Wall clock time and date at job start Wed Apr 1 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47212 * 2 1 4 4 C 1.34784 * 120.00062 * 149.66630 * 3 2 1 5 5 O 1.21643 * 119.99795 * 187.16430 * 4 3 2 6 6 C 1.47080 * 120.00147 * 7.16282 * 4 3 2 7 7 C 1.39336 * 120.58853 * 121.90902 * 6 4 3 8 8 C 1.39472 * 118.95586 * 179.97438 * 7 6 4 9 9 C 1.35756 * 120.13230 * 0.02562 * 8 7 6 10 10 N 1.35426 * 121.23434 * 0.27398 * 9 8 7 11 11 C 1.46498 * 119.47301 * 179.70273 * 10 9 8 12 12 C 1.53005 * 109.47245 * 90.00142 * 11 10 9 13 13 C 1.53002 * 109.47256 * 174.99860 * 12 11 10 14 14 C 1.52999 * 109.46924 * 294.99984 * 12 11 10 15 15 C 1.34661 * 121.05538 * 359.43879 * 10 9 8 16 16 O 1.21878 * 120.10532 * 180.28590 * 15 10 9 17 17 C 1.46496 * 120.00106 * 329.66226 * 3 2 1 18 18 C 1.53946 * 113.74362 * 222.62130 * 17 3 2 19 19 N 1.47814 * 86.03444 * 222.08191 * 18 17 3 20 20 C 1.36934 * 134.45332 * 204.63738 * 19 18 17 21 21 H 1.07999 * 120.00047 * 179.86662 * 20 19 18 22 22 C 1.38810 * 120.00352 * 359.87516 * 20 19 18 23 23 N 1.31623 * 120.00113 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00285 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47273 * 60.00010 * 24 22 20 26 26 H 1.48497 * 109.47405 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47344 * 300.00183 * 24 22 20 28 28 C 1.47578 * 91.04941 * 24.54960 * 19 18 17 29 29 H 1.08997 * 109.47241 * 300.00299 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00148 * 1 2 3 31 31 H 1.09005 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47241 * 239.99701 * 2 1 3 33 33 H 1.09008 * 109.47077 * 119.99826 * 2 1 3 34 34 H 1.07994 * 120.52032 * 359.95324 * 7 6 4 35 35 H 1.08007 * 119.93096 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.38186 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47391 * 209.99972 * 11 10 9 38 38 H 1.08998 * 109.47406 * 330.00255 * 11 10 9 39 39 H 1.09004 * 109.46779 * 54.99920 * 12 11 10 40 40 H 1.09000 * 109.46763 * 60.00025 * 13 12 11 41 41 H 1.08998 * 109.46987 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.47193 * 299.99928 * 13 12 11 43 43 H 1.09008 * 109.47412 * 60.00126 * 14 12 11 44 44 H 1.08998 * 109.47285 * 179.97438 * 14 12 11 45 45 H 1.09000 * 109.47320 * 300.00113 * 14 12 11 46 46 H 1.08998 * 112.94349 * 354.20884 * 17 3 2 47 47 H 1.09003 * 113.76701 * 336.34650 * 18 17 3 48 48 H 1.08998 * 113.77307 * 107.74352 * 18 17 3 49 49 H 0.96996 * 120.00101 * 180.02562 * 23 22 20 50 50 H 1.09005 * 113.76416 * 221.14819 * 28 19 18 51 51 H 1.08998 * 113.76884 * 89.75618 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.1928 1.6807 0.5895 5 8 3.5366 2.8418 0.7050 6 6 4.0586 0.6038 1.0932 7 6 5.3645 0.4672 0.6269 8 6 6.1559 -0.5660 1.1282 9 6 5.6535 -1.4209 2.0555 10 7 4.3834 -1.2978 2.5088 11 6 3.8786 -2.2459 3.5052 12 6 4.1643 -1.7101 4.9096 13 6 3.5285 -2.6367 5.9480 14 6 5.6764 -1.6522 5.1355 15 6 3.5786 -0.3148 2.0624 16 8 2.4400 -0.2170 2.4861 17 6 1.2302 2.4368 -0.6408 18 6 2.0723 3.4202 -1.4736 19 7 1.2289 4.4815 -0.8842 20 6 0.8712 5.7462 -1.2684 21 1 0.2205 6.3374 -0.6411 22 6 1.3446 6.2684 -2.4642 23 7 2.1378 5.5482 -3.2287 24 14 0.8559 7.9934 -2.9886 25 1 1.3110 8.9693 -1.9659 26 1 1.4897 8.3125 -4.2930 27 1 -0.6209 8.0702 -3.1234 28 6 0.9258 3.6303 0.2826 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.7575 1.1504 -0.1114 35 1 7.1706 -0.6862 0.7780 36 1 6.2770 -2.2170 2.4351 37 1 2.8036 -2.3711 3.3758 38 1 4.3746 -3.2078 3.3754 39 1 3.7434 -0.7096 5.0093 40 1 3.9494 -3.6372 5.8482 41 1 3.7324 -2.2552 6.9485 42 1 2.4512 -2.6779 5.7870 43 1 6.1293 -0.9921 4.3958 44 1 5.8799 -1.2702 6.1359 45 1 6.0973 -2.6527 5.0358 46 1 0.3552 2.0542 -1.1663 47 1 3.1178 3.4702 -1.1694 48 1 1.9463 3.3044 -2.5501 49 1 2.4689 5.9132 -4.0641 50 1 -0.1139 3.6819 0.6057 51 1 1.6338 3.7421 1.1038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952402043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:22 Heat of formation + Delta-G solvation = 18.699932 kcal Electronic energy + Delta-G solvation = -32110.427919 eV Core-core repulsion = 28012.392029 eV Total energy + Delta-G solvation = -4098.035890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.78511 -41.26376 -38.73345 -38.33324 -37.17305 -36.48290 -34.40448 -34.00910 -31.52328 -30.96414 -29.42762 -28.17282 -27.88258 -26.62412 -26.32469 -24.94259 -23.83192 -23.63798 -22.17793 -21.27183 -20.31900 -18.79181 -18.58470 -18.43151 -17.82725 -17.32180 -17.08588 -16.98942 -16.49814 -16.30019 -15.95114 -15.69932 -15.49886 -15.22005 -15.07769 -14.61718 -14.34332 -14.12665 -13.87141 -13.61962 -13.56841 -13.40675 -13.31950 -13.16472 -13.05456 -12.96803 -12.81617 -12.73734 -12.56712 -12.48955 -12.27015 -12.05493 -11.92205 -11.90722 -11.80255 -11.66816 -11.50058 -11.10934 -10.96178 -10.90679 -10.50990 -9.41790 -9.00672 -8.90130 -7.91716 -5.26324 -0.41293 0.82541 1.40727 1.42385 1.47378 1.53178 1.77457 2.06485 2.47788 2.57765 3.25535 3.46786 3.51123 3.66662 3.77782 3.82450 3.84889 3.90357 3.99309 4.08430 4.15682 4.20206 4.28069 4.34778 4.42900 4.55002 4.61054 4.63841 4.70950 4.77014 4.81155 4.84206 4.89402 4.96592 4.98726 5.01124 5.02353 5.07343 5.18294 5.23842 5.25240 5.27231 5.34038 5.38064 5.40325 5.43821 5.57820 5.85761 5.89849 5.96811 6.54182 6.87865 6.88463 7.26940 7.56245 8.55454 9.25816 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002674 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.830262 B =10469.124267 C =10869.694043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 N -0.586 5.586 4 C 0.569 3.431 5 O -0.575 6.575 6 C -0.308 4.308 7 C 0.049 3.951 8 C -0.234 4.234 9 C 0.177 3.823 10 N -0.480 5.480 11 C 0.090 3.910 12 C -0.113 4.113 13 C -0.139 4.139 14 C -0.152 4.152 15 C 0.521 3.479 16 O -0.566 6.566 17 C 0.119 3.881 18 C 0.162 3.838 19 N -0.630 5.630 20 C -0.241 4.241 21 H 0.082 0.918 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.989 3.011 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.270 1.270 28 C 0.113 3.887 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.193 0.807 36 H 0.226 0.774 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.022 0.978 48 H 0.041 0.959 49 H 0.250 0.750 50 H 0.051 0.949 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -29.712 14.967 34.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.046 4.046 3 N -0.317 5.317 4 C 0.359 3.641 5 O -0.456 6.456 6 C -0.315 4.315 7 C 0.025 3.975 8 C -0.256 4.256 9 C 0.047 3.953 10 N -0.186 5.186 11 C -0.030 4.030 12 C -0.132 4.132 13 C -0.197 4.197 14 C -0.209 4.209 15 C 0.325 3.675 16 O -0.453 6.453 17 C 0.014 3.986 18 C 0.035 3.965 19 N -0.356 5.356 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.816 3.184 25 H -0.207 1.207 26 H -0.214 1.214 27 H -0.195 1.195 28 C -0.014 4.014 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.210 0.790 36 H 0.242 0.758 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.144 0.856 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.069 0.931 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.061 -28.845 15.132 34.092 hybrid contribution -0.323 1.958 -0.495 2.045 sum 9.738 -26.887 14.637 32.125 Atomic orbital electron populations 1.21960 0.94047 1.03410 1.01597 1.22449 0.96504 0.81415 1.04255 1.47963 1.19947 1.09567 1.54248 1.18181 0.81125 0.87926 0.76900 1.90827 1.74478 1.22208 1.58061 1.20747 0.98363 1.03176 1.09259 1.22112 0.89555 0.93721 0.92078 1.21047 1.03629 0.97622 1.03295 1.23095 0.83481 0.98274 0.90415 1.45566 1.12365 1.25778 1.34915 1.22486 1.02659 0.92143 0.85729 1.21426 0.98160 0.99326 0.94273 1.21722 1.00402 0.99896 0.97703 1.21971 0.93355 1.03593 1.01950 1.16616 0.85620 0.81719 0.83538 1.90805 1.19099 1.74559 1.60807 1.23445 0.95407 0.85339 0.94378 1.22444 0.93618 0.84536 0.95865 1.46079 1.55239 1.13739 1.20567 1.19418 1.24130 0.90316 1.03068 0.90071 1.25767 0.99987 1.03035 0.97421 1.70051 1.38236 1.38287 1.13677 0.85008 0.78087 0.78440 0.76870 1.20716 1.21387 1.19510 1.22935 0.97598 0.89249 0.91578 0.93533 0.92564 0.88900 0.91966 0.86849 0.84989 0.78963 0.75754 0.89423 0.83773 0.94519 0.89735 0.92315 0.93150 0.93118 0.92672 0.88919 0.85582 0.95999 0.94065 0.94124 0.93131 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.30 71.98 0.67 -3.55 16 2 C 0.07 2.33 6.07 86.38 0.52 2.85 16 3 N -0.59 -23.89 3.08 -807.80 -2.49 -26.37 16 4 C 0.57 24.70 6.23 86.56 0.54 25.24 16 5 O -0.58 -30.89 12.84 -4.17 -0.05 -30.94 16 6 C -0.31 -9.80 5.08 -19.79 -0.10 -9.90 16 7 C 0.05 1.13 9.90 22.83 0.23 1.35 16 8 C -0.23 -2.47 9.99 21.99 0.22 -2.25 16 9 C 0.18 1.19 8.20 83.56 0.69 1.87 16 10 N -0.48 -7.01 2.46 -649.69 -1.60 -8.61 16 11 C 0.09 0.82 4.83 86.38 0.42 1.24 16 12 C -0.11 -1.22 3.12 -10.79 -0.03 -1.25 16 13 C -0.14 -1.08 9.19 71.98 0.66 -0.42 16 14 C -0.15 -0.95 8.63 71.98 0.62 -0.33 16 15 C 0.52 14.17 6.28 85.17 0.53 14.70 16 16 O -0.57 -19.12 13.33 -4.92 -0.07 -19.18 16 17 C 0.12 5.57 4.01 46.75 0.19 5.75 16 18 C 0.16 9.35 6.79 86.44 0.59 9.93 16 19 N -0.63 -38.77 3.70 -716.74 -2.65 -41.42 16 20 C -0.24 -15.47 10.70 84.03 0.90 -14.57 16 21 H 0.08 4.97 7.83 -2.91 -0.02 4.95 16 22 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 23 N -0.95 -63.07 11.39 21.65 0.25 -62.83 16 24 Si 0.99 49.83 29.55 68.60 2.03 51.85 16 25 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 28 C 0.11 5.99 8.27 86.48 0.72 6.70 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.59 6.24 -2.39 -0.01 1.58 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 3.52 3.15 -29.67 -0.09 3.43 16 34 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.23 -1.18 7.88 -2.91 -0.02 -1.20 16 37 H 0.09 1.18 7.39 -2.39 -0.02 1.16 16 38 H 0.14 -0.10 8.00 -2.39 -0.02 -0.12 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.05 0.39 6.34 -2.38 -0.02 0.37 16 44 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.13 5.37 5.88 -2.39 -0.01 5.36 16 47 H 0.02 1.40 5.77 -2.39 -0.01 1.39 16 48 H 0.04 2.54 7.17 -2.39 -0.02 2.52 16 49 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.05 2.48 8.14 -2.38 -0.02 2.46 16 51 H 0.03 1.66 6.25 -2.39 -0.01 1.65 16 Total: -1.00 -97.30 397.50 4.08 -93.22 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.84 Total: 10.82 kcal Atomic # 6 Polarization: 25.64 SS G_CDS: 7.82 Total: 33.46 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -6.50 Total: -139.23 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.12 Total: -50.12 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.85 kcal Total: -97.30 4.08 -93.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952402043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.924 kcal (2) G-P(sol) polarization free energy of solvation -97.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds