Wall clock time and date at job start Wed Apr 1 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46553 * 2 1 4 4 C 1.50697 * 109.46947 * 240.00116 * 2 1 3 5 5 O 1.21282 * 120.00161 * 270.07813 * 4 2 1 6 6 N 1.34781 * 120.00066 * 90.07850 * 4 2 1 7 7 C 1.47157 * 120.98706 * 355.89877 * 6 4 2 8 8 C 1.53292 * 108.37601 * 230.59630 * 7 6 4 9 9 O 1.42964 * 109.23165 * 307.65560 * 8 7 6 10 10 C 1.42897 * 114.20946 * 62.48420 * 9 8 7 11 11 C 1.52981 * 109.56726 * 57.48207 * 10 9 8 12 12 C 1.53190 * 109.35308 * 59.05178 * 11 10 9 13 13 N 1.46935 * 108.77830 * 54.57260 * 12 11 10 14 14 C 1.36928 * 120.64378 * 126.30048 * 13 12 11 15 15 H 1.07998 * 120.00324 * 332.94099 * 14 13 12 16 16 C 1.38819 * 120.00163 * 152.94674 * 14 13 12 17 17 N 1.31612 * 119.99468 * 334.30625 * 16 14 13 18 18 Si 1.86798 * 120.00051 * 154.30304 * 16 14 13 19 19 H 1.48498 * 109.46885 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47430 * 300.00063 * 18 16 14 21 21 H 1.48496 * 109.47087 * 60.00272 * 18 16 14 22 22 C 1.46927 * 118.70850 * 306.57323 * 13 12 11 23 23 C 1.52764 * 109.00269 * 53.38446 * 22 13 12 24 24 C 1.47148 * 120.98793 * 175.90310 * 6 4 2 25 25 N 1.46502 * 109.46916 * 119.99995 * 2 1 3 26 26 C 1.36338 * 125.63030 * 59.69586 * 25 2 1 27 27 C 1.34852 * 108.21310 * 179.82772 * 26 25 2 28 28 C 1.40895 * 107.41662 * 0.42238 * 27 26 25 29 29 C 1.34846 * 107.41779 * 359.73677 * 28 27 26 30 30 H 1.09006 * 109.46923 * 303.66619 * 1 2 3 31 31 H 1.09007 * 109.47037 * 63.65965 * 1 2 3 32 32 H 1.08998 * 109.47121 * 183.65950 * 1 2 3 33 33 H 1.09007 * 109.68332 * 110.87682 * 7 6 4 34 34 H 1.09002 * 109.68402 * 350.32301 * 7 6 4 35 35 H 1.09001 * 109.51108 * 187.72890 * 8 7 6 36 36 H 1.08997 * 109.50643 * 67.57854 * 8 7 6 37 37 H 1.09008 * 109.48744 * 299.09062 * 11 10 9 38 38 H 1.08996 * 109.51151 * 179.02848 * 11 10 9 39 39 H 1.08999 * 109.58953 * 294.78025 * 12 11 10 40 40 H 1.08997 * 109.70342 * 174.43157 * 12 11 10 41 41 H 0.97001 * 120.00523 * 354.24331 * 17 16 14 42 42 H 1.09000 * 109.58789 * 173.21806 * 22 13 12 43 43 H 1.09000 * 109.59098 * 293.65350 * 22 13 12 44 44 H 1.08999 * 109.56009 * 185.58690 * 23 22 13 45 45 H 1.09003 * 109.37276 * 65.57421 * 23 22 13 46 46 H 1.08997 * 109.68137 * 9.78287 * 24 6 4 47 47 H 1.09003 * 109.67284 * 249.24484 * 24 6 4 48 48 H 1.07998 * 125.89767 * 359.96103 * 26 25 2 49 49 H 1.08003 * 126.29291 * 180.16386 * 27 26 25 50 50 H 1.08003 * 126.28747 * 179.73336 * 28 27 26 51 51 H 1.07996 * 125.89441 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.2331 -1.9061 -1.2009 6 7 2.2585 -0.0169 -2.3639 7 6 1.9381 1.4167 -2.4516 8 6 1.1005 1.6482 -3.7144 9 8 1.7761 1.0795 -4.8386 10 6 1.9542 -0.3362 -4.7605 11 6 0.5928 -1.0160 -4.6033 12 6 -0.2944 -0.6582 -5.7998 13 7 0.4164 -1.0085 -7.0371 14 6 -0.1712 -1.8143 -7.9754 15 1 -0.9188 -2.5344 -7.6769 16 6 0.1939 -1.7059 -9.3103 17 7 0.6785 -0.5718 -9.7698 18 14 -0.0024 -3.1695 -10.4542 19 1 0.4564 -2.7978 -11.8167 20 1 0.8123 -4.3043 -9.9505 21 1 -1.4314 -3.5701 -10.5047 22 6 1.7723 -0.4822 -7.2453 23 6 2.6349 -0.8376 -6.0356 24 6 2.8329 -0.6709 -3.5503 25 7 2.0184 -0.6906 1.1962 26 6 1.7559 -1.9868 1.5277 27 6 2.3799 -2.2587 2.6919 28 6 3.0442 -1.0846 3.0986 29 6 2.8056 -0.1417 2.1646 30 1 -0.3633 0.5697 0.8554 31 1 -0.3633 0.4560 -0.9210 32 1 -0.3633 -1.0256 0.0656 33 1 2.8597 1.9958 -2.5111 34 1 1.3693 1.7202 -1.5728 35 1 0.9683 2.7186 -3.8723 36 1 0.1262 1.1738 -3.5969 37 1 0.1189 -0.6726 -3.6836 38 1 0.7282 -2.0967 -4.5611 39 1 -0.5069 0.4108 -5.7905 40 1 -1.2287 -1.2168 -5.7445 41 1 0.7030 0.2121 -9.1988 42 1 2.2029 -0.9265 -8.1427 43 1 1.7308 0.6014 -7.3552 44 1 3.6134 -0.3676 -6.1345 45 1 2.7550 -1.9197 -5.9825 46 1 2.8550 -1.7502 -3.3999 47 1 3.8450 -0.3025 -3.7185 48 1 1.1541 -2.6773 0.9556 49 1 2.3688 -3.2018 3.2181 50 1 3.6357 -0.9624 3.9939 51 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949075668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:16 Heat of formation + Delta-G solvation = -7.003443 kcal Electronic energy + Delta-G solvation = -32558.408005 eV Core-core repulsion = 28459.257533 eV Total energy + Delta-G solvation = -4099.150472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.54722 -41.68053 -40.07443 -38.08327 -36.07625 -35.27357 -34.77262 -32.94901 -31.63575 -30.43981 -30.13305 -29.63486 -28.48938 -26.30953 -25.01392 -24.77053 -23.98606 -22.77296 -21.51085 -21.24498 -20.58472 -20.02903 -19.48899 -18.51641 -18.43826 -17.12773 -16.98243 -16.79454 -16.33893 -16.15032 -15.95361 -15.54373 -15.41296 -15.29301 -15.24374 -15.06636 -14.69819 -14.53182 -14.31314 -13.79514 -13.70558 -13.50444 -13.34420 -13.31326 -13.22595 -13.10826 -12.99723 -12.87642 -12.70216 -12.64788 -12.53097 -12.13672 -12.00059 -11.95981 -11.88305 -11.55012 -11.29000 -10.96076 -10.95013 -10.47421 -9.69384 -9.55999 -9.03839 -8.94387 -8.27071 -5.40386 1.09378 1.32585 1.56608 1.63330 1.64092 1.82999 2.10281 2.16033 2.62975 2.69670 3.09186 3.19521 3.41770 3.56348 3.62970 3.67006 3.71226 3.77750 3.89039 4.07682 4.11745 4.20462 4.25413 4.32551 4.39561 4.46836 4.48287 4.52378 4.55477 4.57773 4.64364 4.71226 4.75148 4.76578 4.78641 4.82690 4.91525 4.98009 5.02058 5.10673 5.15002 5.17883 5.38627 5.42362 5.42839 5.80709 6.07542 6.09312 6.23902 6.28604 6.37901 6.46365 6.84264 7.04505 7.76665 8.21607 8.98273 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002613 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.343710 B =10711.180942 C =11170.392347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.157 0.843 4 C 0.502 3.498 5 O -0.565 6.565 6 N -0.604 5.604 7 C 0.069 3.931 8 C 0.033 3.967 9 O -0.379 6.379 10 C 0.129 3.871 11 C -0.136 4.136 12 C 0.155 3.845 13 N -0.616 5.616 14 C -0.359 4.359 15 H 0.046 0.954 16 C -0.073 4.073 17 N -0.938 5.938 18 Si 1.112 2.888 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.168 3.832 23 C -0.115 4.115 24 C 0.100 3.900 25 N -0.441 5.441 26 C -0.002 4.002 27 C -0.228 4.228 28 C -0.216 4.216 29 C -0.019 4.019 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.042 0.958 41 H 0.255 0.745 42 H 0.043 0.957 43 H 0.010 0.990 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.150 0.850 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 8.210 24.670 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 H 0.174 0.826 4 C 0.290 3.710 5 O -0.443 6.443 6 N -0.337 5.337 7 C -0.052 4.052 8 C -0.044 4.044 9 O -0.298 6.298 10 C 0.089 3.911 11 C -0.175 4.175 12 C 0.030 3.970 13 N -0.341 5.341 14 C -0.488 4.488 15 H 0.064 0.936 16 C -0.270 4.270 17 N -0.580 5.580 18 Si 0.936 3.064 19 H -0.216 1.216 20 H -0.208 1.208 21 H -0.202 1.202 22 C 0.042 3.958 23 C -0.154 4.154 24 C -0.024 4.024 25 N -0.118 5.118 26 C -0.132 4.132 27 C -0.253 4.253 28 C -0.240 4.240 29 C -0.147 4.147 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.165 0.835 49 H 0.155 0.845 50 H 0.167 0.833 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.390 7.310 22.689 24.078 hybrid contribution -0.484 -0.019 1.266 1.355 sum 2.906 7.291 23.955 25.208 Atomic orbital electron populations 1.22149 0.89548 1.03980 1.05666 1.21517 0.98096 0.97938 0.80911 0.82610 1.21234 0.77265 0.87374 0.85140 1.90743 1.52978 1.16423 1.84122 1.48178 1.62438 1.11444 1.11646 1.22856 1.02383 0.79268 1.00701 1.23254 0.94915 1.00925 0.85264 1.88046 1.78425 1.19891 1.43419 1.21429 0.93979 0.81708 0.94006 1.22302 0.96765 0.99967 0.98495 1.20819 0.93700 0.96633 0.85853 1.44312 1.12435 1.58264 1.19049 1.20179 1.24847 1.14092 0.89705 0.93584 1.27136 0.99547 1.03328 0.96943 1.70887 1.49023 1.00155 1.37903 0.82897 0.76911 0.72452 0.74091 1.21557 1.20800 1.20234 1.20533 0.84609 0.94973 0.95654 1.21849 0.98998 1.00491 0.94091 1.22169 0.97077 0.99241 0.83878 1.43964 1.40121 1.10365 1.17390 1.21775 1.06241 0.86631 0.98556 1.21155 1.05383 1.00230 0.98497 1.21178 1.06928 0.93691 1.02226 1.22364 1.00548 1.01095 0.90716 0.88168 0.88621 0.92722 0.88258 0.85234 0.85118 0.92681 0.90625 0.93117 0.96192 0.93933 0.93537 0.93839 0.97199 0.89998 0.91533 0.90194 0.89521 0.83540 0.84469 0.83262 0.78887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.07 71.99 0.65 -1.13 16 2 C 0.12 1.74 2.52 44.25 0.11 1.85 16 3 H 0.16 0.99 6.40 -2.39 -0.02 0.97 16 4 C 0.50 11.30 6.88 87.66 0.60 11.90 16 5 O -0.56 -18.20 14.62 -3.04 -0.04 -18.25 16 6 N -0.60 -12.25 2.52 -817.41 -2.06 -14.31 16 7 C 0.07 0.84 6.33 86.35 0.55 1.39 16 8 C 0.03 0.60 6.60 72.08 0.48 1.08 16 9 O -0.38 -11.05 9.01 -148.98 -1.34 -12.39 16 10 C 0.13 4.02 0.68 -10.72 -0.01 4.01 16 11 C -0.14 -4.64 4.33 30.65 0.13 -4.51 16 12 C 0.16 6.56 6.29 86.36 0.54 7.10 16 13 N -0.62 -31.46 2.86 -699.91 -2.00 -33.47 16 14 C -0.36 -20.49 9.49 84.04 0.80 -19.70 16 15 H 0.05 2.66 7.95 -2.91 -0.02 2.63 16 16 C -0.07 -4.20 4.67 84.86 0.40 -3.80 16 17 N -0.94 -57.66 12.40 21.65 0.27 -57.39 16 18 Si 1.11 51.66 29.99 68.60 2.06 53.71 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.17 8.04 4.45 86.22 0.38 8.42 16 23 C -0.11 -4.26 5.09 30.51 0.16 -4.11 16 24 C 0.10 2.63 5.30 86.34 0.46 3.08 16 25 N -0.44 -8.47 2.58 -505.90 -1.31 -9.77 16 26 C 0.00 -0.06 9.33 83.21 0.78 0.72 16 27 C -0.23 -5.21 10.86 22.14 0.24 -4.97 16 28 C -0.22 -4.18 10.86 22.14 0.24 -3.94 16 29 C -0.02 -0.32 11.39 83.21 0.95 0.63 16 30 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.10 0.82 7.72 -2.38 -0.02 0.80 16 32 H 0.05 0.88 7.80 -2.39 -0.02 0.87 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.13 0.54 5.26 -2.39 -0.01 0.53 16 35 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.06 6.29 -2.39 -0.02 1.04 16 37 H 0.08 2.19 6.16 -2.38 -0.01 2.18 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.02 0.84 7.83 -2.39 -0.02 0.83 16 40 H 0.04 1.83 7.93 -2.39 -0.02 1.81 16 41 H 0.25 16.00 6.77 -92.71 -0.63 15.38 16 42 H 0.04 2.36 6.29 -2.39 -0.02 2.35 16 43 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 44 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.08 2.47 7.06 -2.39 -0.02 2.45 16 47 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.15 3.74 7.77 -2.91 -0.02 3.72 16 49 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 50 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 51 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -78.56 389.37 4.08 -74.48 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.06 Total: 19.35 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 7.45 Total: -1.96 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.10 Total: -114.94 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.39 Total: -30.64 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.71 kcal Total: -78.56 4.08 -74.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949075668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.476 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds