Wall clock time and date at job start Wed Apr 1 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47212 * 2 1 4 4 C 1.34784 * 120.00062 * 149.66630 * 3 2 1 5 5 O 1.21643 * 119.99795 * 187.16430 * 4 3 2 6 6 C 1.47080 * 120.00147 * 7.16282 * 4 3 2 7 7 C 1.39336 * 120.58853 * 121.90902 * 6 4 3 8 8 C 1.39472 * 118.95586 * 179.97438 * 7 6 4 9 9 C 1.35756 * 120.13230 * 0.02562 * 8 7 6 10 10 N 1.35426 * 121.23434 * 0.27398 * 9 8 7 11 11 C 1.46498 * 119.47301 * 179.70273 * 10 9 8 12 12 C 1.53005 * 109.47245 * 90.00142 * 11 10 9 13 13 C 1.53002 * 109.47256 * 174.99860 * 12 11 10 14 14 C 1.52999 * 109.46924 * 294.99984 * 12 11 10 15 15 C 1.34661 * 121.05538 * 359.43879 * 10 9 8 16 16 O 1.21878 * 120.10532 * 180.28590 * 15 10 9 17 17 C 1.46496 * 120.00106 * 329.66226 * 3 2 1 18 18 C 1.53946 * 113.74362 * 222.62130 * 17 3 2 19 19 N 1.47814 * 86.03444 * 222.08191 * 18 17 3 20 20 C 1.36934 * 134.45332 * 204.63738 * 19 18 17 21 21 H 1.07999 * 120.00047 * 179.86662 * 20 19 18 22 22 C 1.38810 * 120.00352 * 359.87516 * 20 19 18 23 23 N 1.31623 * 120.00113 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00285 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47273 * 60.00010 * 24 22 20 26 26 H 1.48497 * 109.47405 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47344 * 300.00183 * 24 22 20 28 28 C 1.47578 * 91.04941 * 24.54960 * 19 18 17 29 29 H 1.08997 * 109.47241 * 300.00299 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00148 * 1 2 3 31 31 H 1.09005 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47241 * 239.99701 * 2 1 3 33 33 H 1.09008 * 109.47077 * 119.99826 * 2 1 3 34 34 H 1.07994 * 120.52032 * 359.95324 * 7 6 4 35 35 H 1.08007 * 119.93096 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.38186 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47391 * 209.99972 * 11 10 9 38 38 H 1.08998 * 109.47406 * 330.00255 * 11 10 9 39 39 H 1.09004 * 109.46779 * 54.99920 * 12 11 10 40 40 H 1.09000 * 109.46763 * 60.00025 * 13 12 11 41 41 H 1.08998 * 109.46987 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.47193 * 299.99928 * 13 12 11 43 43 H 1.09008 * 109.47412 * 60.00126 * 14 12 11 44 44 H 1.08998 * 109.47285 * 179.97438 * 14 12 11 45 45 H 1.09000 * 109.47320 * 300.00113 * 14 12 11 46 46 H 1.08998 * 112.94349 * 354.20884 * 17 3 2 47 47 H 1.09003 * 113.76701 * 336.34650 * 18 17 3 48 48 H 1.08998 * 113.77307 * 107.74352 * 18 17 3 49 49 H 0.96996 * 120.00101 * 180.02562 * 23 22 20 50 50 H 1.09005 * 113.76416 * 221.14819 * 28 19 18 51 51 H 1.08998 * 113.76884 * 89.75618 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.1928 1.6807 0.5895 5 8 3.5366 2.8418 0.7050 6 6 4.0586 0.6038 1.0932 7 6 5.3645 0.4672 0.6269 8 6 6.1559 -0.5660 1.1282 9 6 5.6535 -1.4209 2.0555 10 7 4.3834 -1.2978 2.5088 11 6 3.8786 -2.2459 3.5052 12 6 4.1643 -1.7101 4.9096 13 6 3.5285 -2.6367 5.9480 14 6 5.6764 -1.6522 5.1355 15 6 3.5786 -0.3148 2.0624 16 8 2.4400 -0.2170 2.4861 17 6 1.2302 2.4368 -0.6408 18 6 2.0723 3.4202 -1.4736 19 7 1.2289 4.4815 -0.8842 20 6 0.8712 5.7462 -1.2684 21 1 0.2205 6.3374 -0.6411 22 6 1.3446 6.2684 -2.4642 23 7 2.1378 5.5482 -3.2287 24 14 0.8559 7.9934 -2.9886 25 1 1.3110 8.9693 -1.9659 26 1 1.4897 8.3125 -4.2930 27 1 -0.6209 8.0702 -3.1234 28 6 0.9258 3.6303 0.2826 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.7575 1.1504 -0.1114 35 1 7.1706 -0.6862 0.7780 36 1 6.2770 -2.2170 2.4351 37 1 2.8036 -2.3711 3.3758 38 1 4.3746 -3.2078 3.3754 39 1 3.7434 -0.7096 5.0093 40 1 3.9494 -3.6372 5.8482 41 1 3.7324 -2.2552 6.9485 42 1 2.4512 -2.6779 5.7870 43 1 6.1293 -0.9921 4.3958 44 1 5.8799 -1.2702 6.1359 45 1 6.0973 -2.6527 5.0358 46 1 0.3552 2.0542 -1.1663 47 1 3.1178 3.4702 -1.1694 48 1 1.9463 3.3044 -2.5501 49 1 2.4689 5.9132 -4.0641 50 1 -0.1139 3.6819 0.6057 51 1 1.6338 3.7421 1.1038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952402043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:23 Heat of formation + Delta-G solvation = 45.975357 kcal Electronic energy + Delta-G solvation = -32109.245168 eV Core-core repulsion = 28012.392029 eV Total energy + Delta-G solvation = -4096.853139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88627 -39.70159 -37.48939 -36.99345 -36.31502 -34.93655 -33.53110 -31.85130 -30.46437 -29.68134 -27.77438 -27.36268 -27.34100 -24.99308 -24.48583 -23.37539 -23.00116 -22.31133 -20.82649 -20.26252 -18.95877 -17.64868 -17.41284 -16.75875 -16.47171 -16.33121 -16.01116 -15.28408 -15.23263 -15.07136 -14.70908 -14.50698 -14.30477 -14.00746 -13.50245 -13.45133 -13.28702 -12.84926 -12.76419 -12.66875 -12.50767 -12.39668 -12.27185 -12.15863 -11.85695 -11.74545 -11.43742 -11.33872 -11.20752 -11.16554 -11.07820 -10.74437 -10.65796 -10.51359 -10.20492 -9.92303 -9.86901 -9.82285 -9.29792 -9.16278 -8.49077 -8.12473 -7.77214 -6.60601 -5.57234 -2.86787 0.41949 1.63463 2.24222 3.03553 3.41008 3.51648 3.54564 3.56321 3.65461 4.13011 4.19694 4.29810 4.53049 4.57484 4.64640 4.76135 4.81502 4.89805 5.05286 5.10004 5.10384 5.22300 5.33743 5.34943 5.40454 5.44553 5.48572 5.60819 5.64851 5.68803 5.74561 5.76331 5.79497 5.84610 5.87731 5.89835 6.04588 6.12472 6.26067 6.33158 6.45345 6.58913 6.74123 6.81965 6.91942 7.17829 7.47192 7.73887 7.77662 7.82996 8.04870 8.17642 8.78160 9.24460 9.90284 10.84135 11.60459 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002674 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.830262 B =10469.124267 C =10869.694043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 N -0.584 5.584 4 C 0.576 3.424 5 O -0.513 6.513 6 C -0.248 4.248 7 C 0.032 3.968 8 C -0.230 4.230 9 C 0.141 3.859 10 N -0.489 5.489 11 C 0.093 3.907 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.154 4.154 15 C 0.523 3.477 16 O -0.523 6.523 17 C 0.086 3.914 18 C 0.158 3.842 19 N -0.604 5.604 20 C -0.212 4.212 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.112 3.888 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.050 0.950 48 H 0.066 0.934 49 H 0.251 0.749 50 H 0.034 0.966 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -25.876 14.135 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.045 4.045 3 N -0.316 5.316 4 C 0.362 3.638 5 O -0.389 6.389 6 C -0.255 4.255 7 C 0.009 3.991 8 C -0.253 4.253 9 C 0.013 3.987 10 N -0.198 5.198 11 C -0.028 4.028 12 C -0.133 4.133 13 C -0.201 4.201 14 C -0.211 4.211 15 C 0.326 3.674 16 O -0.406 6.406 17 C -0.017 4.017 18 C 0.032 3.968 19 N -0.331 5.331 20 C -0.340 4.340 21 H 0.096 0.904 22 C -0.208 4.208 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.061 0.939 50 H 0.052 0.948 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.404 -24.929 14.264 29.925 hybrid contribution 0.011 0.909 -0.349 0.974 sum 8.415 -24.019 13.915 29.006 Atomic orbital electron populations 1.21981 0.95214 1.01548 1.02745 1.22195 0.95578 0.83717 1.03043 1.47896 1.20050 1.08746 1.54912 1.17342 0.80948 0.87365 0.78164 1.90889 1.73185 1.19246 1.55560 1.21214 0.97417 1.01763 1.05142 1.21882 0.90660 0.93231 0.93306 1.20623 1.02443 0.99070 1.03138 1.22043 0.84870 0.98533 0.93280 1.45493 1.11801 1.27062 1.35465 1.22182 1.02724 0.91039 0.86866 1.21474 0.96925 1.01343 0.93550 1.21747 1.00997 0.98922 0.98423 1.21966 0.94896 1.01788 1.02476 1.16877 0.85653 0.81052 0.83831 1.90850 1.17307 1.73163 1.59291 1.24060 0.95938 0.85259 0.96455 1.22674 0.94470 0.82749 0.96927 1.45678 1.54843 1.13473 1.19062 1.18962 1.23541 0.89070 1.02428 0.90441 1.24760 1.00016 0.98437 0.97574 1.69830 1.37273 1.36406 1.13509 0.86203 0.77766 0.84282 0.77549 1.21333 1.21681 1.21235 1.22940 0.97524 0.88366 0.92620 0.91906 0.92095 0.92217 0.93640 0.87624 0.83853 0.83119 0.82032 0.87799 0.88961 0.89989 0.92414 0.91986 0.92049 0.92463 0.91990 0.92359 0.87567 0.93218 0.91615 0.93857 0.94758 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.30 37.16 0.35 -1.86 16 2 C 0.08 1.19 6.07 -4.05 -0.02 1.16 16 3 N -0.58 -11.22 3.08 -169.31 -0.52 -11.75 16 4 C 0.58 11.55 6.23 -12.67 -0.08 11.47 16 5 O -0.51 -12.51 12.84 5.24 0.07 -12.44 16 6 C -0.25 -3.78 5.08 -104.50 -0.53 -4.31 16 7 C 0.03 0.37 9.90 -38.71 -0.38 -0.01 16 8 C -0.23 -1.67 9.99 -40.01 -0.40 -2.07 16 9 C 0.14 0.86 8.20 -16.85 -0.14 0.72 16 10 N -0.49 -4.28 2.46 -119.34 -0.29 -4.58 16 11 C 0.09 0.59 4.83 -4.04 -0.02 0.57 16 12 C -0.11 -0.74 3.12 -90.62 -0.28 -1.02 16 13 C -0.14 -0.72 9.19 37.16 0.34 -0.38 16 14 C -0.15 -0.79 8.63 37.16 0.32 -0.47 16 15 C 0.52 7.10 6.28 -14.91 -0.09 7.00 16 16 O -0.52 -8.47 13.33 5.03 0.07 -8.40 16 17 C 0.09 1.91 4.01 -70.15 -0.28 1.63 16 18 C 0.16 4.25 6.79 -2.84 -0.02 4.23 16 19 N -0.60 -17.59 3.70 -177.89 -0.66 -18.24 16 20 C -0.21 -6.53 10.70 -15.06 -0.16 -6.69 16 21 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -29.31 11.39 55.49 0.63 -28.68 16 24 Si 0.91 23.65 29.55 -169.99 -5.02 18.63 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.11 2.80 8.27 -2.97 -0.02 2.78 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.88 6.24 -51.93 -0.32 0.55 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 1.62 3.15 -53.65 -0.17 1.45 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.16 0.31 7.88 -52.48 -0.41 -0.11 16 37 H 0.10 0.79 7.39 -51.93 -0.38 0.41 16 38 H 0.09 0.29 8.00 -51.93 -0.42 -0.13 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.34 6.34 -51.92 -0.33 0.01 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.11 2.19 5.88 -51.93 -0.31 1.89 16 47 H 0.05 1.44 5.77 -51.93 -0.30 1.14 16 48 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 49 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.05 1.38 6.25 -51.93 -0.32 1.05 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -39.37 397.50 -9.22 -48.59 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.95 Total: -1.41 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -1.53 Total: 12.29 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.84 Total: -63.24 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.13 Total: -20.85 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.02 Total: 18.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.37 -9.22 -48.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952402043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.570 kcal (2) G-P(sol) polarization free energy of solvation -39.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds