Wall clock time and date at job start Wed Apr 1 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47545 * 2 1 4 4 C 1.36451 * 124.84784 * 265.03048 * 3 2 1 5 5 C 1.34492 * 108.85230 * 179.68465 * 4 3 2 6 6 C 1.46688 * 106.33194 * 0.43269 * 5 4 3 7 7 C 1.47257 * 126.94152 * 179.83039 * 6 5 4 8 8 O 1.21624 * 120.00081 * 185.78280 * 7 6 5 9 9 N 1.34780 * 120.00200 * 5.78302 * 7 6 5 10 10 C 1.47485 * 125.66478 * 174.66570 * 9 7 6 11 11 C 1.55027 * 104.89968 * 156.25367 * 10 9 7 12 12 C 1.54500 * 101.53331 * 36.36360 * 11 10 9 13 13 C 1.47175 * 125.65828 * 354.97388 * 9 7 6 14 14 C 1.52515 * 110.09548 * 206.97111 * 12 11 10 15 15 N 1.47303 * 108.39669 * 186.95558 * 14 12 11 16 16 C 1.36939 * 121.06472 * 229.41982 * 15 14 12 17 17 H 1.08004 * 119.99630 * 152.66829 * 16 15 14 18 18 C 1.38814 * 120.00311 * 332.66448 * 16 15 14 19 19 N 1.31621 * 119.99674 * 344.05219 * 18 16 15 20 20 Si 1.86796 * 120.00182 * 164.05428 * 18 16 15 21 21 H 1.48504 * 109.47197 * 60.00070 * 20 18 16 22 22 H 1.48500 * 109.47149 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47099 * 300.00381 * 20 18 16 24 24 C 1.47161 * 117.86777 * 49.39894 * 15 14 12 25 25 C 1.53284 * 108.54890 * 308.86837 * 24 15 14 26 26 O 1.42058 * 110.38503 * 83.93142 * 12 11 10 27 27 C 1.34654 * 124.85245 * 84.99355 * 3 2 1 28 28 C 1.50700 * 125.80040 * 0.05189 * 27 3 2 29 29 H 1.09001 * 109.47169 * 59.99885 * 1 2 3 30 30 H 1.08993 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46929 * 300.00537 * 1 2 3 32 32 H 1.08999 * 109.47215 * 239.99931 * 2 1 3 33 33 H 1.09001 * 109.47169 * 120.00115 * 2 1 3 34 34 H 1.07999 * 125.57384 * 359.96544 * 4 3 2 35 35 H 1.08001 * 126.83129 * 180.26126 * 5 4 3 36 36 H 1.08997 * 110.35316 * 275.11422 * 10 9 7 37 37 H 1.09000 * 110.35496 * 37.40250 * 10 9 7 38 38 H 1.08994 * 111.01543 * 278.30038 * 11 10 9 39 39 H 1.08998 * 111.01064 * 154.41819 * 11 10 9 40 40 H 1.08998 * 109.91262 * 300.61506 * 13 9 7 41 41 H 1.08993 * 109.91141 * 61.88240 * 13 9 7 42 42 H 1.09003 * 109.68303 * 306.68032 * 14 12 11 43 43 H 1.09008 * 109.68107 * 67.19023 * 14 12 11 44 44 H 0.97000 * 119.99855 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.62682 * 68.58480 * 24 15 14 46 46 H 1.09000 * 109.62723 * 189.15284 * 24 15 14 47 47 H 1.09000 * 109.50961 * 172.81920 * 25 24 15 48 48 H 1.08993 * 109.51139 * 292.97062 * 25 24 15 49 49 H 1.09000 * 109.47037 * 269.99719 * 28 27 3 50 50 H 1.09005 * 109.47451 * 29.99691 * 28 27 3 51 51 H 1.09000 * 109.47428 * 149.99686 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0839 -1.1156 5 6 2.7640 3.3158 -0.7470 6 6 2.6527 3.3644 0.7148 7 6 2.9745 4.5045 1.5895 8 8 2.9355 4.3737 2.7981 9 7 3.3121 5.6929 1.0509 10 6 3.5488 6.9407 1.8007 11 6 4.4617 7.7915 0.8807 12 6 3.9067 7.4383 -0.5172 13 6 3.4996 5.9624 -0.3838 14 6 4.9983 7.5984 -1.5702 15 7 4.3915 7.4176 -2.9002 16 6 4.9491 6.5727 -3.8223 17 1 4.3276 6.1058 -4.5722 18 6 6.3130 6.3162 -3.7934 19 7 7.1157 7.1010 -3.1062 20 14 7.0092 4.8575 -4.7296 21 1 6.7026 5.0050 -6.1752 22 1 8.4809 4.8032 -4.5384 23 1 6.3976 3.6041 -4.2193 24 6 3.1665 8.1736 -3.2059 25 6 2.1579 7.9462 -2.0743 26 8 2.7796 8.2478 -0.8212 27 6 2.1841 2.1388 1.1008 28 6 1.9017 1.7091 2.5174 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3328 1.7132 -2.1293 35 1 3.0988 4.1102 -1.3976 36 1 2.6068 7.4578 1.9832 37 1 4.0537 6.7270 2.7428 38 1 5.5041 7.4878 0.9756 39 1 4.3453 8.8548 1.0901 40 1 4.2873 5.3227 -0.7818 41 1 2.5674 5.7847 -0.9198 42 1 5.4345 8.5948 -1.4982 43 1 5.7722 6.8468 -1.4139 44 1 8.0688 6.9217 -3.0857 45 1 3.4006 9.2356 -3.2796 46 1 2.7451 7.8226 -4.1479 47 1 1.2956 8.5971 -2.2189 48 1 1.8342 6.9054 -2.0789 49 1 0.8681 1.9462 2.7697 50 1 2.0610 0.6348 2.6098 51 1 2.5716 2.2356 3.1972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972515199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:12 Heat of formation + Delta-G solvation = 8.828541 kcal Electronic energy + Delta-G solvation = -32753.617351 eV Core-core repulsion = 28655.153405 eV Total energy + Delta-G solvation = -4098.463946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.35027 -39.90014 -38.25132 -35.86640 -34.44730 -34.19876 -31.75779 -31.45625 -31.20314 -29.84689 -28.61392 -27.54651 -26.42441 -25.49902 -24.14798 -23.25144 -23.00357 -21.28795 -20.95874 -19.70992 -18.98725 -18.06250 -17.03670 -16.93736 -16.31608 -15.96755 -15.42875 -15.20152 -14.85070 -14.55595 -14.35877 -14.34199 -14.03318 -13.69967 -13.47808 -13.27232 -13.18238 -13.03580 -12.90168 -12.78050 -12.72352 -12.35635 -12.18137 -11.97397 -11.82702 -11.66127 -11.50074 -11.38233 -11.28233 -11.04929 -10.93932 -10.76331 -10.72961 -10.43438 -10.31284 -9.91814 -9.56124 -9.43581 -8.98404 -8.55077 -8.48690 -8.26080 -7.91013 -6.74294 -5.86025 -3.30050 1.92737 2.62146 2.78756 3.33560 3.40079 3.40628 3.51586 3.86268 4.28136 4.39787 4.42601 4.66738 4.73209 4.87696 4.92214 5.02786 5.06153 5.25175 5.27521 5.28485 5.30783 5.39272 5.50018 5.52836 5.59300 5.70068 5.71531 5.78861 5.81100 5.88121 5.99443 6.03285 6.08136 6.12798 6.15077 6.21615 6.33594 6.37244 6.41053 6.49256 6.63930 6.76750 6.79002 6.95594 7.05390 7.21552 7.34139 7.44133 7.70208 7.93712 7.99630 8.31660 8.66165 9.09447 9.72309 10.30710 11.22352 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.004286 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.408172 B = 6530.977470 C = 8080.375453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.443 5.443 4 C -0.023 4.023 5 C -0.165 4.165 6 C -0.231 4.231 7 C 0.607 3.393 8 O -0.565 6.565 9 N -0.610 5.610 10 C 0.113 3.887 11 C -0.118 4.118 12 C 0.084 3.916 13 C 0.091 3.909 14 C 0.164 3.836 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.110 3.890 25 C 0.044 3.956 26 O -0.375 6.375 27 C 0.099 3.901 28 C -0.091 4.091 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.046 0.954 49 H 0.072 0.928 50 H 0.058 0.942 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -10.175 6.750 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.120 5.120 4 C -0.148 4.148 5 C -0.189 4.189 6 C -0.241 4.241 7 C 0.399 3.601 8 O -0.447 6.447 9 N -0.342 5.342 10 C -0.010 4.010 11 C -0.157 4.157 12 C 0.042 3.958 13 C -0.032 4.032 14 C 0.038 3.962 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.016 4.016 25 C -0.034 4.034 26 O -0.294 6.294 27 C -0.017 4.017 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.559 -10.520 7.475 17.325 hybrid contribution 0.517 -0.888 -1.094 1.501 sum -11.041 -11.407 6.381 17.110 Atomic orbital electron populations 1.22165 0.94363 1.02844 1.03383 1.21844 0.95543 0.80806 1.04317 1.43713 1.50659 1.11716 1.05933 1.21744 1.08668 0.93320 0.91096 1.22751 1.04980 0.97567 0.93584 1.20047 1.15822 0.94625 0.93601 1.16970 0.75828 0.80774 0.86501 1.90668 1.55860 1.83534 1.14632 1.48304 1.68625 1.08731 1.08548 1.22186 0.99151 0.84145 0.95500 1.22723 0.99400 1.00746 0.92802 1.22721 0.88757 0.88130 0.96208 1.22849 1.01823 0.97767 0.80720 1.21220 0.91794 1.01267 0.81905 1.44098 1.26984 1.49382 1.11352 1.19108 0.90244 1.18620 1.10499 0.91448 1.25039 0.95997 0.98721 0.99466 1.69991 1.03320 1.36519 1.44732 0.86402 0.77971 0.82884 0.79736 1.20870 1.21589 1.20839 1.21591 0.88709 0.95512 0.95831 1.23101 0.95512 0.99743 0.85070 1.87684 1.44640 1.59248 1.37781 1.20177 1.01686 0.90649 0.89203 1.20535 1.03377 1.00714 0.90196 0.91712 0.90822 0.91801 0.89019 0.89416 0.81746 0.82235 0.91594 0.90739 0.89184 0.89222 0.89673 0.90841 0.94915 0.88739 0.93407 0.95577 0.91944 0.89941 0.93534 0.90969 0.92271 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.10 0.76 6.45 -4.04 -0.03 0.73 16 3 N -0.44 -5.39 2.69 -112.52 -0.30 -5.69 16 4 C -0.02 -0.31 11.33 -16.82 -0.19 -0.50 16 5 C -0.17 -2.69 9.40 -37.50 -0.35 -3.04 16 6 C -0.23 -3.96 6.22 -103.35 -0.64 -4.61 16 7 C 0.61 11.47 7.83 -12.59 -0.10 11.37 16 8 O -0.57 -11.43 15.03 5.26 0.08 -11.35 16 9 N -0.61 -11.08 3.33 -172.01 -0.57 -11.65 16 10 C 0.11 1.85 6.93 -2.43 -0.02 1.83 16 11 C -0.12 -1.95 6.21 -24.87 -0.15 -2.10 16 12 C 0.08 1.59 0.81 -89.73 -0.07 1.51 16 13 C 0.09 1.69 4.07 -3.32 -0.01 1.67 16 14 C 0.16 3.73 3.96 -3.85 -0.02 3.72 16 15 N -0.59 -14.05 2.96 -172.17 -0.51 -14.56 16 16 C -0.26 -6.58 9.65 -15.06 -0.15 -6.72 16 17 H 0.07 1.69 7.88 -52.48 -0.41 1.28 16 18 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 19 N -0.90 -25.05 11.19 55.49 0.62 -24.43 16 20 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.11 2.21 6.72 -3.53 -0.02 2.18 16 25 C 0.04 0.76 6.76 37.30 0.25 1.01 16 26 O -0.37 -7.11 10.26 -35.23 -0.36 -7.47 16 27 C 0.10 1.43 6.89 -81.89 -0.56 0.87 16 28 C -0.09 -1.09 9.59 36.01 0.35 -0.74 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.09 0.58 7.05 -51.93 -0.37 0.22 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.16 2.76 4.83 -52.49 -0.25 2.51 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 38 H 0.09 1.47 8.01 -51.93 -0.42 1.05 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.73 6.44 -51.93 -0.33 1.40 16 41 H 0.07 1.37 4.78 -51.93 -0.25 1.12 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 2.37 6.01 -51.92 -0.31 2.06 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.05 0.81 6.22 -51.93 -0.32 0.48 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.54 7.02 -51.93 -0.36 0.18 16 51 H 0.10 1.43 6.36 -51.93 -0.33 1.09 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -31.55 392.69 -9.56 -41.11 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.97 Total: 5.81 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.43 Total: 6.52 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.76 Total: -56.34 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.28 Total: -18.83 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.55 -9.56 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972515199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.937 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds