Wall clock time and date at job start Wed Apr 1 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46702 * 2 1 4 4 C 1.34776 * 120.00255 * 83.75887 * 3 2 1 5 5 O 1.21496 * 120.00074 * 184.82585 * 4 3 2 6 6 C 1.48334 * 119.99810 * 4.82443 * 4 3 2 7 7 N 1.31495 * 127.15436 * 354.71366 * 6 4 3 8 8 O 1.21430 * 111.52791 * 179.71870 * 7 6 4 9 9 C 1.33191 * 111.56455 * 359.96374 * 8 7 6 10 10 C 1.35371 * 106.63962 * 0.07598 * 9 8 7 11 11 C 1.50066 * 124.94050 * 179.80196 * 10 9 8 12 12 C 1.53545 * 108.22866 * 343.94415 * 11 10 9 13 13 C 1.53000 * 109.46530 * 289.17461 * 12 11 10 14 14 C 1.53002 * 109.46470 * 169.20165 * 12 11 10 15 15 C 1.53102 * 109.51281 * 49.18948 * 12 11 10 16 16 C 1.50597 * 129.59966 * 180.18944 * 9 8 7 17 17 C 1.46506 * 120.00130 * 263.75557 * 3 2 1 18 18 C 1.53947 * 113.74164 * 222.85758 * 17 3 2 19 19 N 1.47815 * 86.03402 * 222.08200 * 18 17 3 20 20 C 1.36934 * 134.45905 * 204.64555 * 19 18 17 21 21 H 1.07997 * 120.00654 * 184.83616 * 20 19 18 22 22 C 1.38816 * 119.99736 * 4.83156 * 20 19 18 23 23 N 1.31616 * 120.00151 * 5.04938 * 22 20 19 24 24 Si 1.86805 * 120.00015 * 185.04617 * 22 20 19 25 25 H 1.48497 * 109.46704 * 95.00329 * 24 22 20 26 26 H 1.48501 * 109.46972 * 215.00275 * 24 22 20 27 27 H 1.48498 * 109.46851 * 335.00135 * 24 22 20 28 28 C 1.47584 * 91.05196 * 24.54585 * 19 18 17 29 29 H 1.08999 * 109.47226 * 299.99469 * 1 2 3 30 30 H 1.09003 * 109.47307 * 60.00129 * 1 2 3 31 31 H 1.09006 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46997 * 240.00060 * 2 1 3 33 33 H 1.08995 * 109.47452 * 120.00168 * 2 1 3 34 34 H 1.08991 * 109.71430 * 224.25426 * 11 10 9 35 35 H 1.09006 * 109.74226 * 103.64387 * 11 10 9 36 36 H 1.09001 * 109.47662 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.47379 * 300.04535 * 13 12 11 38 38 H 1.09009 * 109.46972 * 60.04125 * 13 12 11 39 39 H 1.09003 * 109.46978 * 299.96011 * 14 12 11 40 40 H 1.09004 * 109.47280 * 59.95814 * 14 12 11 41 41 H 1.09000 * 109.47437 * 179.97438 * 14 12 11 42 42 H 1.08998 * 109.43284 * 170.06376 * 15 12 11 43 43 H 1.09001 * 109.38601 * 50.19095 * 15 12 11 44 44 H 1.09007 * 109.69789 * 282.91916 * 16 9 8 45 45 H 1.09002 * 109.69672 * 43.50042 * 16 9 8 46 46 H 1.09001 * 112.94252 * 354.44379 * 17 3 2 47 47 H 1.08993 * 113.77250 * 336.34517 * 18 17 3 48 48 H 1.08994 * 113.76865 * 107.74652 * 18 17 3 49 49 H 0.97001 * 120.00362 * 179.97438 * 23 22 20 50 50 H 1.08998 * 113.77126 * 221.14990 * 28 19 18 51 51 H 1.09005 * 113.76241 * 89.75365 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1232 2.0589 1.1602 5 8 2.4438 3.2308 1.1524 6 6 1.8471 1.3741 2.4467 7 7 1.4004 0.1487 2.6143 8 8 1.2813 -0.1251 3.7913 9 6 1.6384 0.8949 4.5698 10 6 2.0150 1.8994 3.7441 11 6 2.4921 3.2490 4.1945 12 6 2.1009 3.4295 5.6683 13 6 0.5850 3.6065 5.7755 14 6 2.7998 4.6677 6.2333 15 6 2.5280 2.1942 6.4657 16 6 1.6541 0.9961 6.0722 17 6 2.3924 2.0259 -1.2612 18 6 3.6943 2.8433 -1.1771 19 7 2.9867 3.8606 -1.9830 20 6 3.3848 4.8582 -2.8323 21 1 2.6543 5.5343 -3.2513 22 6 4.7275 5.0005 -3.1549 23 7 5.6046 4.1184 -2.7250 24 14 5.2893 6.4439 -4.1990 25 1 5.7502 7.5445 -3.3150 26 1 6.4066 6.0139 -5.0778 27 1 4.1579 6.9207 -5.0343 28 6 1.6796 3.3681 -1.5067 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0214 4.0254 3.5915 35 1 3.5755 3.3098 4.0916 36 1 0.3072 3.7350 6.8217 37 1 0.2808 4.4859 5.2078 38 1 0.0868 2.7242 5.3733 39 1 3.8799 4.5417 6.1574 40 1 2.4959 5.5473 5.6658 41 1 2.5219 4.7962 7.2795 42 1 2.4127 2.3927 7.5312 43 1 3.5722 1.9676 6.2500 44 1 0.6391 1.1450 6.4410 45 1 2.0697 0.0827 6.4977 46 1 2.3550 1.3469 -2.1130 47 1 3.9403 3.1751 -0.1685 48 1 4.5369 2.3817 -1.6918 49 1 6.5428 4.2176 -2.9507 50 1 0.9167 3.3246 -2.2841 51 1 1.3325 3.8544 -0.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950975447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:18 Heat of formation + Delta-G solvation = 71.391057 kcal Electronic energy + Delta-G solvation = -32429.834279 eV Core-core repulsion = 28334.083248 eV Total energy + Delta-G solvation = -4095.751031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.16439 -41.59127 -39.96955 -38.71522 -36.89700 -34.97855 -34.12409 -33.76731 -31.42946 -31.29461 -29.46614 -28.34609 -28.12874 -26.65051 -26.43265 -24.86837 -24.50817 -23.85313 -22.74287 -21.84377 -20.21350 -19.14369 -18.82575 -18.70391 -18.28608 -17.72008 -17.14257 -16.79619 -16.33076 -15.97977 -15.77742 -15.51710 -15.39952 -15.32195 -14.86403 -14.51250 -14.36141 -14.24609 -14.19733 -13.96738 -13.78490 -13.48241 -13.09496 -13.04756 -12.95891 -12.87202 -12.77131 -12.67658 -12.59300 -12.56546 -12.35458 -12.09685 -11.96596 -11.74561 -11.63989 -11.57666 -11.50972 -11.37969 -11.16373 -11.09551 -10.73219 -10.06881 -9.66601 -8.92626 -7.92420 -5.28490 0.04776 0.65976 1.41094 1.44866 1.53734 1.65913 1.98132 2.03205 2.45406 2.79889 3.23655 3.40294 3.45349 3.56080 3.75020 3.79771 3.88742 3.94487 4.03348 4.12208 4.17400 4.21132 4.36001 4.40677 4.46591 4.50168 4.55617 4.63825 4.73067 4.73971 4.78041 4.81746 4.88591 4.92246 4.93117 4.97736 5.01757 5.04519 5.13527 5.16239 5.17242 5.22138 5.23015 5.29337 5.38194 5.43934 5.45114 5.54408 5.76349 5.88035 6.26898 6.86499 6.89382 7.08615 7.55713 8.52622 9.23236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003265 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.755375 B = 8573.734394 C =10146.440141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.582 3.418 5 O -0.541 6.541 6 C -0.034 4.034 7 N -0.333 5.333 8 O 0.131 5.869 9 C -0.015 4.015 10 C -0.171 4.171 11 C -0.034 4.034 12 C -0.063 4.063 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.105 4.105 16 C -0.033 4.033 17 C 0.124 3.876 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.238 4.238 21 H 0.082 0.918 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.984 3.016 25 H -0.291 1.291 26 H -0.288 1.288 27 H -0.264 1.264 28 C 0.116 3.884 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.130 0.870 47 H 0.023 0.977 48 H 0.048 0.952 49 H 0.249 0.751 50 H 0.058 0.942 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 -11.747 23.290 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 N -0.318 5.318 4 C 0.368 3.632 5 O -0.417 6.417 6 C -0.190 4.190 7 N -0.037 5.037 8 O 0.058 5.942 9 C -0.080 4.080 10 C -0.177 4.177 11 C -0.072 4.072 12 C -0.063 4.063 13 C -0.199 4.199 14 C -0.197 4.197 15 C -0.142 4.142 16 C -0.070 4.070 17 C 0.020 3.980 18 C 0.021 3.979 19 N -0.355 5.355 20 C -0.366 4.366 21 H 0.100 0.900 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.811 3.189 25 H -0.218 1.218 26 H -0.214 1.214 27 H -0.188 1.188 28 C -0.010 4.010 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.148 0.852 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.499 -11.900 22.147 27.647 hybrid contribution 0.968 1.792 -0.914 2.232 sum -10.531 -10.109 21.234 25.767 Atomic orbital electron populations 1.22006 0.94413 1.03294 1.01052 1.22130 0.95813 0.80311 1.04751 1.48032 1.63183 1.15258 1.05372 1.17385 0.77740 0.85539 0.82505 1.90832 1.47641 1.16540 1.86656 1.22939 1.07006 0.92997 0.96040 1.74654 1.17496 1.14843 0.96679 1.84655 1.61287 1.36849 1.11366 1.24734 0.99799 0.85428 0.98040 1.20777 1.06768 1.00261 0.89858 1.20049 0.99928 0.90247 0.96930 1.20716 0.96696 0.96993 0.91920 1.21945 0.93809 1.01163 1.02972 1.21843 1.00167 0.95962 1.01744 1.21762 0.99306 0.91511 1.01629 1.20613 1.04161 1.01607 0.80654 1.23578 0.96097 0.93078 0.85226 1.22615 0.94241 0.87673 0.93343 1.45973 1.02791 1.37887 1.48858 1.19419 0.92782 1.06133 1.18244 0.90002 1.25697 0.95758 1.01861 1.02602 1.70036 1.01564 1.37290 1.51050 0.84988 0.77910 0.78193 0.77797 1.21805 1.21429 1.18810 1.22958 0.89667 0.91871 0.96540 0.94377 0.92806 0.89004 0.88466 0.88601 0.92538 0.91749 0.89620 0.94272 0.92903 0.92718 0.93801 0.89875 0.86695 0.91538 0.86185 0.86027 0.85189 0.95895 0.93393 0.94214 0.92439 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.80 71.98 0.71 -2.77 16 2 C 0.09 2.46 5.74 86.38 0.50 2.95 16 3 N -0.59 -21.23 2.75 -806.37 -2.21 -23.44 16 4 C 0.58 23.12 7.07 86.93 0.61 23.73 16 5 O -0.54 -26.02 11.77 -3.70 -0.04 -26.07 16 6 C -0.03 -1.09 6.70 42.55 0.29 -0.80 16 7 N -0.33 -8.95 7.71 -48.94 -0.38 -9.33 16 8 O 0.13 2.84 11.18 78.68 0.88 3.72 16 9 C -0.02 -0.29 6.64 24.99 0.17 -0.13 16 10 C -0.17 -4.62 5.60 -20.05 -0.11 -4.73 16 11 C -0.03 -0.90 4.45 29.83 0.13 -0.76 16 12 C -0.06 -1.02 0.77 -51.96 -0.04 -1.06 16 13 C -0.14 -2.10 7.73 71.98 0.56 -1.54 16 14 C -0.14 -2.11 8.44 71.98 0.61 -1.50 16 15 C -0.10 -1.04 4.83 30.77 0.15 -0.89 16 16 C -0.03 -0.29 5.66 29.96 0.17 -0.12 16 17 C 0.12 5.24 4.60 46.75 0.21 5.46 16 18 C 0.15 8.04 6.99 86.44 0.60 8.64 16 19 N -0.63 -36.20 3.70 -716.72 -2.65 -38.85 16 20 C -0.24 -14.52 10.70 84.03 0.90 -13.62 16 21 H 0.08 4.78 7.83 -2.91 -0.02 4.76 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 23 N -0.95 -60.93 11.29 21.65 0.24 -60.68 16 24 Si 0.98 48.35 29.56 68.60 2.03 50.38 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 27 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.12 5.48 8.27 86.48 0.72 6.20 16 29 H 0.04 0.99 7.24 -2.39 -0.02 0.97 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 2.25 7.87 -2.39 -0.02 2.23 16 33 H 0.10 2.56 5.29 -2.39 -0.01 2.55 16 34 H 0.06 1.86 7.73 -2.39 -0.02 1.84 16 35 H 0.06 1.88 8.12 -2.38 -0.02 1.86 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.05 0.82 5.66 -2.38 -0.01 0.80 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.47 8.11 -2.39 -0.02 0.45 16 43 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 44 H 0.12 0.61 6.99 -2.38 -0.02 0.59 16 45 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.13 4.90 7.90 -2.39 -0.02 4.88 16 47 H 0.02 1.39 5.70 -2.39 -0.01 1.37 16 48 H 0.05 2.85 6.87 -2.39 -0.02 2.83 16 49 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 50 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.04 1.79 6.31 -2.38 -0.02 1.78 16 Total: -1.00 -80.42 390.08 5.43 -75.00 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.93 Total: 13.77 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 6.63 Total: 15.50 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -5.00 Total: -132.30 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.84 Total: -22.35 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -80.42 5.43 -75.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950975447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.387 kcal (2) G-P(sol) polarization free energy of solvation -80.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds