Wall clock time and date at job start Wed Apr 1 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46606 * 2 1 4 4 C 1.34779 * 120.00133 * 95.00095 * 3 2 1 5 5 O 1.21648 * 119.99802 * 185.93992 * 4 3 2 6 6 C 1.47081 * 119.99729 * 5.94629 * 4 3 2 7 7 C 1.39341 * 120.58098 * 288.83173 * 6 4 3 8 8 C 1.39472 * 118.95657 * 179.97438 * 7 6 4 9 9 C 1.35763 * 120.12968 * 359.97438 * 8 7 6 10 10 N 1.35434 * 121.23338 * 0.02562 * 9 8 7 11 11 C 1.46495 * 119.47245 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47154 * 359.97438 * 11 10 9 13 13 C 1.52990 * 109.47419 * 119.99701 * 11 10 9 14 14 C 1.53005 * 109.46857 * 239.99752 * 11 10 9 15 15 C 1.34660 * 121.05241 * 359.72662 * 10 9 8 16 16 O 1.21886 * 120.10002 * 180.29034 * 15 10 9 17 17 C 1.46502 * 120.00210 * 274.99582 * 3 2 1 18 18 C 1.53489 * 114.20888 * 120.00518 * 17 3 2 19 19 N 1.47061 * 87.98796 * 87.52211 * 18 17 3 20 20 C 1.36933 * 136.05934 * 207.08846 * 19 18 17 21 21 H 1.08007 * 119.99875 * 6.20655 * 20 19 18 22 22 C 1.38808 * 120.00459 * 186.20423 * 20 19 18 23 23 N 1.31621 * 120.00615 * 194.26886 * 22 20 19 24 24 Si 1.86809 * 119.99611 * 14.26735 * 22 20 19 25 25 H 1.48497 * 109.46759 * 270.00073 * 24 22 20 26 26 H 1.48497 * 109.47119 * 29.99962 * 24 22 20 27 27 H 1.48498 * 109.47186 * 150.00055 * 24 22 20 28 28 C 1.47068 * 87.88300 * 27.34050 * 19 18 17 29 29 H 1.08992 * 109.47472 * 60.00013 * 1 2 3 30 30 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46995 * 299.99932 * 1 2 3 32 32 H 1.08999 * 109.46995 * 240.00068 * 2 1 3 33 33 H 1.08998 * 109.47095 * 119.99764 * 2 1 3 34 34 H 1.07995 * 120.52583 * 0.02562 * 7 6 4 35 35 H 1.07996 * 119.93701 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.38301 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.46747 * 60.00408 * 12 11 10 38 38 H 1.09001 * 109.47148 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47678 * 300.00514 * 12 11 10 40 40 H 1.08995 * 109.47385 * 59.99813 * 13 11 10 41 41 H 1.09001 * 109.47570 * 180.02562 * 13 11 10 42 42 H 1.09007 * 109.47170 * 299.99370 * 13 11 10 43 43 H 1.09002 * 109.47072 * 59.99488 * 14 11 10 44 44 H 1.09004 * 109.47215 * 180.02562 * 14 11 10 45 45 H 1.09008 * 109.46695 * 299.99778 * 14 11 10 46 46 H 1.09005 * 113.28033 * 346.93821 * 17 3 2 47 47 H 1.09010 * 113.46434 * 332.73738 * 18 17 3 48 48 H 1.09004 * 113.46780 * 202.30660 * 18 17 3 49 49 H 0.96996 * 119.99626 * 353.49769 * 23 22 20 50 50 H 1.09008 * 113.46051 * 87.44172 * 28 19 18 51 51 H 1.09000 * 113.46623 * 217.87331 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3388 1.9828 1.1628 5 8 2.6404 3.1612 1.1750 6 6 2.3240 1.2143 2.4167 7 6 1.1186 0.8047 2.9830 8 6 1.1441 0.0770 4.1726 9 6 2.3294 -0.2234 4.7624 10 7 3.5049 0.1714 4.2176 11 6 4.7615 -0.1746 4.8865 12 6 4.4602 -0.9700 6.1582 13 6 5.6230 -1.0209 3.9472 14 6 5.5136 1.1065 5.2528 15 6 3.5371 0.8717 3.0679 16 8 4.6051 1.2137 2.5903 17 6 2.1582 2.1088 -1.2639 18 6 1.3105 3.3852 -1.3526 19 7 2.4254 4.1075 -0.7217 20 6 2.5612 5.2266 0.0555 21 1 1.6839 5.7420 0.4180 22 6 3.8261 5.6988 0.3776 23 7 3.9723 6.5879 1.3370 24 14 5.3212 5.0722 -0.5508 25 1 5.8648 3.8739 0.1375 26 1 4.9280 4.7113 -1.9365 27 1 6.3593 6.1333 -0.5912 28 6 3.3311 3.1023 -1.2982 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1793 1.0461 2.5079 35 1 0.2191 -0.2480 4.6255 36 1 2.3352 -0.7879 5.6832 37 1 3.9242 -1.8826 5.8975 38 1 5.3952 -1.2278 6.6556 39 1 3.8465 -0.3668 6.8273 40 1 5.8376 -0.4540 3.0414 41 1 6.5578 -1.2787 4.4450 42 1 5.0872 -1.9336 3.6863 43 1 4.8998 1.7095 5.9220 44 1 6.4489 0.8492 5.7501 45 1 5.7283 1.6735 4.3469 46 1 2.0904 1.4653 -2.1412 47 1 0.4110 3.3525 -0.7376 48 1 1.1107 3.7034 -2.3758 49 1 3.1913 6.9834 1.7547 50 1 3.6641 3.3461 -2.3072 51 1 4.1533 2.8288 -0.6370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952425226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:27 Heat of formation + Delta-G solvation = 87.691720 kcal Electronic energy + Delta-G solvation = -33748.682658 eV Core-core repulsion = 29653.638476 eV Total energy + Delta-G solvation = -4095.044182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.70401 -39.84974 -37.31207 -36.79022 -35.94008 -35.00131 -32.13086 -31.81590 -30.06631 -29.81150 -28.05166 -27.46616 -27.29604 -25.01350 -24.61725 -23.83980 -22.82931 -22.37795 -20.80307 -19.86403 -18.15309 -17.48102 -17.06783 -17.01723 -16.68649 -15.86787 -15.81258 -15.34063 -14.64287 -14.52907 -14.27013 -14.19759 -14.02727 -13.90528 -13.61972 -13.35831 -13.14773 -12.89158 -12.78518 -12.59527 -12.37965 -12.20027 -12.14377 -12.11463 -12.03016 -11.61087 -11.57150 -11.33486 -11.31967 -11.23610 -10.98325 -10.92620 -10.63089 -10.22396 -9.91635 -9.85161 -9.53427 -9.29644 -8.93549 -8.66798 -8.05744 -7.79535 -7.72167 -6.49809 -5.81316 -2.64908 0.72809 1.96125 2.47906 3.46126 3.53866 3.73552 3.82571 3.85626 3.93129 4.28829 4.38905 4.55959 4.68019 4.80608 4.95218 5.03857 5.04487 5.09546 5.11533 5.15192 5.21840 5.25466 5.28217 5.46188 5.48854 5.53410 5.54856 5.58163 5.66324 5.75245 5.76431 5.78801 5.86546 5.98156 6.00134 6.05512 6.15313 6.22395 6.27922 6.28937 6.31781 6.42970 6.54337 6.56734 6.70976 6.82236 7.15465 7.45573 7.55062 8.14172 8.24065 8.65873 9.28166 9.43726 10.03197 10.85176 11.70434 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005090 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.843176 B = 5499.938381 C = 6897.961193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.598 5.598 4 C 0.532 3.468 5 O -0.392 6.392 6 C -0.224 4.224 7 C -0.004 4.004 8 C -0.235 4.235 9 C 0.129 3.871 10 N -0.485 5.485 11 C 0.147 3.853 12 C -0.161 4.161 13 C -0.163 4.163 14 C -0.167 4.167 15 C 0.531 3.469 16 O -0.517 6.517 17 C 0.105 3.895 18 C 0.105 3.895 19 N -0.593 5.593 20 C -0.245 4.245 21 H 0.069 0.931 22 C -0.020 4.020 23 N -0.950 5.950 24 Si 1.060 2.940 25 H -0.295 1.295 26 H -0.288 1.288 27 H -0.306 1.306 28 C 0.096 3.904 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.253 0.747 50 H 0.047 0.953 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -24.294 7.267 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.335 5.335 4 C 0.315 3.685 5 O -0.255 6.255 6 C -0.232 4.232 7 C -0.026 4.026 8 C -0.258 4.258 9 C 0.000 4.000 10 N -0.197 5.197 11 C 0.064 3.936 12 C -0.219 4.219 13 C -0.221 4.221 14 C -0.224 4.224 15 C 0.331 3.669 16 O -0.396 6.396 17 C 0.000 4.000 18 C -0.024 4.024 19 N -0.320 5.320 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.216 4.216 23 N -0.595 5.595 24 Si 0.894 3.106 25 H -0.223 1.223 26 H -0.214 1.214 27 H -0.234 1.234 28 C -0.031 4.031 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.237 -23.051 7.088 24.333 hybrid contribution -2.012 -0.279 0.242 2.046 sum -5.250 -23.330 7.330 25.012 Atomic orbital electron populations 1.22307 0.96539 1.01401 1.02597 1.21366 0.93878 0.83566 1.02298 1.47412 1.67797 1.12896 1.05443 1.17908 0.80539 0.87944 0.82154 1.91621 1.38874 1.11412 1.83623 1.21383 0.92953 1.07429 1.01473 1.21870 0.97599 0.89892 0.93212 1.20483 0.97215 1.08638 0.99503 1.22092 0.85019 0.95082 0.97790 1.45728 1.07107 1.45048 1.21777 1.20963 0.83102 0.96786 0.92726 1.22283 1.03671 0.99894 0.96009 1.22226 0.99194 0.99279 1.01377 1.22252 0.99904 0.96196 1.04054 1.16755 0.90460 0.79617 0.80074 1.90926 1.30996 1.53448 1.64199 1.22671 0.99897 0.92570 0.84839 1.22754 0.93564 0.90129 0.95930 1.45749 1.01470 1.29202 1.55627 1.19658 0.94443 1.00126 1.22876 0.91294 1.25303 0.98423 0.99064 0.98842 1.70869 1.31294 1.33511 1.23870 0.83807 0.76279 0.74823 0.75668 1.22253 1.21450 1.23405 1.22956 0.94876 0.88359 0.96945 0.92137 0.92170 0.92594 0.91228 0.91106 0.84760 0.83772 0.81971 0.91407 0.90035 0.91295 0.89356 0.91001 0.92532 0.92269 0.91009 0.89147 0.89311 0.94290 0.94517 0.93698 0.93585 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.11 37.16 0.38 -1.39 16 2 C 0.11 1.44 5.76 -4.04 -0.02 1.42 16 3 N -0.60 -10.89 2.74 -167.12 -0.46 -11.35 16 4 C 0.53 11.74 6.18 -12.67 -0.08 11.66 16 5 O -0.39 -11.11 10.47 5.24 0.05 -11.06 16 6 C -0.22 -4.09 4.14 -104.51 -0.43 -4.52 16 7 C 0.00 -0.05 8.50 -38.71 -0.33 -0.38 16 8 C -0.23 -2.28 9.99 -40.01 -0.40 -2.68 16 9 C 0.13 1.23 9.58 -16.85 -0.16 1.07 16 10 N -0.49 -6.38 2.53 -105.39 -0.27 -6.65 16 11 C 0.15 1.62 1.02 -131.82 -0.13 1.49 16 12 C -0.16 -1.05 7.09 37.16 0.26 -0.79 16 13 C -0.16 -1.81 8.39 37.15 0.31 -1.49 16 14 C -0.17 -2.18 8.40 37.16 0.31 -1.87 16 15 C 0.53 9.79 6.84 -14.92 -0.10 9.68 16 16 O -0.52 -11.71 12.67 5.02 0.06 -11.65 16 17 C 0.11 2.00 4.91 -67.68 -0.33 1.67 16 18 C 0.10 2.24 8.21 -8.52 -0.07 2.17 16 19 N -0.59 -16.12 1.97 -184.65 -0.36 -16.49 16 20 C -0.24 -7.80 8.62 -15.06 -0.13 -7.93 16 21 H 0.07 2.35 8.06 -52.48 -0.42 1.92 16 22 C -0.02 -0.66 5.22 -17.43 -0.09 -0.75 16 23 N -0.95 -33.53 13.70 55.49 0.76 -32.77 16 24 Si 1.06 31.09 25.46 -169.99 -4.33 26.76 16 25 H -0.29 -8.87 6.98 56.52 0.39 -8.47 16 26 H -0.29 -7.68 5.55 56.52 0.31 -7.36 16 27 H -0.31 -8.94 7.11 56.52 0.40 -8.54 16 28 C 0.10 2.30 4.56 -8.38 -0.04 2.26 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.61 5.70 -51.93 -0.30 0.31 16 32 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 33 H 0.07 0.89 6.25 -51.93 -0.32 0.56 16 34 H 0.13 1.63 5.97 -52.49 -0.31 1.31 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 0.88 5.55 -52.49 -0.29 0.59 16 37 H 0.07 0.34 7.41 -51.92 -0.38 -0.05 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.40 7.41 -51.93 -0.38 0.02 16 40 H 0.09 1.32 6.10 -51.93 -0.32 1.00 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.61 6.14 -51.92 -0.32 1.29 16 46 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 47 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.25 8.85 8.74 -40.82 -0.36 8.50 16 50 H 0.05 1.06 7.06 -51.92 -0.37 0.69 16 51 H 0.05 1.48 5.40 -51.93 -0.28 1.20 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -43.26 383.90 -7.82 -51.08 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -8.01 Total: -3.27 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -1.06 Total: 9.61 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.33 Total: -67.27 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.12 Total: -22.71 kcal Atomic # 14 Polarization: 31.09 SS G_CDS: -4.33 Total: 26.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -43.26 -7.82 -51.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952425226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.771 kcal (2) G-P(sol) polarization free energy of solvation -43.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds