Wall clock time and date at job start Wed Apr 1 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47496 * 2 1 4 4 C 1.35531 * 125.68048 * 256.51408 * 3 2 1 5 5 C 1.35449 * 108.87370 * 180.02562 * 4 3 2 6 6 C 1.39833 * 107.86346 * 359.74018 * 5 4 3 7 7 C 1.37654 * 125.67684 * 76.53582 * 3 2 1 8 8 C 1.46681 * 126.23311 * 359.97438 * 7 3 2 9 9 O 1.21693 * 119.99855 * 27.55303 * 8 7 3 10 10 N 1.34771 * 119.99818 * 207.54844 * 8 7 3 11 11 C 1.46925 * 120.63617 * 188.82787 * 10 8 7 12 12 C 1.53192 * 108.89933 * 233.73513 * 11 10 8 13 13 C 1.52984 * 109.34722 * 305.36600 * 12 11 10 14 14 C 1.52999 * 109.63322 * 61.21133 * 13 12 11 15 15 C 1.47203 * 120.82533 * 8.98012 * 10 8 7 16 16 C 1.53252 * 109.39985 * 181.12698 * 13 12 11 17 17 N 1.47154 * 108.40798 * 67.83039 * 16 13 12 18 18 C 1.36943 * 120.98862 * 230.45282 * 17 16 13 19 19 H 1.07999 * 119.99788 * 150.45564 * 18 17 16 20 20 C 1.38811 * 119.99790 * 330.46198 * 18 17 16 21 21 N 1.31627 * 119.99949 * 344.99474 * 20 18 17 22 22 Si 1.86799 * 120.00130 * 164.99873 * 20 18 17 23 23 H 1.48505 * 109.46946 * 59.99468 * 22 20 18 24 24 H 1.48494 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47313 * 299.99738 * 22 20 18 26 26 C 1.47155 * 118.02966 * 50.47041 * 17 16 13 27 27 C 1.53302 * 108.36926 * 309.41353 * 26 17 16 28 28 O 1.42897 * 109.56372 * 300.96220 * 13 12 11 29 29 H 1.09000 * 109.46851 * 64.83174 * 1 2 3 30 30 H 1.08997 * 109.47456 * 184.83127 * 1 2 3 31 31 H 1.08996 * 109.47010 * 304.83716 * 1 2 3 32 32 H 1.09003 * 109.47173 * 240.00068 * 2 1 3 33 33 H 1.08999 * 109.47242 * 120.00576 * 2 1 3 34 34 H 1.08005 * 125.56180 * 0.05637 * 4 3 2 35 35 H 1.08005 * 126.06939 * 180.02562 * 5 4 3 36 36 H 1.08001 * 126.45806 * 180.29957 * 6 5 4 37 37 H 1.09000 * 109.58307 * 113.87428 * 11 10 8 38 38 H 1.09004 * 109.58551 * 353.59395 * 11 10 8 39 39 H 1.09001 * 109.49414 * 65.32944 * 12 11 10 40 40 H 1.09003 * 109.49635 * 185.38058 * 12 11 10 41 41 H 1.08999 * 109.49234 * 58.74064 * 14 13 12 42 42 H 1.08992 * 109.49434 * 178.82070 * 14 13 12 43 43 H 1.08999 * 109.53081 * 6.47060 * 15 10 8 44 44 H 1.08994 * 109.67615 * 246.16828 * 15 10 8 45 45 H 1.08999 * 109.68107 * 187.55473 * 16 13 12 46 46 H 1.08999 * 109.67837 * 308.10252 * 16 13 12 47 47 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.67790 * 69.13106 * 26 17 16 49 49 H 1.08995 * 109.68681 * 189.69162 * 26 17 16 50 50 H 1.09000 * 109.50890 * 172.27299 * 27 26 17 51 51 H 1.08998 * 109.51173 * 292.42172 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.5240 2.0408 -1.0705 5 6 2.8707 3.2935 -0.6896 6 6 2.5667 3.4284 0.6686 7 6 2.0406 2.2248 1.0875 8 6 1.5822 1.9038 2.4433 9 8 1.6063 0.7526 2.8371 10 7 1.1344 2.8838 3.2529 11 6 0.8545 2.6149 4.6700 12 6 -0.5761 3.0618 4.9866 13 6 -0.7513 4.5264 4.5806 14 6 -0.5196 4.6738 3.0755 15 6 0.9118 4.2448 2.7380 16 6 -2.1736 4.9829 4.9228 17 7 -2.3118 5.0145 6.3875 18 6 -3.3641 4.3976 7.0099 19 1 -3.2462 4.0064 8.0096 20 6 -4.5823 4.2751 6.3558 21 7 -4.8268 4.9929 5.2799 22 14 -5.8748 3.0916 7.0024 23 1 -6.2482 3.4750 8.3877 24 1 -7.0770 3.1478 6.1326 25 1 -5.3268 1.7114 7.0016 26 6 -1.2859 5.7291 7.1636 27 6 0.0931 5.2332 6.7133 28 8 0.1887 5.3354 5.2905 29 1 -0.3633 0.4370 -0.9301 30 1 -0.3634 -1.0240 0.0865 31 1 -0.3633 0.5870 0.8435 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6323 1.6342 -2.0652 35 1 3.3009 4.0548 -1.3235 36 1 2.7175 4.3088 1.2757 37 1 1.5568 3.1692 5.2926 38 1 0.9558 1.5475 4.8663 39 1 -1.2816 2.4436 4.4314 40 1 -0.7623 2.9556 6.0554 41 1 -1.2254 4.0427 2.5353 42 1 -0.6654 5.7142 2.7852 43 1 1.0503 4.2526 1.6569 44 1 1.6185 4.9328 3.2019 45 1 -2.3471 5.9792 4.5162 46 1 -2.8951 4.2831 4.5011 47 1 -5.6782 4.9075 4.8230 48 1 -1.3681 6.8007 6.9817 49 1 -1.4206 5.5250 8.2257 50 1 0.8684 5.8446 7.1750 51 1 0.2217 4.1932 7.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949528838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:15 Heat of formation + Delta-G solvation = 9.108752 kcal Electronic energy + Delta-G solvation = -32807.353753 eV Core-core repulsion = 28708.901958 eV Total energy + Delta-G solvation = -4098.451795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60300 -39.95018 -38.52495 -36.14225 -34.43113 -34.23110 -32.34780 -31.38636 -31.16529 -29.43965 -29.16646 -28.16138 -26.52286 -24.14902 -23.66371 -23.28651 -22.99747 -21.75919 -20.76452 -20.43630 -19.15449 -18.54335 -17.31769 -16.81148 -16.42321 -15.57565 -15.51298 -15.33557 -14.98918 -14.65235 -14.42835 -14.38651 -14.16112 -13.93167 -13.60013 -13.55607 -13.49958 -13.10332 -12.81656 -12.76253 -12.57961 -12.39508 -12.21671 -12.04191 -11.92411 -11.61153 -11.51838 -11.40917 -11.00736 -10.93119 -10.84128 -10.63830 -10.58842 -10.28599 -10.16758 -9.95265 -9.81823 -9.39319 -8.98449 -8.78763 -8.53895 -8.47595 -8.17587 -6.67331 -5.84143 -3.30386 1.50429 2.49202 2.68025 3.25530 3.34130 3.35580 3.40275 3.41206 4.33973 4.44585 4.49966 4.55341 4.82069 4.86645 5.06365 5.08962 5.18843 5.24767 5.30004 5.34564 5.37993 5.46704 5.49049 5.52848 5.61153 5.65199 5.71864 5.82603 5.89798 5.91064 5.98072 5.98588 6.00755 6.06517 6.17892 6.24831 6.26166 6.40446 6.53305 6.55785 6.69750 6.72980 6.81526 6.89205 6.92521 7.09294 7.12463 7.48490 7.53835 7.71998 7.96743 8.23883 8.36260 9.12579 9.74838 10.34028 11.23515 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.003294 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.534319 B = 8499.281157 C = 9391.192777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.409 5.409 4 C 0.008 3.992 5 C -0.208 4.208 6 C -0.148 4.148 7 C -0.041 4.041 8 C 0.587 3.413 9 O -0.555 6.555 10 N -0.591 5.591 11 C 0.119 3.881 12 C -0.144 4.144 13 C 0.096 3.904 14 C -0.115 4.115 15 C 0.097 3.903 16 C 0.161 3.839 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.046 3.954 28 O -0.381 6.381 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.087 0.913 47 H 0.255 0.745 48 H 0.024 0.976 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 -4.500 -11.723 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.083 5.083 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.174 4.174 7 C -0.155 4.155 8 C 0.376 3.624 9 O -0.435 6.435 10 N -0.323 5.323 11 C -0.003 4.003 12 C -0.183 4.183 13 C 0.055 3.945 14 C -0.154 4.154 15 C -0.025 4.025 16 C 0.035 3.965 17 N -0.316 5.316 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.016 4.016 27 C -0.032 4.032 28 O -0.301 6.301 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.499 -5.362 -11.649 19.356 hybrid contribution -1.056 -0.563 0.424 1.270 sum 13.442 -5.925 -11.226 18.488 Atomic orbital electron populations 1.22088 0.93940 1.03307 1.02909 1.22024 0.96003 0.79772 1.04791 1.44074 1.45388 1.11300 1.07506 1.21972 1.04367 0.94008 0.92304 1.20821 1.09495 0.96957 0.95979 1.21548 1.03850 0.96149 0.95892 1.20104 1.13854 0.92190 0.89329 1.17028 0.77276 0.84677 0.83434 1.90761 1.56975 1.19574 1.76212 1.47844 1.63835 1.10330 1.10279 1.21623 0.97230 1.01789 0.79622 1.22305 0.95164 0.97118 1.03692 1.22146 0.92653 0.89181 0.90539 1.21838 0.96151 1.02553 0.94834 1.22295 0.97648 0.82075 1.00446 1.21305 0.90783 0.99680 0.84732 1.44003 1.25501 1.60729 1.01339 1.19094 0.88702 1.30072 1.00653 0.91709 1.25099 0.96730 0.98885 0.98503 1.70003 1.23661 1.39768 1.21108 0.86386 0.81008 0.81220 0.78253 1.20809 1.21567 1.20926 1.21594 0.88928 0.95135 0.95973 1.23014 0.98438 1.00012 0.81769 1.87767 1.57530 1.67064 1.17702 0.92150 0.90592 0.91656 0.89208 0.87924 0.81745 0.84117 0.83280 0.91305 0.89635 0.91235 0.89205 0.90575 0.89975 0.88361 0.90499 0.95479 0.89476 0.93505 0.95774 0.92200 0.90311 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.19 37.16 0.38 -1.28 16 2 C 0.09 0.95 6.29 -4.04 -0.03 0.92 16 3 N -0.41 -4.77 2.78 -112.88 -0.31 -5.08 16 4 C 0.01 0.08 11.35 -16.91 -0.19 -0.11 16 5 C -0.21 -2.10 10.81 -39.98 -0.43 -2.53 16 6 C -0.15 -1.74 8.45 -39.12 -0.33 -2.07 16 7 C -0.04 -0.56 6.30 -81.98 -0.52 -1.07 16 8 C 0.59 9.23 7.24 -12.85 -0.09 9.14 16 9 O -0.56 -10.01 14.75 5.19 0.08 -9.93 16 10 N -0.59 -8.91 2.98 -174.09 -0.52 -9.43 16 11 C 0.12 1.89 6.20 -3.71 -0.02 1.87 16 12 C -0.14 -2.59 4.33 -26.64 -0.12 -2.71 16 13 C 0.10 1.76 0.68 -90.50 -0.06 1.70 16 14 C -0.12 -1.80 5.11 -26.63 -0.14 -1.94 16 15 C 0.10 1.31 4.86 -3.56 -0.02 1.30 16 16 C 0.16 3.71 4.06 -3.55 -0.01 3.70 16 17 N -0.59 -14.39 2.54 -171.85 -0.44 -14.83 16 18 C -0.26 -6.82 9.62 -15.06 -0.14 -6.97 16 19 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 20 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 21 N -0.90 -25.63 11.27 55.49 0.63 -25.00 16 22 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.11 2.26 6.74 -3.53 -0.02 2.24 16 27 C 0.05 0.79 6.60 37.31 0.25 1.03 16 28 O -0.38 -6.90 9.00 -35.23 -0.32 -7.21 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.10 1.20 6.87 -51.93 -0.36 0.85 16 34 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.15 1.56 6.37 -52.49 -0.33 1.22 16 37 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 38 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.74 6.16 -51.93 -0.32 1.42 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.10 1.19 4.36 -51.93 -0.23 0.96 16 44 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 2.25 6.34 -51.93 -0.33 1.92 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 51 H 0.05 0.78 6.29 -51.93 -0.33 0.45 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -31.48 388.42 -9.73 -41.22 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.09 Total: 4.74 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.59 Total: 3.32 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.64 Total: -54.34 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.24 Total: -17.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.48 -9.73 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949528838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.328 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds