Wall clock time and date at job start Wed Apr 1 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46553 * 2 1 4 4 C 1.50697 * 109.46947 * 240.00116 * 2 1 3 5 5 O 1.21282 * 120.00161 * 270.07813 * 4 2 1 6 6 N 1.34781 * 120.00066 * 90.07850 * 4 2 1 7 7 C 1.47157 * 120.98706 * 355.89877 * 6 4 2 8 8 C 1.53292 * 108.37601 * 230.59630 * 7 6 4 9 9 O 1.42964 * 109.23165 * 307.65560 * 8 7 6 10 10 C 1.42897 * 114.20946 * 62.48420 * 9 8 7 11 11 C 1.52981 * 109.56726 * 57.48207 * 10 9 8 12 12 C 1.53190 * 109.35308 * 59.05178 * 11 10 9 13 13 N 1.46935 * 108.77830 * 54.57260 * 12 11 10 14 14 C 1.36928 * 120.64378 * 126.30048 * 13 12 11 15 15 H 1.07998 * 120.00324 * 332.94099 * 14 13 12 16 16 C 1.38819 * 120.00163 * 152.94674 * 14 13 12 17 17 N 1.31612 * 119.99468 * 334.30625 * 16 14 13 18 18 Si 1.86798 * 120.00051 * 154.30304 * 16 14 13 19 19 H 1.48498 * 109.46885 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47430 * 300.00063 * 18 16 14 21 21 H 1.48496 * 109.47087 * 60.00272 * 18 16 14 22 22 C 1.46927 * 118.70850 * 306.57323 * 13 12 11 23 23 C 1.52764 * 109.00269 * 53.38446 * 22 13 12 24 24 C 1.47148 * 120.98793 * 175.90310 * 6 4 2 25 25 N 1.46502 * 109.46916 * 119.99995 * 2 1 3 26 26 C 1.36338 * 125.63030 * 59.69586 * 25 2 1 27 27 C 1.34852 * 108.21310 * 179.82772 * 26 25 2 28 28 C 1.40895 * 107.41662 * 0.42238 * 27 26 25 29 29 C 1.34846 * 107.41779 * 359.73677 * 28 27 26 30 30 H 1.09006 * 109.46923 * 303.66619 * 1 2 3 31 31 H 1.09007 * 109.47037 * 63.65965 * 1 2 3 32 32 H 1.08998 * 109.47121 * 183.65950 * 1 2 3 33 33 H 1.09007 * 109.68332 * 110.87682 * 7 6 4 34 34 H 1.09002 * 109.68402 * 350.32301 * 7 6 4 35 35 H 1.09001 * 109.51108 * 187.72890 * 8 7 6 36 36 H 1.08997 * 109.50643 * 67.57854 * 8 7 6 37 37 H 1.09008 * 109.48744 * 299.09062 * 11 10 9 38 38 H 1.08996 * 109.51151 * 179.02848 * 11 10 9 39 39 H 1.08999 * 109.58953 * 294.78025 * 12 11 10 40 40 H 1.08997 * 109.70342 * 174.43157 * 12 11 10 41 41 H 0.97001 * 120.00523 * 354.24331 * 17 16 14 42 42 H 1.09000 * 109.58789 * 173.21806 * 22 13 12 43 43 H 1.09000 * 109.59098 * 293.65350 * 22 13 12 44 44 H 1.08999 * 109.56009 * 185.58690 * 23 22 13 45 45 H 1.09003 * 109.37276 * 65.57421 * 23 22 13 46 46 H 1.08997 * 109.68137 * 9.78287 * 24 6 4 47 47 H 1.09003 * 109.67284 * 249.24484 * 24 6 4 48 48 H 1.07998 * 125.89767 * 359.96103 * 26 25 2 49 49 H 1.08003 * 126.29291 * 180.16386 * 27 26 25 50 50 H 1.08003 * 126.28747 * 179.73336 * 28 27 26 51 51 H 1.07996 * 125.89441 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.2331 -1.9061 -1.2009 6 7 2.2585 -0.0169 -2.3639 7 6 1.9381 1.4167 -2.4516 8 6 1.1005 1.6482 -3.7144 9 8 1.7761 1.0795 -4.8386 10 6 1.9542 -0.3362 -4.7605 11 6 0.5928 -1.0160 -4.6033 12 6 -0.2944 -0.6582 -5.7998 13 7 0.4164 -1.0085 -7.0371 14 6 -0.1712 -1.8143 -7.9754 15 1 -0.9188 -2.5344 -7.6769 16 6 0.1939 -1.7059 -9.3103 17 7 0.6785 -0.5718 -9.7698 18 14 -0.0024 -3.1695 -10.4542 19 1 0.4564 -2.7978 -11.8167 20 1 0.8123 -4.3043 -9.9505 21 1 -1.4314 -3.5701 -10.5047 22 6 1.7723 -0.4822 -7.2453 23 6 2.6349 -0.8376 -6.0356 24 6 2.8329 -0.6709 -3.5503 25 7 2.0184 -0.6906 1.1962 26 6 1.7559 -1.9868 1.5277 27 6 2.3799 -2.2587 2.6919 28 6 3.0442 -1.0846 3.0986 29 6 2.8056 -0.1417 2.1646 30 1 -0.3633 0.5697 0.8554 31 1 -0.3633 0.4560 -0.9210 32 1 -0.3633 -1.0256 0.0656 33 1 2.8597 1.9958 -2.5111 34 1 1.3693 1.7202 -1.5728 35 1 0.9683 2.7186 -3.8723 36 1 0.1262 1.1738 -3.5969 37 1 0.1189 -0.6726 -3.6836 38 1 0.7282 -2.0967 -4.5611 39 1 -0.5069 0.4108 -5.7905 40 1 -1.2287 -1.2168 -5.7445 41 1 0.7030 0.2121 -9.1988 42 1 2.2029 -0.9265 -8.1427 43 1 1.7308 0.6014 -7.3552 44 1 3.6134 -0.3676 -6.1345 45 1 2.7550 -1.9197 -5.9825 46 1 2.8550 -1.7502 -3.3999 47 1 3.8450 -0.3025 -3.7185 48 1 1.1541 -2.6773 0.9556 49 1 2.3688 -3.2018 3.2181 50 1 3.6357 -0.9624 3.9939 51 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949075668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:17 Heat of formation + Delta-G solvation = 13.326048 kcal Electronic energy + Delta-G solvation = -32557.526452 eV Core-core repulsion = 28459.257533 eV Total energy + Delta-G solvation = -4098.268919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71081 -40.64532 -38.94526 -36.53493 -34.99507 -34.44197 -33.20066 -31.30144 -30.01379 -29.64108 -28.98127 -28.83009 -27.20125 -24.87723 -24.02602 -23.49155 -22.42633 -21.41050 -20.67482 -20.24088 -19.23817 -19.08778 -17.72404 -17.63522 -17.43172 -16.03654 -15.93810 -15.60340 -15.15993 -14.95251 -14.73975 -14.27224 -14.13670 -13.90499 -13.80924 -13.78716 -13.52364 -13.46464 -13.27552 -12.83156 -12.60591 -12.52232 -12.44839 -12.22451 -12.07348 -12.04774 -11.99699 -11.80429 -11.60636 -11.03654 -10.73009 -10.59878 -10.51977 -10.40307 -10.24438 -10.01952 -9.93998 -9.59418 -9.30263 -8.78645 -8.64322 -8.35883 -8.23955 -6.87806 -6.06731 -3.21368 1.93589 2.20609 2.43368 2.89338 2.97604 3.49745 3.53348 3.71199 3.76628 3.86031 4.16506 4.34544 4.53452 4.59024 4.63500 4.76337 4.86745 4.89069 5.04664 5.05874 5.09575 5.15850 5.19899 5.24715 5.38349 5.44647 5.49171 5.51983 5.53111 5.55110 5.60640 5.71463 5.84947 6.05906 6.09222 6.14339 6.17688 6.20080 6.29976 6.37184 6.44482 6.60279 6.80386 6.87947 6.95169 7.04366 7.09653 7.20326 7.23523 7.35745 7.74843 8.00311 8.58361 9.12636 9.85614 10.30924 11.22180 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002613 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.343710 B =10711.180942 C =11170.392347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.117 0.883 4 C 0.507 3.493 5 O -0.518 6.518 6 N -0.605 5.605 7 C 0.067 3.933 8 C 0.044 3.956 9 O -0.356 6.356 10 C 0.118 3.882 11 C -0.151 4.151 12 C 0.155 3.845 13 N -0.597 5.597 14 C -0.351 4.351 15 H 0.055 0.945 16 C -0.023 4.023 17 N -0.914 5.914 18 Si 1.062 2.938 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.157 3.843 23 C -0.121 4.121 24 C 0.090 3.910 25 N -0.437 5.437 26 C 0.022 3.978 27 C -0.213 4.213 28 C -0.195 4.195 29 C -0.026 4.026 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.270 0.730 42 H 0.079 0.921 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.160 0.840 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 6.240 22.372 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.135 0.865 4 C 0.292 3.708 5 O -0.392 6.392 6 N -0.340 5.340 7 C -0.056 4.056 8 C -0.034 4.034 9 O -0.274 6.274 10 C 0.078 3.922 11 C -0.191 4.191 12 C 0.029 3.971 13 N -0.321 5.321 14 C -0.480 4.480 15 H 0.072 0.928 16 C -0.226 4.226 17 N -0.554 5.554 18 Si 0.892 3.108 19 H -0.211 1.211 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.031 3.969 23 C -0.161 4.161 24 C -0.032 4.032 25 N -0.115 5.115 26 C -0.107 4.107 27 C -0.237 4.237 28 C -0.220 4.220 29 C -0.154 4.154 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.177 0.823 49 H 0.152 0.848 50 H 0.152 0.848 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.094 5.305 20.348 21.254 hybrid contribution -0.339 0.528 1.938 2.037 sum 2.756 5.833 22.285 23.200 Atomic orbital electron populations 1.22124 0.90792 1.04719 1.04002 1.21299 0.97254 0.97042 0.83379 0.86546 1.20547 0.78216 0.87788 0.84203 1.90752 1.51040 1.14145 1.83306 1.48100 1.63040 1.10164 1.12672 1.22615 1.01286 0.81291 1.00383 1.22899 0.95170 0.99762 0.85553 1.88079 1.77688 1.20923 1.40728 1.21758 0.94923 0.81004 0.94491 1.22505 0.96250 1.00954 0.99360 1.20745 0.93531 0.96853 0.85996 1.44079 1.11411 1.58184 1.18412 1.19955 1.25069 1.14095 0.88845 0.92766 1.25809 0.99753 1.01853 0.95143 1.70769 1.46800 0.99850 1.38001 0.83565 0.75943 0.75084 0.76201 1.21088 1.22074 1.22037 1.20764 0.84623 0.96532 0.94938 1.22011 0.98724 1.00602 0.94745 1.22515 0.96918 1.00044 0.83746 1.43805 1.40081 1.10792 1.16803 1.21813 1.05244 0.85556 0.98091 1.20886 1.05179 0.99335 0.98346 1.20862 1.06295 0.93846 1.01015 1.21765 1.02059 0.99865 0.91739 0.90217 0.90076 0.90592 0.90106 0.89319 0.87794 0.92155 0.93097 0.91247 0.96352 0.92960 0.91936 0.90225 0.95603 0.92038 0.90754 0.88172 0.90749 0.82286 0.84843 0.84843 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.07 37.16 0.34 -0.83 16 2 C 0.12 1.05 2.52 -69.08 -0.17 0.88 16 3 H 0.12 0.74 6.40 -51.93 -0.33 0.40 16 4 C 0.51 6.29 6.88 -10.98 -0.08 6.21 16 5 O -0.52 -8.42 14.62 5.56 0.08 -8.34 16 6 N -0.61 -7.06 2.52 -172.30 -0.43 -7.50 16 7 C 0.07 0.57 6.33 -3.53 -0.02 0.55 16 8 C 0.04 0.48 6.60 37.31 0.25 0.73 16 9 O -0.36 -5.54 9.01 -35.23 -0.32 -5.86 16 10 C 0.12 1.89 0.68 -90.50 -0.06 1.83 16 11 C -0.15 -2.61 4.33 -26.64 -0.12 -2.72 16 12 C 0.16 3.24 6.29 -3.71 -0.02 3.21 16 13 N -0.60 -14.81 2.86 -172.58 -0.49 -15.30 16 14 C -0.35 -9.75 9.49 -15.06 -0.14 -9.89 16 15 H 0.05 1.52 7.95 -52.49 -0.42 1.11 16 16 C -0.02 -0.66 4.67 -17.43 -0.08 -0.74 16 17 N -0.91 -27.23 12.40 55.49 0.69 -26.54 16 18 Si 1.06 25.20 29.99 -169.99 -5.10 20.10 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.16 3.64 4.45 -3.93 -0.02 3.62 16 23 C -0.12 -2.23 5.09 -26.85 -0.14 -2.37 16 24 C 0.09 1.26 5.30 -3.56 -0.02 1.24 16 25 N -0.44 -4.74 2.58 -111.26 -0.29 -5.03 16 26 C 0.02 0.27 9.33 -16.75 -0.16 0.12 16 27 C -0.21 -2.48 10.86 -39.78 -0.43 -2.91 16 28 C -0.20 -2.08 10.86 -39.78 -0.43 -2.52 16 29 C -0.03 -0.26 11.39 -16.75 -0.19 -0.45 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 32 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.48 5.26 -51.93 -0.27 0.20 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 37 H 0.05 0.78 6.16 -51.92 -0.32 0.46 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.39 7.83 -51.93 -0.41 -0.02 16 40 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 41 H 0.27 8.12 6.77 -40.82 -0.28 7.84 16 42 H 0.08 2.07 6.29 -51.93 -0.33 1.74 16 43 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.16 1.92 7.77 -52.49 -0.41 1.51 16 49 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 50 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 51 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -33.97 389.37 -9.58 -43.54 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.09 Total: 3.09 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.53 Total: -54.36 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.24 Total: -14.20 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.97 -9.58 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949075668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.871 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds