Wall clock time and date at job start Wed Apr 1 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47210 * 2 1 4 4 C 1.36441 * 124.85084 * 265.03264 * 3 2 1 5 5 C 1.34485 * 108.85650 * 179.73143 * 4 3 2 6 6 C 1.46696 * 106.33324 * 359.97438 * 5 4 3 7 7 C 1.47263 * 126.94549 * 180.02562 * 6 5 4 8 8 O 1.21619 * 119.99881 * 174.36718 * 7 6 5 9 9 N 1.34774 * 119.99599 * 354.37327 * 7 6 5 10 10 C 1.47488 * 125.65785 * 185.04436 * 9 7 6 11 11 C 1.55029 * 104.90067 * 204.01896 * 10 9 7 12 12 C 1.54518 * 101.51714 * 323.62460 * 11 10 9 13 13 C 1.47187 * 125.66742 * 4.73346 * 9 7 6 14 14 C 1.52514 * 110.05686 * 153.09952 * 12 11 10 15 15 N 1.47309 * 108.38324 * 72.02399 * 14 12 11 16 16 C 1.36935 * 121.05815 * 229.39804 * 15 14 12 17 17 H 1.07995 * 120.00049 * 150.13184 * 16 15 14 18 18 C 1.38817 * 119.99985 * 330.13179 * 16 15 14 19 19 N 1.31624 * 119.99552 * 350.33436 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 170.34210 * 18 16 15 21 21 H 1.48495 * 109.47412 * 89.99648 * 20 18 16 22 22 H 1.48503 * 109.46670 * 209.99759 * 20 18 16 23 23 H 1.48493 * 109.46999 * 329.99350 * 20 18 16 24 24 C 1.47160 * 117.88102 * 49.41181 * 15 14 12 25 25 C 1.53276 * 108.54664 * 308.88945 * 24 15 14 26 26 O 1.42075 * 110.33558 * 276.04908 * 12 11 10 27 27 C 1.34660 * 124.84690 * 84.71864 * 3 2 1 28 28 C 1.50704 * 125.80122 * 0.27433 * 27 3 2 29 29 H 1.09000 * 109.46476 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46913 * 299.99397 * 1 2 3 31 31 H 1.08999 * 109.47300 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47374 * 240.00424 * 2 1 3 33 33 H 1.09004 * 109.47724 * 120.00009 * 2 1 3 34 34 H 1.07996 * 125.57214 * 359.72682 * 4 3 2 35 35 H 1.08001 * 126.83746 * 179.97438 * 5 4 3 36 36 H 1.08995 * 110.35784 * 322.87619 * 10 9 7 37 37 H 1.09008 * 110.35250 * 85.16579 * 10 9 7 38 38 H 1.09003 * 111.01032 * 81.68181 * 11 10 9 39 39 H 1.08995 * 111.01559 * 205.52891 * 11 10 9 40 40 H 1.09003 * 109.90710 * 297.85654 * 13 9 7 41 41 H 1.08998 * 109.91106 * 59.12284 * 13 9 7 42 42 H 1.09005 * 109.68494 * 191.74674 * 14 12 11 43 43 H 1.08999 * 109.68148 * 312.26083 * 14 12 11 44 44 H 0.97001 * 119.99318 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.62499 * 68.61146 * 24 15 14 46 46 H 1.09007 * 109.62181 * 188.98109 * 24 15 14 47 47 H 1.08997 * 109.51650 * 172.80041 * 25 24 15 48 48 H 1.09002 * 109.51400 * 292.95406 * 25 24 15 49 49 H 1.09000 * 109.46840 * 89.99851 * 28 27 3 50 50 H 1.09002 * 109.46945 * 209.99215 * 28 27 3 51 51 H 1.08994 * 109.46957 * 329.99450 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3697 2.0841 -1.1155 5 6 2.7648 3.3156 -0.7468 6 6 2.6436 3.3676 0.7142 7 6 2.9588 4.5100 1.5884 8 8 2.7146 4.4506 2.7783 9 7 3.5176 5.6213 1.0696 10 6 3.9793 6.7914 1.8398 11 6 3.9428 7.9704 0.8339 12 6 4.3804 7.2737 -0.4741 13 6 3.7745 5.8662 -0.3588 14 6 3.8047 8.0122 -1.6780 15 7 4.5238 9.2892 -1.8270 16 6 3.8450 10.4686 -1.9790 17 1 4.2767 11.3905 -1.6182 18 6 2.6018 10.4794 -2.5967 19 7 2.1594 9.3987 -3.2038 20 14 1.5572 12.0277 -2.5663 21 1 1.8768 12.8638 -3.7511 22 1 0.1198 11.6556 -2.5962 23 1 1.8443 12.7943 -1.3274 24 6 5.9949 9.2568 -1.8078 25 6 6.4493 8.4784 -0.5681 26 8 5.7976 7.2046 -0.5464 27 6 2.1789 2.1406 1.1004 28 6 1.8946 1.7115 2.5168 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3360 1.7121 -2.1288 35 1 3.1038 4.1085 -1.3970 36 1 3.3065 6.9848 2.6752 37 1 4.9957 6.6313 2.1997 38 1 2.9349 8.3754 0.7428 39 1 4.6505 8.7490 1.1184 40 1 4.4759 5.1251 -0.7422 41 1 2.8396 5.8199 -0.9173 42 1 3.9372 7.4092 -2.5763 43 1 2.7438 8.2041 -1.5179 44 1 1.2909 9.4063 -3.6358 45 1 6.3620 8.7609 -2.7064 46 1 6.3829 10.2747 -1.7671 47 1 7.5291 8.3343 -0.6042 48 1 6.1858 9.0375 0.3297 49 1 2.7924 1.2706 2.9500 50 1 1.5949 2.5783 3.1059 51 1 1.0908 0.9753 2.5190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972515198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:08 Heat of formation + Delta-G solvation = 8.939177 kcal Electronic energy + Delta-G solvation = -32127.722196 eV Core-core repulsion = 28029.263047 eV Total energy + Delta-G solvation = -4098.459148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43414 -39.89483 -38.31018 -35.90165 -34.42365 -34.26382 -31.62786 -31.36343 -31.16489 -30.16706 -28.84985 -27.36040 -26.48565 -25.46616 -24.21660 -23.40461 -22.72168 -21.40872 -21.02289 -19.95558 -18.64989 -18.26908 -17.19062 -16.96969 -16.17288 -15.94013 -15.41502 -15.31486 -14.87215 -14.68840 -14.44181 -14.27112 -14.11609 -13.61309 -13.55019 -13.31280 -13.21287 -13.06489 -12.84520 -12.69218 -12.63670 -12.42970 -12.32598 -12.03192 -11.96290 -11.93688 -11.63944 -11.45013 -11.22925 -10.94891 -10.84315 -10.80064 -10.62627 -10.26974 -10.18326 -9.97401 -9.55943 -9.48165 -8.96132 -8.58550 -8.54512 -8.33902 -7.99466 -6.68166 -5.84283 -3.32150 1.85664 2.51096 2.70771 3.33990 3.41330 3.42458 3.45278 3.79728 4.28555 4.33777 4.42732 4.61573 4.67181 4.84216 4.89124 4.97089 5.03915 5.17234 5.22860 5.27254 5.35596 5.42840 5.49325 5.54158 5.55658 5.64979 5.71844 5.73419 5.85039 5.89996 5.92796 5.97348 6.00023 6.01065 6.12632 6.21210 6.26866 6.40556 6.46219 6.59011 6.68157 6.69248 6.81948 6.84857 7.09858 7.11871 7.24903 7.48075 7.71430 7.94033 7.97109 8.35867 8.61103 9.12217 9.73294 10.32486 11.23704 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003002 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.507583 B = 9323.413732 C =10054.526764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.443 5.443 4 C -0.022 4.022 5 C -0.169 4.169 6 C -0.229 4.229 7 C 0.607 3.393 8 O -0.563 6.563 9 N -0.608 5.608 10 C 0.111 3.889 11 C -0.144 4.144 12 C 0.082 3.918 13 C 0.120 3.880 14 C 0.166 3.834 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.905 5.905 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.377 6.377 27 C 0.101 3.899 28 C -0.093 4.093 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.029 0.971 43 H 0.098 0.902 44 H 0.255 0.745 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -17.615 6.035 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.120 5.120 4 C -0.148 4.148 5 C -0.193 4.193 6 C -0.239 4.239 7 C 0.399 3.601 8 O -0.444 6.444 9 N -0.340 5.340 10 C -0.011 4.011 11 C -0.182 4.182 12 C 0.041 3.959 13 C -0.004 4.004 14 C 0.039 3.961 15 N -0.316 5.316 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.296 6.296 27 C -0.015 4.015 28 C -0.151 4.151 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.116 0.884 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.120 0.880 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.132 -18.216 6.545 19.357 hybrid contribution -0.616 1.060 -0.414 1.294 sum -0.484 -17.157 6.131 18.226 Atomic orbital electron populations 1.22193 0.94307 1.02927 1.03530 1.21852 0.95613 0.80664 1.04317 1.43722 1.50678 1.11707 1.05934 1.21725 1.08506 0.93387 0.91141 1.22642 1.05641 0.97362 0.93619 1.20054 1.15723 0.94477 0.93621 1.16952 0.76206 0.80610 0.86325 1.90679 1.55522 1.82092 1.16106 1.48264 1.60546 1.16877 1.08327 1.22236 0.99098 0.84672 0.95095 1.23188 1.03491 0.96652 0.94896 1.22741 0.81982 0.93806 0.97415 1.22163 1.00178 0.96156 0.81864 1.21204 0.98010 0.85614 0.91245 1.44007 0.98882 1.03825 1.84914 1.19134 1.00819 0.86336 1.31856 0.91598 1.25149 0.99758 0.97244 0.97168 1.69944 1.19910 1.27595 1.37453 0.86262 0.79673 0.82706 0.77929 1.21330 1.21511 1.20426 1.21597 0.86827 0.98320 0.94949 1.23092 0.95789 0.85351 0.98973 1.87671 1.18232 1.28905 1.94809 1.20203 1.01426 0.90626 0.89287 1.20563 1.01443 1.03217 0.89843 0.90775 0.91701 0.91616 0.88996 0.89405 0.81722 0.82540 0.90875 0.91878 0.89672 0.89558 0.90322 0.89526 0.95340 0.88439 0.93464 0.95616 0.91986 0.90026 0.93420 0.90889 0.87969 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.10 0.65 6.21 -4.04 -0.03 0.62 16 3 N -0.44 -4.78 2.69 -112.52 -0.30 -5.08 16 4 C -0.02 -0.25 11.33 -16.83 -0.19 -0.44 16 5 C -0.17 -2.37 9.40 -37.49 -0.35 -2.73 16 6 C -0.23 -3.62 6.22 -103.35 -0.64 -4.27 16 7 C 0.61 11.02 7.83 -12.59 -0.10 10.92 16 8 O -0.56 -11.17 15.02 5.26 0.08 -11.09 16 9 N -0.61 -10.74 3.33 -171.99 -0.57 -11.32 16 10 C 0.11 1.90 6.93 -2.43 -0.02 1.88 16 11 C -0.14 -2.61 5.91 -24.86 -0.15 -2.76 16 12 C 0.08 1.57 0.83 -89.72 -0.07 1.49 16 13 C 0.12 2.06 4.37 -3.32 -0.01 2.05 16 14 C 0.17 3.78 3.89 -3.85 -0.01 3.77 16 15 N -0.59 -14.27 2.93 -172.17 -0.51 -14.77 16 16 C -0.25 -6.63 9.65 -15.06 -0.15 -6.77 16 17 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 18 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 19 N -0.90 -25.22 11.00 55.49 0.61 -24.61 16 20 Si 0.90 21.16 29.56 -169.99 -5.03 16.14 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 2.23 6.72 -3.54 -0.02 2.20 16 25 C 0.05 0.80 6.76 37.30 0.25 1.05 16 26 O -0.38 -7.19 10.21 -35.23 -0.36 -7.55 16 27 C 0.10 1.34 6.89 -81.88 -0.56 0.78 16 28 C -0.09 -1.05 9.38 36.01 0.34 -0.71 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.09 0.49 7.74 -51.93 -0.40 0.09 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.16 2.17 4.83 -52.49 -0.25 1.92 16 36 H 0.07 1.23 7.99 -51.93 -0.42 0.82 16 37 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.08 1.66 7.86 -51.93 -0.41 1.25 16 39 H 0.09 1.54 5.98 -51.93 -0.31 1.23 16 40 H 0.08 1.31 6.87 -51.93 -0.36 0.95 16 41 H 0.09 1.49 6.58 -51.93 -0.34 1.15 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 2.48 6.05 -51.93 -0.31 2.16 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 0.82 6.13 -51.93 -0.32 0.50 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.10 1.38 6.36 -51.93 -0.33 1.05 16 51 H 0.06 0.51 7.04 -51.93 -0.37 0.14 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -32.06 391.96 -9.57 -41.63 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.97 Total: 4.26 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.43 Total: 6.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.77 Total: -55.78 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.06 -9.57 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972515198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.574 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds