Wall clock time and date at job start Wed Apr 1 2020 04:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46949 * 2 1 4 4 C 1.50701 * 109.47079 * 120.00499 * 2 1 3 5 5 O 1.21280 * 120.00087 * 14.30574 * 4 2 1 6 6 N 1.34775 * 119.99821 * 194.58146 * 4 2 1 7 7 C 1.46937 * 120.64189 * 4.50478 * 6 4 2 8 8 C 1.53622 * 108.53708 * 126.29842 * 7 6 4 9 9 C 1.52994 * 109.27639 * 54.80608 * 8 7 6 10 10 C 1.52983 * 109.63290 * 298.66007 * 9 8 7 11 11 C 1.46932 * 120.64397 * 184.78513 * 6 4 2 12 12 C 1.53257 * 109.35937 * 178.71711 * 9 8 7 13 13 N 1.47161 * 108.40796 * 187.91416 * 12 9 8 14 14 C 1.36933 * 120.98851 * 230.49855 * 13 12 9 15 15 H 1.07993 * 120.00351 * 152.29295 * 14 13 12 16 16 C 1.38820 * 119.99729 * 332.29411 * 14 13 12 17 17 N 1.31615 * 119.99983 * 342.78703 * 16 14 13 18 18 Si 1.86801 * 119.99716 * 162.79269 * 16 14 13 19 19 H 1.48491 * 109.47435 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47210 * 119.99980 * 18 16 14 21 21 H 1.48501 * 109.46835 * 239.99493 * 18 16 14 22 22 C 1.47156 * 118.02446 * 50.46838 * 13 12 9 23 23 C 1.53298 * 108.37778 * 309.41119 * 22 13 12 24 24 O 1.42899 * 109.54869 * 58.91634 * 9 8 7 25 25 N 1.46506 * 109.46736 * 240.00104 * 2 1 3 26 26 C 1.36340 * 125.63744 * 299.69345 * 25 2 1 27 27 C 1.34852 * 108.21951 * 179.82934 * 26 25 2 28 28 C 1.40894 * 107.41387 * 0.42573 * 27 26 25 29 29 C 1.34854 * 107.41911 * 359.73831 * 28 27 26 30 30 H 1.09004 * 109.47025 * 303.13532 * 1 2 3 31 31 H 1.09001 * 109.47367 * 63.13669 * 1 2 3 32 32 H 1.09005 * 109.47392 * 183.13818 * 1 2 3 33 33 H 1.09001 * 109.58484 * 246.13110 * 7 6 4 34 34 H 1.08996 * 109.58588 * 6.55154 * 7 6 4 35 35 H 1.09005 * 109.62420 * 294.80268 * 8 7 6 36 36 H 1.08998 * 109.42914 * 174.68710 * 8 7 6 37 37 H 1.09004 * 109.49433 * 301.24284 * 10 9 8 38 38 H 1.08997 * 109.51291 * 181.18778 * 10 9 8 39 39 H 1.08995 * 109.58260 * 353.43717 * 11 6 4 40 40 H 1.09005 * 109.58770 * 113.71969 * 11 6 4 41 41 H 1.09002 * 109.67648 * 307.63888 * 12 9 8 42 42 H 1.09002 * 109.67843 * 68.18779 * 12 9 8 43 43 H 0.97001 * 120.00010 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.67842 * 69.13086 * 22 13 12 45 45 H 1.08999 * 109.68032 * 189.68379 * 22 13 12 46 46 H 1.08995 * 109.51278 * 172.27588 * 23 22 13 47 47 H 1.09003 * 109.51062 * 292.42746 * 23 22 13 48 48 H 1.08005 * 125.88720 * 359.96323 * 26 25 2 49 49 H 1.08001 * 126.29220 * 180.15786 * 27 26 25 50 50 H 1.08000 * 126.29159 * 179.73345 * 28 27 26 51 51 H 1.07994 * 125.89189 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2749 -1.3908 1.8895 6 7 3.3219 -0.5855 1.6014 7 6 4.2261 0.3167 0.8751 8 6 4.8781 1.2725 1.8857 9 6 5.5563 0.4563 2.9878 10 6 4.5102 -0.3835 3.7232 11 6 3.8526 -1.3532 2.7363 12 6 6.2347 1.4073 3.9798 13 7 7.0366 0.6056 4.9178 14 6 6.9196 0.7779 6.2712 15 1 7.1284 -0.0437 6.9402 16 6 6.5323 2.0087 6.7833 17 7 6.6042 3.0864 6.0312 18 14 5.9095 2.1353 8.5398 19 1 5.9253 0.7903 9.1688 20 1 6.7860 3.0532 9.3109 21 1 4.5215 2.6633 8.5359 22 6 7.9676 -0.3872 4.3582 23 6 7.2029 -1.2522 3.3498 24 8 6.5398 -0.4039 2.4092 25 7 2.0183 -0.6906 -1.1963 26 6 1.7655 -1.9902 -1.5221 27 6 2.3797 -2.2586 -2.6922 28 6 3.0439 -1.0845 -3.0989 29 6 2.8054 -0.1416 -2.1647 30 1 -0.3633 0.5618 0.8606 31 1 -0.3634 0.4644 -0.9168 32 1 -0.3634 -1.0262 0.0563 33 1 4.9962 -0.2665 0.3701 34 1 3.6589 0.8896 0.1415 35 1 4.1158 1.9154 2.3259 36 1 5.6220 1.8856 1.3771 37 1 3.7510 0.2725 4.1491 38 1 4.9921 -0.9480 4.5214 39 1 3.0387 -1.8827 3.2316 40 1 4.5911 -2.0707 2.3787 41 1 6.8827 2.0986 3.4410 42 1 5.4771 1.9661 4.5293 43 1 6.3340 3.9465 6.3891 44 1 8.7895 0.1228 3.8556 45 1 8.3591 -1.0153 5.1584 46 1 7.9020 -1.9024 2.8239 47 1 6.4656 -1.8588 3.8758 48 1 1.1735 -2.6842 -0.9438 49 1 2.3685 -3.2017 -3.2184 50 1 3.6354 -0.9621 -3.9942 51 1 3.1746 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949340574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:11 Heat of formation + Delta-G solvation = -5.709034 kcal Electronic energy + Delta-G solvation = -32869.750095 eV Core-core repulsion = 28770.655752 eV Total energy + Delta-G solvation = -4099.094342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.50066 -41.40786 -40.24754 -37.60196 -36.19129 -35.24506 -33.75446 -33.21022 -32.25096 -30.25687 -29.87625 -29.58510 -28.41814 -26.18173 -25.06102 -24.80335 -23.89419 -22.59198 -21.49971 -21.37613 -20.42822 -19.81684 -18.90848 -18.79437 -18.06594 -17.25537 -17.12188 -16.48709 -16.22024 -16.00518 -15.93211 -15.45638 -15.40707 -15.29873 -14.96088 -14.75439 -14.61320 -14.44611 -14.17065 -13.92376 -13.66108 -13.36691 -13.26121 -13.22013 -13.11183 -13.02577 -12.90741 -12.82530 -12.75304 -12.56735 -12.41050 -12.32468 -12.25476 -12.10349 -11.76672 -11.72267 -11.20422 -10.93496 -10.73559 -10.47153 -9.77001 -9.51992 -9.02224 -8.69374 -7.91882 -5.38383 1.05099 1.35460 1.41379 1.44793 1.53806 1.82314 2.19916 2.23208 2.44930 2.86968 3.18394 3.22793 3.48696 3.58241 3.69861 3.84309 3.90935 3.95956 4.05404 4.12989 4.24035 4.30406 4.40945 4.41410 4.44023 4.50970 4.60689 4.64354 4.65142 4.69207 4.76102 4.78231 4.83450 4.86014 4.91435 4.94902 5.05622 5.09422 5.11656 5.22357 5.29167 5.40750 5.44258 5.47291 5.54549 5.61078 6.12212 6.22644 6.29528 6.33123 6.41336 6.46449 6.89347 7.07143 7.75729 8.29969 9.13334 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.003115 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.189021 B = 8986.228722 C = 9630.288876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.121 3.879 3 H 0.147 0.853 4 C 0.503 3.497 5 O -0.569 6.569 6 N -0.595 5.595 7 C 0.124 3.876 8 C -0.115 4.115 9 C 0.106 3.894 10 C -0.134 4.134 11 C 0.127 3.873 12 C 0.170 3.830 13 N -0.610 5.610 14 C -0.260 4.260 15 H 0.067 0.933 16 C -0.045 4.045 17 N -0.931 5.931 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.105 3.895 23 C 0.053 3.947 24 O -0.379 6.379 25 N -0.439 5.439 26 C -0.027 4.027 27 C -0.210 4.210 28 C -0.213 4.213 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 41 H -0.002 1.002 42 H 0.057 0.943 43 H 0.250 0.750 44 H 0.016 0.984 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.050 0.950 48 H 0.151 0.849 49 H 0.140 0.860 50 H 0.149 0.851 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -5.808 -17.487 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.164 0.836 4 C 0.290 3.710 5 O -0.447 6.447 6 N -0.327 5.327 7 C 0.002 3.998 8 C -0.153 4.153 9 C 0.065 3.935 10 C -0.172 4.172 11 C 0.005 3.995 12 C 0.044 3.956 13 N -0.334 5.334 14 C -0.390 4.390 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.217 1.217 22 C -0.020 4.020 23 C -0.025 4.025 24 O -0.298 6.298 25 N -0.117 5.117 26 C -0.156 4.156 27 C -0.235 4.235 28 C -0.237 4.237 29 C -0.139 4.139 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.084 0.916 46 H 0.132 0.868 47 H 0.068 0.932 48 H 0.168 0.832 49 H 0.158 0.842 50 H 0.166 0.834 51 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.069 -5.853 -16.951 20.096 hybrid contribution 0.107 0.333 1.817 1.850 sum -8.962 -5.520 -15.134 18.435 Atomic orbital electron populations 1.21938 0.90243 1.03734 1.04192 1.21589 0.97919 0.98252 0.80678 0.83559 1.21143 0.81517 0.81586 0.86725 1.90689 1.55756 1.42122 1.56127 1.48222 1.09568 1.43186 1.31677 1.21893 0.93081 0.91275 0.93525 1.21943 1.00035 0.97399 0.95954 1.21932 0.87606 0.90520 0.93422 1.22138 0.97979 0.98888 0.98219 1.21411 0.97998 0.93472 0.86639 1.21130 0.93555 0.91250 0.89705 1.44303 1.43884 1.43090 1.02164 1.19469 1.41832 0.94501 0.83197 0.91547 1.25725 1.02402 0.94827 1.01118 1.70170 1.51495 0.98137 1.37885 0.85313 0.77422 0.77774 0.80609 1.19207 1.21924 1.21710 1.21769 0.92108 0.91940 0.96221 1.23037 0.95872 0.92013 0.91557 1.87788 1.53746 1.54018 1.34266 1.44018 1.40299 1.10123 1.17290 1.21853 1.07418 0.86438 0.99872 1.21128 1.04458 1.00161 0.97730 1.21161 1.06775 0.93713 1.02078 1.22361 0.99997 1.01018 0.90542 0.89972 0.89196 0.92305 0.90215 0.87497 0.90180 0.88990 0.92675 0.91003 0.90435 0.90803 0.98356 0.92422 0.94045 0.96641 0.91555 0.86758 0.93177 0.83194 0.84185 0.83358 0.79170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.67 71.98 0.62 -1.73 16 2 C 0.12 2.16 2.36 44.24 0.10 2.26 16 3 H 0.15 1.77 6.58 -2.39 -0.02 1.75 16 4 C 0.50 12.99 6.84 87.66 0.60 13.59 16 5 O -0.57 -18.68 15.34 -3.03 -0.05 -18.73 16 6 N -0.59 -15.40 2.97 -818.03 -2.43 -17.83 16 7 C 0.12 2.69 6.04 86.51 0.52 3.21 16 8 C -0.11 -3.12 5.12 30.80 0.16 -2.96 16 9 C 0.11 3.70 0.68 -10.72 -0.01 3.69 16 10 C -0.13 -4.61 4.33 30.65 0.13 -4.47 16 11 C 0.13 3.78 6.20 86.36 0.54 4.32 16 12 C 0.17 7.79 4.09 86.34 0.35 8.14 16 13 N -0.61 -29.61 2.55 -697.57 -1.78 -31.38 16 14 C -0.26 -13.89 9.63 84.04 0.81 -13.08 16 15 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 16 C -0.04 -2.44 4.92 84.86 0.42 -2.02 16 17 N -0.93 -53.57 11.27 21.65 0.24 -53.32 16 18 Si 0.96 44.13 29.59 68.60 2.03 46.16 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 C 0.11 4.21 6.73 86.35 0.58 4.79 16 23 C 0.05 1.70 6.60 72.08 0.48 2.18 16 24 O -0.38 -12.81 9.00 -148.98 -1.34 -14.15 16 25 N -0.44 -8.08 2.52 -505.90 -1.28 -9.36 16 26 C -0.03 -0.57 10.57 83.21 0.88 0.30 16 27 C -0.21 -4.26 10.86 22.14 0.24 -4.02 16 28 C -0.21 -3.83 10.86 22.14 0.24 -3.59 16 29 C -0.01 -0.17 10.53 83.21 0.88 0.70 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.17 7.70 -2.38 -0.02 1.16 16 33 H 0.08 1.84 7.82 -2.39 -0.02 1.83 16 34 H 0.11 1.60 4.69 -2.39 -0.01 1.59 16 35 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.07 2.74 6.16 -2.39 -0.01 2.73 16 39 H 0.08 2.46 7.00 -2.39 -0.02 2.44 16 40 H 0.07 2.14 7.83 -2.38 -0.02 2.12 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.06 3.00 6.26 -2.39 -0.01 2.99 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.07 2.53 7.96 -2.39 -0.02 2.52 16 46 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.05 1.60 6.29 -2.39 -0.02 1.59 16 48 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 49 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 50 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 51 H 0.19 1.77 8.03 -2.91 -0.02 1.75 16 Total: -1.00 -68.27 391.42 3.87 -64.40 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.91 Total: 22.91 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 7.54 Total: 11.30 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.23 Total: -111.89 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.39 Total: -32.88 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.27 3.87 -64.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949340574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.691 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds