Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47369 * 2 1 4 4 C 1.50704 * 109.46975 * 239.99584 * 2 1 3 5 5 O 1.21279 * 119.99828 * 248.04138 * 4 2 1 6 6 N 1.34771 * 119.99550 * 68.04625 * 4 2 1 7 7 C 1.46930 * 120.64646 * 354.89679 * 6 4 2 8 8 C 1.53196 * 108.76871 * 126.59619 * 7 6 4 9 9 C 1.52995 * 109.34416 * 54.58775 * 8 7 6 10 10 C 1.52985 * 109.63491 * 298.77894 * 9 8 7 11 11 C 1.46940 * 120.64055 * 175.18172 * 6 4 2 12 12 C 1.53258 * 109.35989 * 178.83893 * 9 8 7 13 13 N 1.47153 * 108.40942 * 187.91062 * 12 9 8 14 14 C 1.36934 * 120.99317 * 230.49683 * 13 12 9 15 15 H 1.07995 * 120.00689 * 152.65480 * 14 13 12 16 16 C 1.38813 * 119.99377 * 332.65030 * 14 13 12 17 17 N 1.31619 * 120.00517 * 340.61959 * 16 14 13 18 18 Si 1.86807 * 119.99606 * 160.61547 * 16 14 13 19 19 H 1.48507 * 109.47014 * 60.00331 * 18 16 14 20 20 H 1.48502 * 109.46935 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47316 * 300.00278 * 18 16 14 22 22 C 1.47161 * 118.02526 * 50.47727 * 13 12 9 23 23 C 1.53300 * 108.37174 * 309.40808 * 22 13 12 24 24 O 1.42899 * 109.55199 * 59.04020 * 9 8 7 25 25 N 1.46496 * 109.46842 * 119.99810 * 2 1 3 26 26 C 1.36346 * 125.63695 * 59.69500 * 25 2 1 27 27 C 1.34855 * 108.21615 * 179.82656 * 26 25 2 28 28 C 1.40887 * 107.41693 * 0.42479 * 27 26 25 29 29 C 1.34847 * 107.41993 * 359.73492 * 28 27 26 30 30 H 1.08999 * 109.47035 * 172.75876 * 1 2 3 31 31 H 1.09001 * 109.47100 * 292.75983 * 1 2 3 32 32 H 1.09000 * 109.46832 * 52.75756 * 1 2 3 33 33 H 1.08995 * 109.58774 * 246.37993 * 7 6 4 34 34 H 1.08997 * 109.58433 * 6.81443 * 7 6 4 35 35 H 1.09002 * 109.48978 * 294.62563 * 8 7 6 36 36 H 1.09000 * 109.51176 * 174.56224 * 8 7 6 37 37 H 1.09002 * 109.49469 * 301.25012 * 10 9 8 38 38 H 1.09005 * 109.51242 * 181.18234 * 10 9 8 39 39 H 1.09002 * 109.58201 * 353.18523 * 11 6 4 40 40 H 1.08997 * 109.58912 * 113.46405 * 11 6 4 41 41 H 1.09000 * 109.67859 * 307.64484 * 12 9 8 42 42 H 1.09001 * 109.67705 * 68.15279 * 12 9 8 43 43 H 0.96998 * 120.00022 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.68288 * 69.12221 * 22 13 12 45 45 H 1.08993 * 109.68821 * 189.68310 * 22 13 12 46 46 H 1.08995 * 109.51380 * 172.27879 * 23 22 13 47 47 H 1.09006 * 109.51034 * 292.42785 * 23 22 13 48 48 H 1.07991 * 125.88880 * 359.95699 * 26 25 2 49 49 H 1.07998 * 126.28978 * 180.15557 * 27 26 25 50 50 H 1.08006 * 126.28835 * 179.73467 * 28 27 26 51 51 H 1.08005 * 125.89287 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6047 -1.7745 -1.1250 6 7 1.8455 -0.1634 -2.4479 7 6 1.0580 1.0673 -2.6031 8 6 1.8952 2.0945 -3.3716 9 6 2.3668 1.4791 -4.6906 10 6 3.2424 0.2578 -4.4039 11 6 2.4202 -0.7896 -3.6465 12 6 3.1801 2.5161 -5.4730 13 7 3.4601 1.9732 -6.8117 14 6 4.7319 1.9691 -7.3191 15 1 5.0216 1.2234 -8.0446 16 6 5.6489 2.9237 -6.9011 17 7 5.2297 4.0359 -6.3357 18 14 7.4781 2.6297 -7.1408 19 1 7.7673 2.4640 -8.5880 20 1 8.2393 3.7905 -6.6131 21 1 7.8817 1.4008 -6.4115 22 6 2.3326 1.4344 -7.5890 23 6 1.5628 0.4479 -6.7034 24 8 1.2336 1.0839 -5.4662 25 7 2.0183 -0.6906 1.1962 26 6 1.7558 -1.9867 1.5279 27 6 2.3799 -2.2586 2.6921 28 6 3.0441 -1.0845 3.0987 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 -1.0195 -0.1295 31 1 -0.3633 0.3976 0.9477 32 1 -0.3633 0.6219 -0.8181 33 1 0.1459 0.8499 -3.1588 34 1 0.8038 1.4647 -1.6205 35 1 2.7606 2.3794 -2.7732 36 1 1.2893 2.9768 -3.5780 37 1 4.0972 0.5573 -3.7974 38 1 3.5944 -0.1666 -5.3442 39 1 3.0650 -1.6178 -3.3525 40 1 1.6185 -1.1598 -4.2855 41 1 2.6076 3.4392 -5.5635 42 1 4.1176 2.7150 -4.9537 43 1 5.8705 4.7027 -6.0432 44 1 1.6732 2.2479 -7.8915 45 1 2.7089 0.9184 -8.4723 46 1 0.6478 0.1414 -7.2101 47 1 2.1829 -0.4273 -6.5091 48 1 1.1540 -2.6772 0.9559 49 1 2.3687 -3.2016 3.2183 50 1 3.6356 -0.9622 3.9940 51 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949340575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = 16.222382 kcal Electronic energy + Delta-G solvation = -32568.534922 eV Core-core repulsion = 28470.391597 eV Total energy + Delta-G solvation = -4098.143325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.53113 -40.28136 -38.92636 -36.27557 -34.62550 -34.40468 -32.41879 -31.34721 -31.09000 -29.39276 -28.72014 -28.38391 -26.73502 -25.02015 -23.51359 -23.48147 -22.80797 -21.24699 -20.54299 -20.24574 -19.38059 -18.67439 -17.46888 -17.27636 -16.92001 -15.86380 -15.60564 -15.54366 -14.88812 -14.65102 -14.45417 -14.35282 -14.00949 -13.85598 -13.73731 -13.63862 -13.55148 -13.28188 -12.87973 -12.84505 -12.53715 -12.39352 -12.25786 -12.08570 -12.08060 -11.90469 -11.81612 -11.61331 -11.11448 -11.06509 -10.92613 -10.75211 -10.67515 -10.34763 -10.29149 -10.03453 -9.89556 -9.49012 -9.11744 -8.64036 -8.60572 -8.54000 -8.09810 -6.78314 -5.91188 -3.33422 2.16166 2.42818 2.63940 3.08938 3.10673 3.31055 3.37626 3.39037 4.07850 4.22359 4.39286 4.41679 4.48235 4.75266 4.88305 4.99120 5.12224 5.17769 5.23321 5.25505 5.27554 5.32451 5.37724 5.43096 5.51430 5.56619 5.64519 5.65483 5.68274 5.77505 5.84762 5.89346 6.03756 6.08027 6.11470 6.28641 6.29693 6.32293 6.37146 6.43443 6.60952 6.69290 6.76926 6.98303 7.01425 7.23614 7.23919 7.36103 7.38094 7.67046 7.84461 7.99107 8.27644 9.05258 9.68761 10.26549 11.16859 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003020 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.546521 B = 9270.415709 C =10216.820007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 H 0.121 0.879 4 C 0.503 3.497 5 O -0.527 6.527 6 N -0.598 5.598 7 C 0.104 3.896 8 C -0.118 4.118 9 C 0.096 3.904 10 C -0.146 4.146 11 C 0.118 3.882 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.257 4.257 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.110 3.890 23 C 0.046 3.954 24 O -0.382 6.382 25 N -0.433 5.433 26 C 0.021 3.979 27 C -0.213 4.213 28 C -0.198 4.198 29 C -0.021 4.021 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.087 0.913 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.154 0.846 49 H 0.132 0.868 50 H 0.133 0.867 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -6.088 12.698 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 H 0.139 0.861 4 C 0.288 3.712 5 O -0.403 6.403 6 N -0.332 5.332 7 C -0.019 4.019 8 C -0.157 4.157 9 C 0.055 3.945 10 C -0.184 4.184 11 C -0.003 4.003 12 C 0.034 3.966 13 N -0.315 5.315 14 C -0.387 4.387 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.543 5.543 18 Si 0.729 3.271 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.301 6.301 25 N -0.109 5.109 26 C -0.109 4.109 27 C -0.237 4.237 28 C -0.223 4.223 29 C -0.150 4.150 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.171 0.829 49 H 0.150 0.850 50 H 0.151 0.849 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.421 -6.298 12.535 18.089 hybrid contribution 1.375 0.080 -0.435 1.445 sum -10.045 -6.218 12.100 16.911 Atomic orbital electron populations 1.22325 0.91232 1.04339 1.04457 1.21259 0.96886 0.97444 0.83548 0.86096 1.20514 0.80114 0.86048 0.84480 1.90748 1.42228 1.21535 1.85753 1.48079 1.52257 1.26564 1.06282 1.21997 0.94941 0.84295 1.00636 1.21867 1.00599 0.98060 0.95130 1.22119 0.86738 0.94996 0.90606 1.22329 0.98366 0.96347 1.01378 1.21639 0.97625 0.96183 0.84874 1.21296 0.98341 0.91478 0.85483 1.44026 1.03152 1.71721 1.12608 1.19093 0.86317 1.09181 1.24068 0.91556 1.25021 0.98701 0.94450 1.01096 1.70041 1.33222 1.06463 1.44588 0.86416 0.85293 0.77282 0.78104 1.20771 1.21543 1.20915 1.21593 0.90658 0.95303 0.94112 1.23023 0.99111 0.95491 0.85565 1.87755 1.31379 1.79018 1.31979 1.43735 1.39811 1.10664 1.16716 1.21641 1.05457 0.85625 0.98171 1.20824 1.05245 0.99225 0.98431 1.20828 1.06450 0.93855 1.01141 1.21784 1.01686 0.99923 0.91559 0.91138 0.90370 0.89209 0.89955 0.89998 0.90338 0.89772 0.91173 0.89015 0.89650 0.91241 0.95442 0.89500 0.93477 0.95735 0.92105 0.90232 0.93534 0.82863 0.85023 0.84934 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.73 37.16 0.32 -0.94 16 2 C 0.12 1.19 2.52 -69.08 -0.17 1.02 16 3 H 0.12 1.03 7.43 -51.93 -0.39 0.64 16 4 C 0.50 6.85 7.02 -10.99 -0.08 6.77 16 5 O -0.53 -9.19 14.75 5.56 0.08 -9.11 16 6 N -0.60 -7.76 2.97 -172.75 -0.51 -8.27 16 7 C 0.10 1.12 5.06 -3.71 -0.02 1.10 16 8 C -0.12 -1.59 5.10 -26.63 -0.14 -1.73 16 9 C 0.10 1.64 0.68 -90.50 -0.06 1.58 16 10 C -0.15 -2.46 4.33 -26.64 -0.12 -2.57 16 11 C 0.12 1.74 6.18 -3.70 -0.02 1.72 16 12 C 0.16 3.52 4.10 -3.55 -0.01 3.51 16 13 N -0.59 -13.91 2.54 -171.84 -0.44 -14.35 16 14 C -0.26 -6.72 9.62 -15.06 -0.14 -6.87 16 15 H 0.07 1.71 7.90 -52.49 -0.41 1.29 16 16 C 0.01 0.18 4.87 -17.43 -0.08 0.09 16 17 N -0.90 -25.06 11.39 55.49 0.63 -24.43 16 18 Si 0.90 21.08 29.60 -169.99 -5.03 16.05 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.11 2.17 6.74 -3.53 -0.02 2.15 16 23 C 0.05 0.75 6.60 37.31 0.25 1.00 16 24 O -0.38 -6.44 9.00 -35.23 -0.32 -6.75 16 25 N -0.43 -5.24 2.45 -111.26 -0.27 -5.52 16 26 C 0.02 0.27 9.55 -16.75 -0.16 0.11 16 27 C -0.21 -2.66 10.86 -39.78 -0.43 -3.09 16 28 C -0.20 -2.38 10.86 -39.78 -0.43 -2.81 16 29 C -0.02 -0.25 11.39 -16.75 -0.19 -0.44 16 30 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.55 5.45 -51.93 -0.28 0.27 16 33 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 34 H 0.08 0.63 4.36 -51.93 -0.23 0.41 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.71 6.16 -51.93 -0.32 1.39 16 39 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 40 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 2.14 6.31 -51.93 -0.33 1.82 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.75 6.29 -51.93 -0.33 0.43 16 48 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 49 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 51 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -31.79 388.41 -9.60 -41.39 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.08 Total: 4.55 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.52 Total: 0.59 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.59 Total: -52.57 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.24 Total: -15.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.79 -9.60 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949340575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.614 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds