Wall clock time and date at job start Wed Apr 1 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47496 * 2 1 4 4 C 1.35531 * 125.68048 * 256.51408 * 3 2 1 5 5 C 1.35449 * 108.87370 * 180.02562 * 4 3 2 6 6 C 1.39833 * 107.86346 * 359.74018 * 5 4 3 7 7 C 1.37654 * 125.67684 * 76.53582 * 3 2 1 8 8 C 1.46681 * 126.23311 * 359.97438 * 7 3 2 9 9 O 1.21693 * 119.99855 * 27.55303 * 8 7 3 10 10 N 1.34771 * 119.99818 * 207.54844 * 8 7 3 11 11 C 1.46925 * 120.63617 * 188.82787 * 10 8 7 12 12 C 1.53192 * 108.89933 * 233.73513 * 11 10 8 13 13 C 1.52984 * 109.34722 * 305.36600 * 12 11 10 14 14 C 1.52999 * 109.63322 * 61.21133 * 13 12 11 15 15 C 1.47203 * 120.82533 * 8.98012 * 10 8 7 16 16 C 1.53252 * 109.39985 * 181.12698 * 13 12 11 17 17 N 1.47154 * 108.40798 * 67.83039 * 16 13 12 18 18 C 1.36943 * 120.98862 * 230.45282 * 17 16 13 19 19 H 1.07999 * 119.99788 * 150.45564 * 18 17 16 20 20 C 1.38811 * 119.99790 * 330.46198 * 18 17 16 21 21 N 1.31627 * 119.99949 * 344.99474 * 20 18 17 22 22 Si 1.86799 * 120.00130 * 164.99873 * 20 18 17 23 23 H 1.48505 * 109.46946 * 59.99468 * 22 20 18 24 24 H 1.48494 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47313 * 299.99738 * 22 20 18 26 26 C 1.47155 * 118.02966 * 50.47041 * 17 16 13 27 27 C 1.53302 * 108.36926 * 309.41353 * 26 17 16 28 28 O 1.42897 * 109.56372 * 300.96220 * 13 12 11 29 29 H 1.09000 * 109.46851 * 64.83174 * 1 2 3 30 30 H 1.08997 * 109.47456 * 184.83127 * 1 2 3 31 31 H 1.08996 * 109.47010 * 304.83716 * 1 2 3 32 32 H 1.09003 * 109.47173 * 240.00068 * 2 1 3 33 33 H 1.08999 * 109.47242 * 120.00576 * 2 1 3 34 34 H 1.08005 * 125.56180 * 0.05637 * 4 3 2 35 35 H 1.08005 * 126.06939 * 180.02562 * 5 4 3 36 36 H 1.08001 * 126.45806 * 180.29957 * 6 5 4 37 37 H 1.09000 * 109.58307 * 113.87428 * 11 10 8 38 38 H 1.09004 * 109.58551 * 353.59395 * 11 10 8 39 39 H 1.09001 * 109.49414 * 65.32944 * 12 11 10 40 40 H 1.09003 * 109.49635 * 185.38058 * 12 11 10 41 41 H 1.08999 * 109.49234 * 58.74064 * 14 13 12 42 42 H 1.08992 * 109.49434 * 178.82070 * 14 13 12 43 43 H 1.08999 * 109.53081 * 6.47060 * 15 10 8 44 44 H 1.08994 * 109.67615 * 246.16828 * 15 10 8 45 45 H 1.08999 * 109.68107 * 187.55473 * 16 13 12 46 46 H 1.08999 * 109.67837 * 308.10252 * 16 13 12 47 47 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.67790 * 69.13106 * 26 17 16 49 49 H 1.08995 * 109.68681 * 189.69162 * 26 17 16 50 50 H 1.09000 * 109.50890 * 172.27299 * 27 26 17 51 51 H 1.08998 * 109.51173 * 292.42172 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.5240 2.0408 -1.0705 5 6 2.8707 3.2935 -0.6896 6 6 2.5667 3.4284 0.6686 7 6 2.0406 2.2248 1.0875 8 6 1.5822 1.9038 2.4433 9 8 1.6063 0.7526 2.8371 10 7 1.1344 2.8838 3.2529 11 6 0.8545 2.6149 4.6700 12 6 -0.5761 3.0618 4.9866 13 6 -0.7513 4.5264 4.5806 14 6 -0.5196 4.6738 3.0755 15 6 0.9118 4.2448 2.7380 16 6 -2.1736 4.9829 4.9228 17 7 -2.3118 5.0145 6.3875 18 6 -3.3641 4.3976 7.0099 19 1 -3.2462 4.0064 8.0096 20 6 -4.5823 4.2751 6.3558 21 7 -4.8268 4.9929 5.2799 22 14 -5.8748 3.0916 7.0024 23 1 -6.2482 3.4750 8.3877 24 1 -7.0770 3.1478 6.1326 25 1 -5.3268 1.7114 7.0016 26 6 -1.2859 5.7291 7.1636 27 6 0.0931 5.2332 6.7133 28 8 0.1887 5.3354 5.2905 29 1 -0.3633 0.4370 -0.9301 30 1 -0.3634 -1.0240 0.0865 31 1 -0.3633 0.5870 0.8435 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6323 1.6342 -2.0652 35 1 3.3009 4.0548 -1.3235 36 1 2.7175 4.3088 1.2757 37 1 1.5568 3.1692 5.2926 38 1 0.9558 1.5475 4.8663 39 1 -1.2816 2.4436 4.4314 40 1 -0.7623 2.9556 6.0554 41 1 -1.2254 4.0427 2.5353 42 1 -0.6654 5.7142 2.7852 43 1 1.0503 4.2526 1.6569 44 1 1.6185 4.9328 3.2019 45 1 -2.3471 5.9792 4.5162 46 1 -2.8951 4.2831 4.5011 47 1 -5.6782 4.9075 4.8230 48 1 -1.3681 6.8007 6.9817 49 1 -1.4206 5.5250 8.2257 50 1 0.8684 5.8446 7.1750 51 1 0.2217 4.1932 7.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949528838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:14 Heat of formation + Delta-G solvation = -8.869478 kcal Electronic energy + Delta-G solvation = -32808.133347 eV Core-core repulsion = 28708.901958 eV Total energy + Delta-G solvation = -4099.231389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50699 -41.30225 -39.84469 -37.50149 -36.17718 -35.12575 -33.74694 -33.21032 -32.56893 -30.27508 -30.24640 -29.61666 -28.27259 -25.60384 -24.91433 -24.49215 -24.38529 -23.08344 -21.84714 -21.60746 -20.43875 -19.79407 -18.83313 -18.27623 -17.59750 -17.20211 -16.59585 -16.52777 -16.28168 -16.11974 -15.80019 -15.75125 -15.41425 -15.29371 -15.11558 -14.74928 -14.63657 -14.60872 -14.33485 -13.85467 -13.54516 -13.49229 -13.33705 -13.21952 -13.14975 -12.94998 -12.77747 -12.73827 -12.69280 -12.43698 -12.29056 -12.22796 -12.19482 -12.13815 -11.72166 -11.66261 -11.11829 -10.89279 -10.69513 -10.45680 -9.73213 -9.61150 -9.07641 -8.65780 -7.90593 -5.40143 0.54688 1.42676 1.44853 1.51043 1.56590 1.88419 2.25018 2.29887 2.45377 2.89537 3.23257 3.47504 3.55316 3.78923 3.82997 3.93034 4.00831 4.05322 4.10673 4.19961 4.29384 4.33425 4.36550 4.44294 4.45946 4.49789 4.54229 4.55388 4.68022 4.71229 4.76780 4.81201 4.83780 4.89021 4.93825 4.98819 5.07608 5.08626 5.12783 5.21391 5.26044 5.31677 5.32644 5.48747 5.56158 5.60922 5.90704 6.06206 6.31322 6.34622 6.41817 6.43704 7.06914 7.07968 7.76486 8.31640 9.14078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.003294 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.534319 B = 8499.281157 C = 9391.192777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.417 5.417 4 C 0.023 3.977 5 C -0.217 4.217 6 C -0.144 4.144 7 C -0.083 4.083 8 C 0.583 3.417 9 O -0.589 6.589 10 N -0.594 5.594 11 C 0.130 3.870 12 C -0.133 4.133 13 C 0.108 3.892 14 C -0.113 4.113 15 C 0.109 3.891 16 C 0.171 3.829 17 N -0.610 5.610 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.044 4.044 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.105 3.895 27 C 0.052 3.948 28 O -0.377 6.377 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.203 0.797 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.090 0.910 45 H -0.002 1.002 46 H 0.052 0.948 47 H 0.250 0.750 48 H 0.015 0.985 49 H 0.067 0.933 50 H 0.118 0.882 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.990 -4.569 -13.262 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.091 5.091 4 C -0.112 4.112 5 C -0.241 4.241 6 C -0.170 4.170 7 C -0.195 4.195 8 C 0.375 3.625 9 O -0.471 6.471 10 N -0.326 5.326 11 C 0.008 3.992 12 C -0.172 4.172 13 C 0.067 3.933 14 C -0.152 4.152 15 C -0.012 4.012 16 C 0.045 3.955 17 N -0.334 5.334 18 C -0.393 4.393 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.220 1.220 25 H -0.206 1.206 26 C -0.021 4.021 27 C -0.026 4.026 28 O -0.296 6.296 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.220 0.780 35 H 0.184 0.816 36 H 0.177 0.823 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.016 0.984 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.085 0.915 50 H 0.136 0.864 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.828 -5.411 -13.167 22.042 hybrid contribution -1.759 -0.501 0.890 2.034 sum 15.069 -5.912 -12.277 20.317 Atomic orbital electron populations 1.22037 0.94384 1.03473 1.01771 1.22099 0.95591 0.79442 1.05501 1.44281 1.45548 1.11666 1.07566 1.22694 1.01731 0.93720 0.93053 1.21193 1.09544 0.97899 0.95435 1.21805 1.02625 0.95630 0.96939 1.19941 1.16810 0.93809 0.88967 1.17424 0.76623 0.84116 0.84372 1.90730 1.58498 1.20866 1.77023 1.47887 1.63840 1.10978 1.09859 1.21425 0.95677 1.01378 0.80736 1.22130 0.96298 0.96486 1.02244 1.21884 0.89801 0.89200 0.92367 1.21829 0.97755 1.03050 0.92538 1.22328 0.95915 0.81312 1.01679 1.21088 0.93078 0.97131 0.84178 1.44263 1.25880 1.61269 1.01999 1.19423 0.89425 1.29707 1.00788 0.91482 1.25809 0.98710 1.00513 0.99008 1.70157 1.23842 1.41400 1.22428 0.85422 0.78450 0.79281 0.77804 1.19928 1.21984 1.20598 1.21789 0.89806 0.94345 0.96140 1.23068 0.97221 1.01009 0.81281 1.87779 1.56683 1.66881 1.18255 0.90889 0.89362 0.95468 0.85342 0.90307 0.77972 0.81606 0.82295 0.89962 0.90488 0.93437 0.90757 0.91589 0.89116 0.86482 0.89163 0.98433 0.92933 0.94099 0.96656 0.91460 0.86425 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.19 71.98 0.73 -2.39 16 2 C 0.09 1.75 6.29 86.38 0.54 2.29 16 3 N -0.42 -8.89 2.78 -511.03 -1.42 -10.31 16 4 C 0.02 0.36 11.35 83.48 0.95 1.31 16 5 C -0.22 -3.58 10.81 22.01 0.24 -3.35 16 6 C -0.14 -3.01 8.45 22.57 0.19 -2.81 16 7 C -0.08 -2.14 6.30 40.35 0.25 -1.89 16 8 C 0.58 18.43 7.24 86.45 0.63 19.06 16 9 O -0.59 -21.87 14.75 -4.33 -0.06 -21.94 16 10 N -0.59 -17.73 2.98 -822.91 -2.46 -20.19 16 11 C 0.13 4.12 6.20 86.36 0.54 4.66 16 12 C -0.13 -4.90 4.33 30.65 0.13 -4.77 16 13 C 0.11 4.03 0.68 -10.71 -0.01 4.03 16 14 C -0.11 -3.54 5.11 30.66 0.16 -3.38 16 15 C 0.11 2.79 4.86 86.31 0.42 3.21 16 16 C 0.17 8.25 4.06 86.34 0.35 8.60 16 17 N -0.61 -30.42 2.54 -697.60 -1.77 -32.19 16 18 C -0.26 -14.39 9.62 84.03 0.81 -13.58 16 19 H 0.07 3.56 7.87 -2.91 -0.02 3.53 16 20 C -0.04 -2.48 4.97 84.86 0.42 -2.06 16 21 N -0.93 -55.17 11.27 21.65 0.24 -54.93 16 22 Si 0.96 45.03 29.58 68.60 2.03 47.06 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C 0.10 4.27 6.74 86.36 0.58 4.85 16 27 C 0.05 1.69 6.60 72.08 0.48 2.17 16 28 O -0.38 -13.12 9.00 -148.98 -1.34 -14.46 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 0.73 7.89 -2.39 -0.02 0.71 16 32 H 0.13 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.08 1.86 6.87 -2.39 -0.02 1.84 16 34 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.16 2.87 6.37 -2.91 -0.02 2.85 16 37 H 0.08 2.40 7.83 -2.39 -0.02 2.38 16 38 H 0.08 2.59 7.00 -2.38 -0.02 2.57 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.95 6.16 -2.39 -0.01 2.94 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.12 2.61 4.36 -2.39 -0.01 2.60 16 44 H 0.09 2.13 7.83 -2.39 -0.02 2.11 16 45 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 46 H 0.05 2.88 6.34 -2.39 -0.02 2.86 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 50 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 51 H 0.05 1.66 6.29 -2.39 -0.02 1.64 16 Total: -1.00 -71.75 388.42 3.55 -68.20 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.92 Total: 22.81 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 7.41 Total: 15.94 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.40 Total: -117.61 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.40 Total: -36.40 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.75 3.55 -68.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949528838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.330 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds