Wall clock time and date at job start Wed Apr 1 2020 04:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46949 * 2 1 4 4 C 1.50701 * 109.47079 * 120.00499 * 2 1 3 5 5 O 1.21280 * 120.00087 * 14.30574 * 4 2 1 6 6 N 1.34775 * 119.99821 * 194.58146 * 4 2 1 7 7 C 1.46937 * 120.64189 * 4.50478 * 6 4 2 8 8 C 1.53622 * 108.53708 * 126.29842 * 7 6 4 9 9 C 1.52994 * 109.27639 * 54.80608 * 8 7 6 10 10 C 1.52983 * 109.63290 * 298.66007 * 9 8 7 11 11 C 1.46932 * 120.64397 * 184.78513 * 6 4 2 12 12 C 1.53257 * 109.35937 * 178.71711 * 9 8 7 13 13 N 1.47161 * 108.40796 * 187.91416 * 12 9 8 14 14 C 1.36933 * 120.98851 * 230.49855 * 13 12 9 15 15 H 1.07993 * 120.00351 * 152.29295 * 14 13 12 16 16 C 1.38820 * 119.99729 * 332.29411 * 14 13 12 17 17 N 1.31615 * 119.99983 * 342.78703 * 16 14 13 18 18 Si 1.86801 * 119.99716 * 162.79269 * 16 14 13 19 19 H 1.48491 * 109.47435 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47210 * 119.99980 * 18 16 14 21 21 H 1.48501 * 109.46835 * 239.99493 * 18 16 14 22 22 C 1.47156 * 118.02446 * 50.46838 * 13 12 9 23 23 C 1.53298 * 108.37778 * 309.41119 * 22 13 12 24 24 O 1.42899 * 109.54869 * 58.91634 * 9 8 7 25 25 N 1.46506 * 109.46736 * 240.00104 * 2 1 3 26 26 C 1.36340 * 125.63744 * 299.69345 * 25 2 1 27 27 C 1.34852 * 108.21951 * 179.82934 * 26 25 2 28 28 C 1.40894 * 107.41387 * 0.42573 * 27 26 25 29 29 C 1.34854 * 107.41911 * 359.73831 * 28 27 26 30 30 H 1.09004 * 109.47025 * 303.13532 * 1 2 3 31 31 H 1.09001 * 109.47367 * 63.13669 * 1 2 3 32 32 H 1.09005 * 109.47392 * 183.13818 * 1 2 3 33 33 H 1.09001 * 109.58484 * 246.13110 * 7 6 4 34 34 H 1.08996 * 109.58588 * 6.55154 * 7 6 4 35 35 H 1.09005 * 109.62420 * 294.80268 * 8 7 6 36 36 H 1.08998 * 109.42914 * 174.68710 * 8 7 6 37 37 H 1.09004 * 109.49433 * 301.24284 * 10 9 8 38 38 H 1.08997 * 109.51291 * 181.18778 * 10 9 8 39 39 H 1.08995 * 109.58260 * 353.43717 * 11 6 4 40 40 H 1.09005 * 109.58770 * 113.71969 * 11 6 4 41 41 H 1.09002 * 109.67648 * 307.63888 * 12 9 8 42 42 H 1.09002 * 109.67843 * 68.18779 * 12 9 8 43 43 H 0.97001 * 120.00010 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.67842 * 69.13086 * 22 13 12 45 45 H 1.08999 * 109.68032 * 189.68379 * 22 13 12 46 46 H 1.08995 * 109.51278 * 172.27588 * 23 22 13 47 47 H 1.09003 * 109.51062 * 292.42746 * 23 22 13 48 48 H 1.08005 * 125.88720 * 359.96323 * 26 25 2 49 49 H 1.08001 * 126.29220 * 180.15786 * 27 26 25 50 50 H 1.08000 * 126.29159 * 179.73345 * 28 27 26 51 51 H 1.07994 * 125.89189 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2749 -1.3908 1.8895 6 7 3.3219 -0.5855 1.6014 7 6 4.2261 0.3167 0.8751 8 6 4.8781 1.2725 1.8857 9 6 5.5563 0.4563 2.9878 10 6 4.5102 -0.3835 3.7232 11 6 3.8526 -1.3532 2.7363 12 6 6.2347 1.4073 3.9798 13 7 7.0366 0.6056 4.9178 14 6 6.9196 0.7779 6.2712 15 1 7.1284 -0.0437 6.9402 16 6 6.5323 2.0087 6.7833 17 7 6.6042 3.0864 6.0312 18 14 5.9095 2.1353 8.5398 19 1 5.9253 0.7903 9.1688 20 1 6.7860 3.0532 9.3109 21 1 4.5215 2.6633 8.5359 22 6 7.9676 -0.3872 4.3582 23 6 7.2029 -1.2522 3.3498 24 8 6.5398 -0.4039 2.4092 25 7 2.0183 -0.6906 -1.1963 26 6 1.7655 -1.9902 -1.5221 27 6 2.3797 -2.2586 -2.6922 28 6 3.0439 -1.0845 -3.0989 29 6 2.8054 -0.1416 -2.1647 30 1 -0.3633 0.5618 0.8606 31 1 -0.3634 0.4644 -0.9168 32 1 -0.3634 -1.0262 0.0563 33 1 4.9962 -0.2665 0.3701 34 1 3.6589 0.8896 0.1415 35 1 4.1158 1.9154 2.3259 36 1 5.6220 1.8856 1.3771 37 1 3.7510 0.2725 4.1491 38 1 4.9921 -0.9480 4.5214 39 1 3.0387 -1.8827 3.2316 40 1 4.5911 -2.0707 2.3787 41 1 6.8827 2.0986 3.4410 42 1 5.4771 1.9661 4.5293 43 1 6.3340 3.9465 6.3891 44 1 8.7895 0.1228 3.8556 45 1 8.3591 -1.0153 5.1584 46 1 7.9020 -1.9024 2.8239 47 1 6.4656 -1.8588 3.8758 48 1 1.1735 -2.6842 -0.9438 49 1 2.3685 -3.2017 -3.2184 50 1 3.6354 -0.9621 -3.9942 51 1 3.1746 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949340574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:12 Heat of formation + Delta-G solvation = 10.951702 kcal Electronic energy + Delta-G solvation = -32869.027631 eV Core-core repulsion = 28770.655752 eV Total energy + Delta-G solvation = -4098.371879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.63281 -40.20576 -38.97118 -36.28812 -34.45679 -34.35463 -32.40250 -31.31854 -31.00165 -29.48615 -28.83486 -28.38505 -26.72369 -25.00143 -23.58652 -23.35524 -22.65838 -21.25768 -20.62636 -20.35833 -19.19944 -18.64799 -17.90587 -17.08579 -16.91493 -16.08486 -15.56485 -15.14710 -14.92143 -14.66384 -14.45182 -14.34293 -14.01162 -13.88684 -13.68341 -13.59024 -13.57959 -13.06870 -12.85335 -12.76742 -12.63327 -12.42869 -12.30214 -12.15309 -12.01282 -11.91428 -11.76314 -11.59108 -11.09304 -11.04175 -10.93090 -10.76199 -10.64299 -10.28341 -10.26798 -10.09528 -9.92966 -9.47809 -9.07796 -8.71330 -8.59523 -8.53371 -8.24806 -6.75753 -5.89512 -3.33122 2.00406 2.18263 2.86409 2.98653 3.09489 3.29732 3.38610 3.40118 4.13931 4.26732 4.32783 4.40306 4.55581 4.83719 4.89326 5.01628 5.14136 5.23362 5.28047 5.32168 5.33955 5.37821 5.41381 5.50231 5.52042 5.55037 5.56940 5.72006 5.79490 5.80592 5.88195 5.92023 6.06651 6.11518 6.14939 6.19697 6.21580 6.31527 6.40213 6.46152 6.63532 6.71793 6.79356 6.89248 7.02073 7.10613 7.20815 7.32541 7.40410 7.68217 7.88623 7.97080 8.29412 9.06979 9.69909 10.27929 11.18424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.003115 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.189021 B = 8986.228722 C = 9630.288876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.115 3.885 3 H 0.118 0.882 4 C 0.506 3.494 5 O -0.535 6.535 6 N -0.592 5.592 7 C 0.114 3.886 8 C -0.117 4.117 9 C 0.096 3.904 10 C -0.145 4.145 11 C 0.116 3.884 12 C 0.160 3.840 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.110 3.890 23 C 0.046 3.954 24 O -0.381 6.381 25 N -0.437 5.437 26 C -0.005 4.005 27 C -0.201 4.201 28 C -0.197 4.197 29 C -0.016 4.016 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.157 0.843 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -5.613 -15.675 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.136 0.864 4 C 0.291 3.709 5 O -0.411 6.411 6 N -0.324 5.324 7 C -0.009 4.009 8 C -0.155 4.155 9 C 0.055 3.945 10 C -0.183 4.183 11 C -0.005 4.005 12 C 0.034 3.966 13 N -0.316 5.316 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.215 1.215 22 C -0.016 4.016 23 C -0.032 4.032 24 O -0.301 6.301 25 N -0.116 5.116 26 C -0.134 4.134 27 C -0.226 4.226 28 C -0.222 4.222 29 C -0.144 4.144 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.174 0.826 49 H 0.151 0.849 50 H 0.152 0.848 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.701 -5.632 -15.111 18.324 hybrid contribution -0.090 0.314 1.249 1.291 sum -8.791 -5.318 -13.862 17.254 Atomic orbital electron populations 1.21954 0.90924 1.04501 1.03117 1.21548 0.97399 0.97659 0.82468 0.86446 1.20493 0.82145 0.82145 0.86086 1.90702 1.54960 1.40656 1.54771 1.48144 1.09058 1.43122 1.32078 1.21872 0.93061 0.91894 0.94030 1.21937 0.99868 0.97280 0.96451 1.22125 0.87854 0.91189 0.93308 1.22316 0.98633 0.99116 0.98271 1.21662 0.98410 0.93977 0.86498 1.21318 0.94878 0.90799 0.89605 1.44042 1.42631 1.42447 1.02478 1.19190 1.42721 0.94605 0.81794 0.91486 1.25051 1.01629 0.95006 0.97729 1.70036 1.50146 0.97925 1.36409 0.86251 0.78448 0.77727 0.84543 1.20177 1.21632 1.21488 1.21593 0.92428 0.92333 0.95288 1.23020 0.95579 0.92570 0.92023 1.87774 1.53822 1.54166 1.34315 1.43982 1.40044 1.10365 1.17181 1.21795 1.06540 0.85751 0.99353 1.20873 1.04599 0.99360 0.97765 1.20872 1.06344 0.93804 1.01148 1.21848 1.01222 0.99934 0.91423 0.90205 0.91105 0.90649 0.90071 0.90956 0.90348 0.89848 0.91119 0.89064 0.89568 0.91256 0.95475 0.89277 0.93600 0.95723 0.92118 0.90239 0.93577 0.82581 0.84886 0.84754 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.67 37.16 0.32 -1.04 16 2 C 0.12 1.19 2.36 -69.08 -0.16 1.03 16 3 H 0.12 0.98 6.58 -51.93 -0.34 0.64 16 4 C 0.51 6.96 6.84 -10.99 -0.08 6.89 16 5 O -0.53 -8.93 15.34 5.56 0.09 -8.84 16 6 N -0.59 -8.23 2.97 -172.49 -0.51 -8.74 16 7 C 0.11 1.41 6.04 -3.48 -0.02 1.39 16 8 C -0.12 -1.69 5.12 -26.41 -0.14 -1.82 16 9 C 0.10 1.70 0.68 -90.50 -0.06 1.64 16 10 C -0.15 -2.50 4.33 -26.64 -0.12 -2.62 16 11 C 0.12 1.78 6.20 -3.71 -0.02 1.76 16 12 C 0.16 3.59 4.09 -3.55 -0.01 3.57 16 13 N -0.59 -14.13 2.55 -171.84 -0.44 -14.56 16 14 C -0.25 -6.67 9.63 -15.06 -0.15 -6.81 16 15 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 16 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 17 N -0.90 -25.20 11.27 55.49 0.63 -24.57 16 18 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.11 2.22 6.73 -3.53 -0.02 2.19 16 23 C 0.05 0.78 6.60 37.31 0.25 1.03 16 24 O -0.38 -6.77 9.00 -35.23 -0.32 -7.09 16 25 N -0.44 -4.65 2.52 -111.25 -0.28 -4.93 16 26 C -0.01 -0.06 10.57 -16.75 -0.18 -0.24 16 27 C -0.20 -2.22 10.86 -39.78 -0.43 -2.65 16 28 C -0.20 -2.05 10.86 -39.78 -0.43 -2.49 16 29 C -0.02 -0.15 10.53 -16.75 -0.18 -0.33 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 33 H 0.08 1.09 7.82 -51.93 -0.41 0.68 16 34 H 0.07 0.71 4.69 -51.93 -0.24 0.47 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 39 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 40 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 2.23 6.26 -51.93 -0.33 1.91 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.77 6.29 -51.93 -0.33 0.45 16 48 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 49 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 51 H 0.16 1.17 8.03 -52.49 -0.42 0.75 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -30.72 391.42 -9.65 -40.37 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.17 Total: 4.83 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.51 Total: 1.55 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.60 Total: -52.81 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.23 Total: -15.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.72 -9.65 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949340574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.322 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds