 71.98 0.64 -1.28 16 2 C 0.11 2.02 2.50 44.24 0.11 2.13 16 3 H 0.14 2.00 6.98 -2.39 -0.02 1.98 16 4 C 0.51 11.61 6.98 87.66 0.61 12.22 16 5 O -0.56 -16.95 14.68 -3.03 -0.04 -16.99 16 6 N -0.60 -12.41 2.53 -818.27 -2.07 -14.48 16 7 C 0.09 1.80 6.62 86.36 0.57 2.37 16 8 C 0.04 1.09 6.60 72.08 0.48 1.57 16 9 O -0.38 -11.63 9.01 -148.98 -1.34 -12.98 16 10 C 0.12 3.20 0.68 -10.86 -0.01 3.20 16 11 C -0.14 -4.25 4.31 30.65 0.13 -4.12 16 12 C 0.15 6.07 6.28 86.36 0.54 6.61 16 13 N -0.61 -29.35 3.00 -699.10 -2.09 -31.45 16 14 C -0.26 -14.01 9.61 84.03 0.81 -13.21 16 15 H 0.07 3.38 7.85 -2.91 -0.02 3.36 16 16 C -0.05 -2.66 5.08 84.86 0.43 -2.23 16 17 N -0.94 -54.27 10.88 21.65 0.24 -54.03 16 18 Si 0.97 43.65 29.57 68.60 2.03 45.68 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C 0.18 8.46 5.04 86.36 0.44 8.90 16 23 C -0.12 -3.72 5.10 30.66 0.16 -3.57 16 24 C 0.09 1.58 4.22 86.19 0.36 1.95 16 25 N -0.44 -9.60 2.51 -505.91 -1.27 -10.86 16 26 C -0.03 -0.60 11.39 83.21 0.95 0.35 16 27 C -0.21 -4.78 10.86 22.14 0.24 -4.54 16 28 C -0.23 -5.34 10.86 22.14 0.24 -5.10 16 29 C 0.01 0.13 9.44 83.21 0.79 0.91 16 30 H 0.06 0.90 8.06 -2.38 -0.02 0.89 16 31 H 0.10 0.88 6.28 -2.39 -0.02 0.87 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 2.08 7.13 -2.39 -0.02 2.06 16 35 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.25 6.29 -2.39 -0.02 1.24 16 37 H 0.06 1.76 6.16 -2.38 -0.01 1.75 16 38 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 40 H 0.00 0.19 7.83 -2.39 -0.02 0.17 16 41 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 42 H 0.06 3.17 5.93 -2.39 -0.01 3.16 16 43 H -0.01 -0.48 7.83 -2.38 -0.02 -0.50 16 44 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.12 1.59 4.86 -2.39 -0.01 1.57 16 47 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 48 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 49 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 50 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 51 H 0.16 3.52 7.98 -2.91 -0.02 3.50 16 Total: -1.00 -71.23 388.51 3.84 -67.39 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.92 Total: 21.57 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 7.48 Total: 6.16 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -5.20 Total: -110.82 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.39 Total: -29.97 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.23 3.84 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949075667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.705 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds