Wall clock time and date at job start Wed Apr 1 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47210 * 2 1 4 4 C 1.36441 * 124.85084 * 265.03264 * 3 2 1 5 5 C 1.34485 * 108.85650 * 179.73143 * 4 3 2 6 6 C 1.46696 * 106.33324 * 359.97438 * 5 4 3 7 7 C 1.47263 * 126.94549 * 180.02562 * 6 5 4 8 8 O 1.21619 * 119.99881 * 174.36718 * 7 6 5 9 9 N 1.34774 * 119.99599 * 354.37327 * 7 6 5 10 10 C 1.47488 * 125.65785 * 185.04436 * 9 7 6 11 11 C 1.55029 * 104.90067 * 204.01896 * 10 9 7 12 12 C 1.54518 * 101.51714 * 323.62460 * 11 10 9 13 13 C 1.47187 * 125.66742 * 4.73346 * 9 7 6 14 14 C 1.52514 * 110.05686 * 153.09952 * 12 11 10 15 15 N 1.47309 * 108.38324 * 72.02399 * 14 12 11 16 16 C 1.36935 * 121.05815 * 229.39804 * 15 14 12 17 17 H 1.07995 * 120.00049 * 150.13184 * 16 15 14 18 18 C 1.38817 * 119.99985 * 330.13179 * 16 15 14 19 19 N 1.31624 * 119.99552 * 350.33436 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 170.34210 * 18 16 15 21 21 H 1.48495 * 109.47412 * 89.99648 * 20 18 16 22 22 H 1.48503 * 109.46670 * 209.99759 * 20 18 16 23 23 H 1.48493 * 109.46999 * 329.99350 * 20 18 16 24 24 C 1.47160 * 117.88102 * 49.41181 * 15 14 12 25 25 C 1.53276 * 108.54664 * 308.88945 * 24 15 14 26 26 O 1.42075 * 110.33558 * 276.04908 * 12 11 10 27 27 C 1.34660 * 124.84690 * 84.71864 * 3 2 1 28 28 C 1.50704 * 125.80122 * 0.27433 * 27 3 2 29 29 H 1.09000 * 109.46476 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46913 * 299.99397 * 1 2 3 31 31 H 1.08999 * 109.47300 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47374 * 240.00424 * 2 1 3 33 33 H 1.09004 * 109.47724 * 120.00009 * 2 1 3 34 34 H 1.07996 * 125.57214 * 359.72682 * 4 3 2 35 35 H 1.08001 * 126.83746 * 179.97438 * 5 4 3 36 36 H 1.08995 * 110.35784 * 322.87619 * 10 9 7 37 37 H 1.09008 * 110.35250 * 85.16579 * 10 9 7 38 38 H 1.09003 * 111.01032 * 81.68181 * 11 10 9 39 39 H 1.08995 * 111.01559 * 205.52891 * 11 10 9 40 40 H 1.09003 * 109.90710 * 297.85654 * 13 9 7 41 41 H 1.08998 * 109.91106 * 59.12284 * 13 9 7 42 42 H 1.09005 * 109.68494 * 191.74674 * 14 12 11 43 43 H 1.08999 * 109.68148 * 312.26083 * 14 12 11 44 44 H 0.97001 * 119.99318 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.62499 * 68.61146 * 24 15 14 46 46 H 1.09007 * 109.62181 * 188.98109 * 24 15 14 47 47 H 1.08997 * 109.51650 * 172.80041 * 25 24 15 48 48 H 1.09002 * 109.51400 * 292.95406 * 25 24 15 49 49 H 1.09000 * 109.46840 * 89.99851 * 28 27 3 50 50 H 1.09002 * 109.46945 * 209.99215 * 28 27 3 51 51 H 1.08994 * 109.46957 * 329.99450 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3697 2.0841 -1.1155 5 6 2.7648 3.3156 -0.7468 6 6 2.6436 3.3676 0.7142 7 6 2.9588 4.5100 1.5884 8 8 2.7146 4.4506 2.7783 9 7 3.5176 5.6213 1.0696 10 6 3.9793 6.7914 1.8398 11 6 3.9428 7.9704 0.8339 12 6 4.3804 7.2737 -0.4741 13 6 3.7745 5.8662 -0.3588 14 6 3.8047 8.0122 -1.6780 15 7 4.5238 9.2892 -1.8270 16 6 3.8450 10.4686 -1.9790 17 1 4.2767 11.3905 -1.6182 18 6 2.6018 10.4794 -2.5967 19 7 2.1594 9.3987 -3.2038 20 14 1.5572 12.0277 -2.5663 21 1 1.8768 12.8638 -3.7511 22 1 0.1198 11.6556 -2.5962 23 1 1.8443 12.7943 -1.3274 24 6 5.9949 9.2568 -1.8078 25 6 6.4493 8.4784 -0.5681 26 8 5.7976 7.2046 -0.5464 27 6 2.1789 2.1406 1.1004 28 6 1.8946 1.7115 2.5168 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3360 1.7121 -2.1288 35 1 3.1038 4.1085 -1.3970 36 1 3.3065 6.9848 2.6752 37 1 4.9957 6.6313 2.1997 38 1 2.9349 8.3754 0.7428 39 1 4.6505 8.7490 1.1184 40 1 4.4759 5.1251 -0.7422 41 1 2.8396 5.8199 -0.9173 42 1 3.9372 7.4092 -2.5763 43 1 2.7438 8.2041 -1.5179 44 1 1.2909 9.4063 -3.6358 45 1 6.3620 8.7609 -2.7064 46 1 6.3829 10.2747 -1.7671 47 1 7.5291 8.3343 -0.6042 48 1 6.1858 9.0375 0.3297 49 1 2.7924 1.2706 2.9500 50 1 1.5949 2.5783 3.1059 51 1 1.0908 0.9753 2.5190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972515198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:07 Heat of formation + Delta-G solvation = -9.806005 kcal Electronic energy + Delta-G solvation = -32128.535048 eV Core-core repulsion = 28029.263047 eV Total energy + Delta-G solvation = -4099.272000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41487 -41.36039 -39.75299 -37.41664 -36.21846 -34.99855 -33.21942 -32.77559 -32.49715 -31.47310 -29.87808 -29.03254 -27.69217 -27.01129 -25.40458 -24.79519 -23.89932 -23.04337 -22.19630 -21.08039 -20.24020 -19.39468 -18.89044 -18.11256 -17.64659 -17.32551 -16.80637 -16.39911 -16.23352 -16.04684 -15.93000 -15.70477 -15.29817 -15.18972 -14.93036 -14.52818 -14.45009 -14.24438 -14.10720 -13.89261 -13.79036 -13.67383 -13.47650 -13.33295 -13.07401 -13.02708 -12.76161 -12.69925 -12.53631 -12.44047 -12.40708 -12.28300 -12.14027 -12.08995 -11.81948 -11.76894 -11.12120 -10.94247 -10.68328 -10.45685 -9.75580 -9.50976 -9.05403 -8.63307 -7.86810 -5.37655 0.73508 1.47021 1.48836 1.52034 1.57128 1.82404 2.17618 2.48747 2.52046 2.80891 3.27561 3.43249 3.51906 3.81941 3.84020 3.86921 3.97625 4.03648 4.13767 4.15983 4.25014 4.32877 4.35915 4.41156 4.42382 4.51167 4.55039 4.59172 4.69142 4.70456 4.72155 4.82742 4.83643 4.89249 4.93018 4.96145 5.04383 5.08480 5.12176 5.14277 5.22798 5.27800 5.29659 5.35165 5.57215 5.64105 5.80633 6.14117 6.34573 6.40294 6.42888 6.56681 7.11330 7.24071 7.78126 8.34044 9.18670 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003002 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.507583 B = 9323.413732 C =10054.526764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.435 5.435 4 C -0.007 4.007 5 C -0.197 4.197 6 C -0.271 4.271 7 C 0.600 3.400 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.117 3.883 11 C -0.135 4.135 12 C 0.091 3.909 13 C 0.133 3.867 14 C 0.179 3.821 15 N -0.610 5.610 16 C -0.259 4.259 17 H 0.070 0.930 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.105 3.895 25 C 0.051 3.949 26 O -0.380 6.380 27 C 0.103 3.897 28 C -0.089 4.089 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.199 0.801 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.002 0.998 43 H 0.067 0.933 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -19.429 6.433 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.031 4.031 3 N -0.111 5.111 4 C -0.133 4.133 5 C -0.220 4.220 6 C -0.281 4.281 7 C 0.394 3.606 8 O -0.472 6.472 9 N -0.345 5.345 10 C -0.005 4.005 11 C -0.173 4.173 12 C 0.049 3.951 13 C 0.010 3.990 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.388 4.388 17 H 0.088 0.912 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.195 1.195 24 C -0.021 4.021 25 C -0.026 4.026 26 O -0.299 6.299 27 C -0.016 4.016 28 C -0.146 4.146 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.216 0.784 35 H 0.166 0.834 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.020 0.980 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.137 0.863 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.728 -20.042 6.942 21.223 hybrid contribution -0.769 1.563 -0.585 1.838 sum -0.041 -18.479 6.357 19.542 Atomic orbital electron populations 1.22176 0.93792 1.04254 1.02389 1.22258 0.95960 0.78353 1.06482 1.44032 1.49189 1.12969 1.04878 1.22182 1.06145 0.92421 0.92581 1.22647 1.07714 0.98735 0.92922 1.20110 1.18641 0.94982 0.94332 1.17410 0.75665 0.81118 0.86436 1.90648 1.56725 1.82648 1.17176 1.48323 1.60736 1.17120 1.08292 1.22193 0.99651 0.84036 0.94644 1.23053 1.02452 0.97135 0.94698 1.22456 0.82218 0.94423 0.95973 1.21990 0.99938 0.95195 0.81881 1.20895 0.96609 0.85439 0.91805 1.44259 1.00607 1.03473 1.85084 1.19449 1.01097 0.87274 1.31030 0.91214 1.25851 1.01031 0.99804 0.97443 1.70105 1.19933 1.29298 1.38604 0.85307 0.77645 0.79631 0.78062 1.21173 1.22139 1.19451 1.21782 0.84586 0.99531 0.96174 1.23183 0.97582 0.84361 0.97522 1.87682 1.17715 1.29871 1.94665 1.20460 1.00151 0.90232 0.90732 1.20542 1.02888 1.02874 0.88313 0.88216 0.92970 0.92631 0.86482 0.87720 0.78416 0.83362 0.90857 0.90862 0.91566 0.88927 0.89542 0.90124 0.97966 0.91484 0.94053 0.96358 0.90935 0.86293 0.92683 0.89909 0.90567 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 71.98 0.74 -0.82 16 2 C 0.09 0.87 6.21 86.38 0.54 1.41 16 3 N -0.43 -8.40 2.69 -509.90 -1.37 -9.77 16 4 C -0.01 -0.15 11.33 83.12 0.94 0.79 16 5 C -0.20 -5.53 9.40 23.62 0.22 -5.31 16 6 C -0.27 -8.66 6.22 -19.04 -0.12 -8.78 16 7 C 0.60 22.34 7.83 86.62 0.68 23.02 16 8 O -0.59 -24.00 15.02 -4.09 -0.06 -24.06 16 9 N -0.61 -22.13 3.33 -816.30 -2.72 -24.85 16 10 C 0.12 4.00 6.93 86.89 0.60 4.61 16 11 C -0.14 -4.95 5.91 31.81 0.19 -4.77 16 12 C 0.09 3.52 0.83 -10.21 -0.01 3.51 16 13 C 0.13 4.73 4.37 86.47 0.38 5.10 16 14 C 0.18 8.49 3.89 86.06 0.33 8.82 16 15 N -0.61 -29.77 2.93 -698.64 -2.05 -31.82 16 16 C -0.26 -13.73 9.65 84.03 0.81 -12.92 16 17 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 18 C -0.05 -2.48 5.10 84.86 0.43 -2.05 16 19 N -0.93 -53.79 11.00 21.65 0.24 -53.55 16 20 Si 0.97 44.14 29.56 68.60 2.03 46.17 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.10 4.18 6.72 86.35 0.58 4.76 16 25 C 0.05 1.68 6.76 72.07 0.49 2.16 16 26 O -0.38 -14.12 10.21 -148.98 -1.52 -15.64 16 27 C 0.10 2.64 6.89 41.78 0.29 2.93 16 28 C -0.09 -1.89 9.38 71.24 0.67 -1.22 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.63 7.51 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.63 8.11 -2.39 -0.02 0.61 16 33 H 0.10 0.73 7.74 -2.38 -0.02 0.72 16 34 H 0.20 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.15 4.27 4.83 -2.91 -0.01 4.25 16 36 H 0.07 2.50 7.99 -2.39 -0.02 2.48 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.67 7.86 -2.39 -0.02 2.65 16 39 H 0.09 3.25 5.98 -2.39 -0.01 3.24 16 40 H 0.09 2.93 6.87 -2.39 -0.02 2.92 16 41 H 0.08 2.95 6.58 -2.39 -0.02 2.93 16 42 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 43 H 0.07 3.59 6.05 -2.39 -0.01 3.57 16 44 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 2.71 7.96 -2.38 -0.02 2.69 16 47 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.06 1.77 6.13 -2.39 -0.01 1.75 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.08 2.07 6.36 -2.39 -0.02 2.05 16 51 H 0.09 1.32 7.04 -2.39 -0.02 1.30 16 Total: -1.00 -71.51 391.96 3.24 -68.27 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.93 Total: 24.00 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.76 Total: 21.24 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.90 Total: -119.98 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.58 Total: -39.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.51 3.24 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972515198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.467 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds