Wall clock time and date at job start Wed Apr 1 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46606 * 2 1 4 4 C 1.34779 * 120.00133 * 95.00095 * 3 2 1 5 5 O 1.21648 * 119.99802 * 185.93992 * 4 3 2 6 6 C 1.47081 * 119.99729 * 5.94629 * 4 3 2 7 7 C 1.39341 * 120.58098 * 288.83173 * 6 4 3 8 8 C 1.39472 * 118.95657 * 179.97438 * 7 6 4 9 9 C 1.35763 * 120.12968 * 359.97438 * 8 7 6 10 10 N 1.35434 * 121.23338 * 0.02562 * 9 8 7 11 11 C 1.46495 * 119.47245 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47154 * 359.97438 * 11 10 9 13 13 C 1.52990 * 109.47419 * 119.99701 * 11 10 9 14 14 C 1.53005 * 109.46857 * 239.99752 * 11 10 9 15 15 C 1.34660 * 121.05241 * 359.72662 * 10 9 8 16 16 O 1.21886 * 120.10002 * 180.29034 * 15 10 9 17 17 C 1.46502 * 120.00210 * 274.99582 * 3 2 1 18 18 C 1.53489 * 114.20888 * 120.00518 * 17 3 2 19 19 N 1.47061 * 87.98796 * 87.52211 * 18 17 3 20 20 C 1.36933 * 136.05934 * 207.08846 * 19 18 17 21 21 H 1.08007 * 119.99875 * 6.20655 * 20 19 18 22 22 C 1.38808 * 120.00459 * 186.20423 * 20 19 18 23 23 N 1.31621 * 120.00615 * 194.26886 * 22 20 19 24 24 Si 1.86809 * 119.99611 * 14.26735 * 22 20 19 25 25 H 1.48497 * 109.46759 * 270.00073 * 24 22 20 26 26 H 1.48497 * 109.47119 * 29.99962 * 24 22 20 27 27 H 1.48498 * 109.47186 * 150.00055 * 24 22 20 28 28 C 1.47068 * 87.88300 * 27.34050 * 19 18 17 29 29 H 1.08992 * 109.47472 * 60.00013 * 1 2 3 30 30 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46995 * 299.99932 * 1 2 3 32 32 H 1.08999 * 109.46995 * 240.00068 * 2 1 3 33 33 H 1.08998 * 109.47095 * 119.99764 * 2 1 3 34 34 H 1.07995 * 120.52583 * 0.02562 * 7 6 4 35 35 H 1.07996 * 119.93701 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.38301 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.46747 * 60.00408 * 12 11 10 38 38 H 1.09001 * 109.47148 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47678 * 300.00514 * 12 11 10 40 40 H 1.08995 * 109.47385 * 59.99813 * 13 11 10 41 41 H 1.09001 * 109.47570 * 180.02562 * 13 11 10 42 42 H 1.09007 * 109.47170 * 299.99370 * 13 11 10 43 43 H 1.09002 * 109.47072 * 59.99488 * 14 11 10 44 44 H 1.09004 * 109.47215 * 180.02562 * 14 11 10 45 45 H 1.09008 * 109.46695 * 299.99778 * 14 11 10 46 46 H 1.09005 * 113.28033 * 346.93821 * 17 3 2 47 47 H 1.09010 * 113.46434 * 332.73738 * 18 17 3 48 48 H 1.09004 * 113.46780 * 202.30660 * 18 17 3 49 49 H 0.96996 * 119.99626 * 353.49769 * 23 22 20 50 50 H 1.09008 * 113.46051 * 87.44172 * 28 19 18 51 51 H 1.09000 * 113.46623 * 217.87331 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3388 1.9828 1.1628 5 8 2.6404 3.1612 1.1750 6 6 2.3240 1.2143 2.4167 7 6 1.1186 0.8047 2.9830 8 6 1.1441 0.0770 4.1726 9 6 2.3294 -0.2234 4.7624 10 7 3.5049 0.1714 4.2176 11 6 4.7615 -0.1746 4.8865 12 6 4.4602 -0.9700 6.1582 13 6 5.6230 -1.0209 3.9472 14 6 5.5136 1.1065 5.2528 15 6 3.5371 0.8717 3.0679 16 8 4.6051 1.2137 2.5903 17 6 2.1582 2.1088 -1.2639 18 6 1.3105 3.3852 -1.3526 19 7 2.4254 4.1075 -0.7217 20 6 2.5612 5.2266 0.0555 21 1 1.6839 5.7420 0.4180 22 6 3.8261 5.6988 0.3776 23 7 3.9723 6.5879 1.3370 24 14 5.3212 5.0722 -0.5508 25 1 5.8648 3.8739 0.1375 26 1 4.9280 4.7113 -1.9365 27 1 6.3593 6.1333 -0.5912 28 6 3.3311 3.1023 -1.2982 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1793 1.0461 2.5079 35 1 0.2191 -0.2480 4.6255 36 1 2.3352 -0.7879 5.6832 37 1 3.9242 -1.8826 5.8975 38 1 5.3952 -1.2278 6.6556 39 1 3.8465 -0.3668 6.8273 40 1 5.8376 -0.4540 3.0414 41 1 6.5578 -1.2787 4.4450 42 1 5.0872 -1.9336 3.6863 43 1 4.8998 1.7095 5.9220 44 1 6.4489 0.8492 5.7501 45 1 5.7283 1.6735 4.3469 46 1 2.0904 1.4653 -2.1412 47 1 0.4110 3.3525 -0.7376 48 1 1.1107 3.7034 -2.3758 49 1 3.1913 6.9834 1.7547 50 1 3.6641 3.3461 -2.3072 51 1 4.1533 2.8288 -0.6370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952425226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:26 Heat of formation + Delta-G solvation = 54.207816 kcal Electronic energy + Delta-G solvation = -33750.134629 eV Core-core repulsion = 29653.638476 eV Total energy + Delta-G solvation = -4096.496153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80973 -41.44946 -38.75226 -38.07843 -37.22505 -36.42515 -34.30589 -33.07815 -31.22742 -31.06131 -29.41347 -28.65962 -28.44426 -26.87596 -25.83973 -25.13784 -24.18263 -23.73411 -22.13706 -21.35404 -19.79858 -19.20836 -18.57864 -18.11981 -17.97546 -17.23455 -16.93998 -16.77385 -16.26471 -15.93945 -15.82851 -15.57540 -15.35263 -15.21490 -15.15151 -14.87363 -14.64336 -14.39539 -13.72390 -13.63816 -13.38828 -13.29112 -13.22696 -13.13805 -13.05334 -13.00450 -12.85039 -12.72898 -12.65013 -12.47637 -12.30785 -12.19073 -12.15756 -11.98895 -11.85709 -11.39236 -11.16342 -11.01026 -10.85154 -10.71607 -10.18259 -9.36176 -8.94238 -8.69094 -8.37681 -5.11836 -0.31612 0.91074 1.26691 1.41707 1.46673 1.55563 2.10293 2.20311 2.62570 2.64676 3.14879 3.41834 3.44968 3.60792 3.67607 3.75186 3.78471 3.87589 3.93717 4.03224 4.13041 4.34423 4.35367 4.42335 4.51706 4.53430 4.55826 4.60195 4.62334 4.66935 4.68230 4.74383 4.79019 4.81204 4.81960 4.92114 4.95152 5.05939 5.08011 5.12631 5.16390 5.22043 5.26867 5.29168 5.37452 5.45336 5.64292 5.99075 6.11178 6.12935 6.69281 6.89006 7.04269 7.60606 7.74612 8.51960 9.14992 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005090 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.843176 B = 5499.938381 C = 6897.961193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.530 3.470 5 O -0.483 6.483 6 C -0.293 4.293 7 C 0.030 3.970 8 C -0.232 4.232 9 C 0.148 3.852 10 N -0.480 5.480 11 C 0.140 3.860 12 C -0.154 4.154 13 C -0.158 4.158 14 C -0.166 4.166 15 C 0.516 3.484 16 O -0.586 6.586 17 C 0.130 3.870 18 C 0.108 3.892 19 N -0.624 5.624 20 C -0.199 4.199 21 H 0.030 0.970 22 C -0.089 4.089 23 N -0.996 5.996 24 Si 1.103 2.897 25 H -0.323 1.323 26 H -0.243 1.243 27 H -0.309 1.309 28 C 0.085 3.915 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.146 0.854 35 H 0.197 0.803 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.029 0.971 46 H 0.151 0.849 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.235 0.765 50 H 0.068 0.932 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -30.199 7.951 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.333 5.333 4 C 0.316 3.684 5 O -0.354 6.354 6 C -0.301 4.301 7 C 0.008 3.992 8 C -0.254 4.254 9 C 0.019 3.981 10 N -0.189 5.189 11 C 0.058 3.942 12 C -0.211 4.211 13 C -0.216 4.216 14 C -0.223 4.223 15 C 0.319 3.681 16 O -0.471 6.471 17 C 0.025 3.975 18 C -0.019 4.019 19 N -0.351 5.351 20 C -0.327 4.327 21 H 0.048 0.952 22 C -0.278 4.278 23 N -0.647 5.647 24 Si 0.934 3.066 25 H -0.253 1.253 26 H -0.167 1.167 27 H -0.238 1.238 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.214 0.786 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.049 0.951 46 H 0.168 0.832 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.044 0.956 50 H 0.086 0.914 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.206 -29.086 7.719 30.726 hybrid contribution -1.324 1.287 0.185 1.856 sum -7.530 -27.799 7.904 29.866 Atomic orbital electron populations 1.22233 0.94135 1.03463 1.02095 1.21716 0.95641 0.80388 1.03663 1.47630 1.66666 1.14757 1.04231 1.18546 0.78388 0.87318 0.84182 1.91516 1.43039 1.15263 1.85549 1.20994 0.94837 1.12393 1.01853 1.22198 0.96060 0.87420 0.93556 1.21082 0.99461 1.07136 0.97740 1.23165 0.83432 0.92915 0.98551 1.45812 1.09433 1.43317 1.20309 1.21262 0.82156 0.95997 0.94797 1.22314 1.05520 1.00189 0.93044 1.22164 1.00733 0.99080 0.99624 1.22222 1.01755 0.97109 1.01264 1.16932 0.89688 0.80044 0.81410 1.90896 1.33030 1.56674 1.66529 1.22571 0.95191 0.92498 0.87259 1.23005 0.92011 0.90289 0.96597 1.45675 1.05090 1.28207 1.56080 1.19352 0.92563 0.99749 1.21086 0.95226 1.26306 1.01338 1.00240 0.99952 1.70972 1.30255 1.36705 1.26736 0.83289 0.73645 0.72882 0.76754 1.25305 1.16705 1.23764 1.23186 0.95180 0.89417 0.96348 0.92304 0.88709 0.93472 0.88666 0.91021 0.83622 0.78585 0.76212 0.88471 0.88234 0.89810 0.94379 0.88766 0.90668 0.92554 0.88387 0.95129 0.83155 0.94987 0.91128 0.95608 0.91431 0.96758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.11 71.98 0.73 -1.97 16 2 C 0.11 2.44 5.76 86.38 0.50 2.93 16 3 N -0.60 -21.44 2.74 -800.88 -2.20 -23.64 16 4 C 0.53 24.60 6.18 86.56 0.53 25.13 16 5 O -0.48 -29.66 10.47 -4.18 -0.04 -29.70 16 6 C -0.29 -11.03 4.14 -19.79 -0.08 -11.11 16 7 C 0.03 0.75 8.50 22.83 0.19 0.94 16 8 C -0.23 -3.34 9.99 21.99 0.22 -3.12 16 9 C 0.15 2.10 9.58 83.56 0.80 2.90 16 10 N -0.48 -12.04 2.53 -605.55 -1.53 -13.58 16 11 C 0.14 2.89 1.02 3.60 0.00 2.89 16 12 C -0.15 -1.18 7.09 71.98 0.51 -0.67 16 13 C -0.16 -3.45 8.39 71.98 0.60 -2.84 16 14 C -0.17 -4.57 8.40 71.98 0.60 -3.97 16 15 C 0.52 20.14 6.84 85.16 0.58 20.72 16 16 O -0.59 -29.72 12.67 -4.95 -0.06 -29.78 16 17 C 0.13 4.69 4.91 45.55 0.22 4.92 16 18 C 0.11 4.48 8.21 83.17 0.68 5.16 16 19 N -0.62 -34.90 1.97 -738.10 -1.45 -36.35 16 20 C -0.20 -13.54 8.62 84.03 0.72 -12.81 16 21 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 22 C -0.09 -6.40 5.22 84.86 0.44 -5.96 16 23 N -1.00 -76.13 13.70 21.65 0.30 -75.84 16 24 Si 1.10 67.72 25.46 68.60 1.75 69.47 16 25 H -0.32 -21.11 6.98 99.48 0.69 -20.42 16 26 H -0.24 -12.83 5.55 99.48 0.55 -12.27 16 27 H -0.31 -18.73 7.11 99.48 0.71 -18.03 16 28 C 0.08 4.11 4.56 83.26 0.38 4.49 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.87 5.70 -2.39 -0.01 0.86 16 32 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 33 H 0.07 1.65 6.25 -2.39 -0.01 1.63 16 34 H 0.15 3.18 5.97 -2.91 -0.02 3.16 16 35 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.22 0.60 5.55 -2.91 -0.02 0.59 16 37 H 0.10 0.25 7.41 -2.38 -0.02 0.23 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.46 7.41 -2.39 -0.02 0.44 16 40 H 0.04 1.24 6.10 -2.39 -0.01 1.23 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.22 6.14 -2.38 -0.01 1.20 16 46 H 0.15 3.67 8.04 -2.38 -0.02 3.65 16 47 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.23 17.99 8.74 -92.71 -0.81 17.18 16 50 H 0.07 2.97 7.06 -2.38 -0.02 2.96 16 51 H 0.01 0.82 5.40 -2.39 -0.01 0.80 16 Total: -1.00 -116.28 383.90 5.13 -111.15 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 0.73 Total: 0.63 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 7.65 Total: 27.64 kcal Atomic # 7 Polarization: -144.52 SS G_CDS: -4.89 Total: -149.41 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -0.11 Total: -59.48 kcal Atomic # 14 Polarization: 67.72 SS G_CDS: 1.75 Total: 69.47 kcal Total: -116.28 5.13 -111.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952425226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.356 kcal (2) G-P(sol) polarization free energy of solvation -116.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds