Wall clock time and date at job start Wed Apr 1 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47369 * 2 1 4 4 C 1.50704 * 109.46975 * 239.99584 * 2 1 3 5 5 O 1.21279 * 119.99828 * 248.04138 * 4 2 1 6 6 N 1.34771 * 119.99550 * 68.04625 * 4 2 1 7 7 C 1.46930 * 120.64646 * 354.89679 * 6 4 2 8 8 C 1.53196 * 108.76871 * 126.59619 * 7 6 4 9 9 C 1.52995 * 109.34416 * 54.58775 * 8 7 6 10 10 C 1.52985 * 109.63491 * 298.77894 * 9 8 7 11 11 C 1.46940 * 120.64055 * 175.18172 * 6 4 2 12 12 C 1.53258 * 109.35989 * 178.83893 * 9 8 7 13 13 N 1.47153 * 108.40942 * 187.91062 * 12 9 8 14 14 C 1.36934 * 120.99317 * 230.49683 * 13 12 9 15 15 H 1.07995 * 120.00689 * 152.65480 * 14 13 12 16 16 C 1.38813 * 119.99377 * 332.65030 * 14 13 12 17 17 N 1.31619 * 120.00517 * 340.61959 * 16 14 13 18 18 Si 1.86807 * 119.99606 * 160.61547 * 16 14 13 19 19 H 1.48507 * 109.47014 * 60.00331 * 18 16 14 20 20 H 1.48502 * 109.46935 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47316 * 300.00278 * 18 16 14 22 22 C 1.47161 * 118.02526 * 50.47727 * 13 12 9 23 23 C 1.53300 * 108.37174 * 309.40808 * 22 13 12 24 24 O 1.42899 * 109.55199 * 59.04020 * 9 8 7 25 25 N 1.46496 * 109.46842 * 119.99810 * 2 1 3 26 26 C 1.36346 * 125.63695 * 59.69500 * 25 2 1 27 27 C 1.34855 * 108.21615 * 179.82656 * 26 25 2 28 28 C 1.40887 * 107.41693 * 0.42479 * 27 26 25 29 29 C 1.34847 * 107.41993 * 359.73492 * 28 27 26 30 30 H 1.08999 * 109.47035 * 172.75876 * 1 2 3 31 31 H 1.09001 * 109.47100 * 292.75983 * 1 2 3 32 32 H 1.09000 * 109.46832 * 52.75756 * 1 2 3 33 33 H 1.08995 * 109.58774 * 246.37993 * 7 6 4 34 34 H 1.08997 * 109.58433 * 6.81443 * 7 6 4 35 35 H 1.09002 * 109.48978 * 294.62563 * 8 7 6 36 36 H 1.09000 * 109.51176 * 174.56224 * 8 7 6 37 37 H 1.09002 * 109.49469 * 301.25012 * 10 9 8 38 38 H 1.09005 * 109.51242 * 181.18234 * 10 9 8 39 39 H 1.09002 * 109.58201 * 353.18523 * 11 6 4 40 40 H 1.08997 * 109.58912 * 113.46405 * 11 6 4 41 41 H 1.09000 * 109.67859 * 307.64484 * 12 9 8 42 42 H 1.09001 * 109.67705 * 68.15279 * 12 9 8 43 43 H 0.96998 * 120.00022 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.68288 * 69.12221 * 22 13 12 45 45 H 1.08993 * 109.68821 * 189.68310 * 22 13 12 46 46 H 1.08995 * 109.51380 * 172.27879 * 23 22 13 47 47 H 1.09006 * 109.51034 * 292.42785 * 23 22 13 48 48 H 1.07991 * 125.88880 * 359.95699 * 26 25 2 49 49 H 1.07998 * 126.28978 * 180.15557 * 27 26 25 50 50 H 1.08006 * 126.28835 * 179.73467 * 28 27 26 51 51 H 1.08005 * 125.89287 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6047 -1.7745 -1.1250 6 7 1.8455 -0.1634 -2.4479 7 6 1.0580 1.0673 -2.6031 8 6 1.8952 2.0945 -3.3716 9 6 2.3668 1.4791 -4.6906 10 6 3.2424 0.2578 -4.4039 11 6 2.4202 -0.7896 -3.6465 12 6 3.1801 2.5161 -5.4730 13 7 3.4601 1.9732 -6.8117 14 6 4.7319 1.9691 -7.3191 15 1 5.0216 1.2234 -8.0446 16 6 5.6489 2.9237 -6.9011 17 7 5.2297 4.0359 -6.3357 18 14 7.4781 2.6297 -7.1408 19 1 7.7673 2.4640 -8.5880 20 1 8.2393 3.7905 -6.6131 21 1 7.8817 1.4008 -6.4115 22 6 2.3326 1.4344 -7.5890 23 6 1.5628 0.4479 -6.7034 24 8 1.2336 1.0839 -5.4662 25 7 2.0183 -0.6906 1.1962 26 6 1.7558 -1.9867 1.5279 27 6 2.3799 -2.2586 2.6921 28 6 3.0441 -1.0845 3.0987 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 -1.0195 -0.1295 31 1 -0.3633 0.3976 0.9477 32 1 -0.3633 0.6219 -0.8181 33 1 0.1459 0.8499 -3.1588 34 1 0.8038 1.4647 -1.6205 35 1 2.7606 2.3794 -2.7732 36 1 1.2893 2.9768 -3.5780 37 1 4.0972 0.5573 -3.7974 38 1 3.5944 -0.1666 -5.3442 39 1 3.0650 -1.6178 -3.3525 40 1 1.6185 -1.1598 -4.2855 41 1 2.6076 3.4392 -5.5635 42 1 4.1176 2.7150 -4.9537 43 1 5.8705 4.7027 -6.0432 44 1 1.6732 2.2479 -7.8915 45 1 2.7089 0.9184 -8.4723 46 1 0.6478 0.1414 -7.2101 47 1 2.1829 -0.4273 -6.5091 48 1 1.1540 -2.6772 0.9559 49 1 2.3687 -3.2016 3.2183 50 1 3.6356 -0.9622 3.9940 51 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949340575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:15 Heat of formation + Delta-G solvation = -1.861077 kcal Electronic energy + Delta-G solvation = -32569.319079 eV Core-core repulsion = 28470.391597 eV Total energy + Delta-G solvation = -4098.927482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.45182 -41.45714 -40.18795 -37.53969 -36.19400 -35.43607 -33.70962 -33.21164 -32.26316 -30.25270 -29.83597 -29.54897 -28.38102 -26.14110 -25.04982 -24.69605 -24.07493 -22.55587 -21.50029 -21.34122 -20.48489 -19.93902 -18.84085 -18.35036 -18.30452 -17.22605 -16.90056 -16.64054 -16.28266 -16.06550 -15.89001 -15.50553 -15.35367 -15.22777 -14.99220 -14.71583 -14.60688 -14.46988 -14.35221 -13.86632 -13.47999 -13.44980 -13.35324 -13.25148 -13.18176 -12.95150 -12.81959 -12.77806 -12.74491 -12.59562 -12.43890 -12.29125 -12.22533 -12.15374 -11.74445 -11.67147 -11.11954 -10.85405 -10.72052 -10.45568 -9.74951 -9.51566 -8.99656 -8.69851 -7.92824 -5.37506 1.22589 1.41610 1.42248 1.44904 1.50505 1.76416 2.15919 2.19831 2.44722 2.88088 3.17905 3.21712 3.51317 3.68598 3.77638 3.79974 3.89738 3.96613 4.06613 4.13308 4.26125 4.31257 4.40204 4.43101 4.44357 4.53951 4.56231 4.61681 4.67393 4.71947 4.75651 4.79090 4.80969 4.87965 4.94147 4.97261 5.07062 5.10733 5.12458 5.24378 5.31673 5.41686 5.44151 5.44790 5.54683 5.60951 6.12712 6.23984 6.28920 6.34588 6.41847 6.50409 6.95562 7.06834 7.76271 8.29942 9.12072 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003020 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.546521 B = 9270.415709 C =10216.820007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.147 0.853 4 C 0.501 3.499 5 O -0.571 6.571 6 N -0.597 5.597 7 C 0.109 3.891 8 C -0.117 4.117 9 C 0.107 3.893 10 C -0.135 4.135 11 C 0.130 3.870 12 C 0.169 3.831 13 N -0.610 5.610 14 C -0.263 4.263 15 H 0.066 0.934 16 C -0.043 4.043 17 N -0.929 5.929 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.282 1.282 22 C 0.104 3.896 23 C 0.053 3.947 24 O -0.375 6.375 25 N -0.438 5.438 26 C 0.003 3.997 27 C -0.229 4.229 28 C -0.216 4.216 29 C -0.026 4.026 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.000 1.000 42 H 0.053 0.947 43 H 0.251 0.749 44 H 0.016 0.984 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.050 0.950 48 H 0.153 0.847 49 H 0.141 0.859 50 H 0.147 0.853 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 -6.220 13.688 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.164 0.836 4 C 0.288 3.712 5 O -0.450 6.450 6 N -0.329 5.329 7 C -0.012 4.012 8 C -0.156 4.156 9 C 0.066 3.934 10 C -0.174 4.174 11 C 0.007 3.993 12 C 0.043 3.957 13 N -0.334 5.334 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.239 4.239 17 N -0.575 5.575 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.022 4.022 23 C -0.024 4.024 24 O -0.295 6.295 25 N -0.114 5.114 26 C -0.127 4.127 27 C -0.253 4.253 28 C -0.241 4.241 29 C -0.154 4.154 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.018 0.982 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.083 0.917 46 H 0.135 0.865 47 H 0.068 0.932 48 H 0.171 0.829 49 H 0.158 0.842 50 H 0.165 0.835 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.221 -6.432 13.512 19.968 hybrid contribution 1.931 0.116 -0.831 2.105 sum -11.290 -6.316 12.681 18.115 Atomic orbital electron populations 1.22337 0.88822 1.04452 1.06056 1.21487 0.98632 0.97681 0.81162 0.83554 1.21146 0.79135 0.85581 0.85325 1.90733 1.44209 1.23658 1.86395 1.48123 1.52079 1.27067 1.05650 1.22173 0.94019 0.82395 1.02596 1.21890 1.01284 0.99145 0.93270 1.21916 0.86386 0.93544 0.91551 1.22153 0.98064 0.96815 1.00335 1.21378 0.97402 0.94929 0.85571 1.21130 0.97084 0.92115 0.85412 1.44293 1.03501 1.71844 1.13766 1.19388 0.87778 1.08618 1.23517 0.91635 1.25677 1.02116 0.94430 1.01696 1.70172 1.33951 1.07221 1.46131 0.85496 0.81059 0.76753 0.78111 1.20105 1.21937 1.20786 1.21786 0.89739 0.95740 0.94897 1.23033 1.00357 0.94197 0.84846 1.87772 1.30806 1.78870 1.32011 1.43914 1.39820 1.10524 1.17164 1.21768 1.06078 0.86361 0.98498 1.21123 1.05428 1.00028 0.98725 1.21146 1.06929 0.93880 1.02117 1.22283 1.00981 1.00999 0.91162 0.91988 0.88993 0.87113 0.88762 0.85984 0.90526 0.88707 0.93134 0.91146 0.91079 0.90190 0.98223 0.92852 0.94032 0.96588 0.91693 0.86522 0.93217 0.82906 0.84166 0.83526 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.73 71.98 0.63 -1.18 16 2 C 0.12 2.04 2.52 44.25 0.11 2.15 16 3 H 0.15 1.83 7.43 -2.39 -0.02 1.81 16 4 C 0.50 12.66 7.02 87.66 0.62 13.28 16 5 O -0.57 -19.63 14.75 -3.03 -0.04 -19.67 16 6 N -0.60 -14.09 2.97 -818.86 -2.43 -16.52 16 7 C 0.11 1.94 5.06 86.36 0.44 2.38 16 8 C -0.12 -2.92 5.10 30.66 0.16 -2.76 16 9 C 0.11 3.56 0.68 -10.71 -0.01 3.55 16 10 C -0.14 -4.54 4.33 30.65 0.13 -4.41 16 11 C 0.13 3.67 6.18 86.36 0.53 4.20 16 12 C 0.17 7.59 4.10 86.34 0.35 7.95 16 13 N -0.61 -29.21 2.54 -697.59 -1.77 -30.99 16 14 C -0.26 -14.01 9.62 84.03 0.81 -13.20 16 15 H 0.07 3.42 7.90 -2.91 -0.02 3.40 16 16 C -0.04 -2.34 4.87 84.86 0.41 -1.93 16 17 N -0.93 -53.41 11.39 21.65 0.25 -53.16 16 18 Si 0.96 44.20 29.60 68.60 2.03 46.23 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C 0.10 4.06 6.74 86.35 0.58 4.64 16 23 C 0.05 1.63 6.60 72.08 0.48 2.11 16 24 O -0.38 -11.83 9.00 -148.98 -1.34 -13.17 16 25 N -0.44 -9.74 2.45 -505.91 -1.24 -10.98 16 26 C 0.00 0.07 9.55 83.21 0.79 0.87 16 27 C -0.23 -5.58 10.86 22.14 0.24 -5.34 16 28 C -0.22 -4.91 10.86 22.14 0.24 -4.67 16 29 C -0.03 -0.54 11.39 83.21 0.95 0.40 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.78 5.45 -2.39 -0.01 0.77 16 33 H 0.09 1.57 7.82 -2.39 -0.02 1.55 16 34 H 0.12 1.24 4.36 -2.39 -0.01 1.23 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.66 6.16 -2.38 -0.01 2.64 16 39 H 0.07 2.24 7.04 -2.39 -0.02 2.23 16 40 H 0.08 2.11 7.83 -2.39 -0.02 2.10 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.05 2.75 6.31 -2.39 -0.02 2.73 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 46 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 47 H 0.05 1.52 6.29 -2.38 -0.01 1.51 16 48 H 0.15 3.65 8.06 -2.92 -0.02 3.63 16 49 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 50 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 51 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -72.01 388.41 3.82 -68.19 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.92 Total: 22.04 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.46 Total: 8.04 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -5.20 Total: -111.66 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.39 Total: -32.84 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.01 3.82 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949340575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.326 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds