Wall clock time and date at job start Wed Apr 1 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47545 * 2 1 4 4 C 1.36451 * 124.84784 * 265.03048 * 3 2 1 5 5 C 1.34492 * 108.85230 * 179.68465 * 4 3 2 6 6 C 1.46688 * 106.33194 * 0.43269 * 5 4 3 7 7 C 1.47257 * 126.94152 * 179.83039 * 6 5 4 8 8 O 1.21624 * 120.00081 * 185.78280 * 7 6 5 9 9 N 1.34780 * 120.00200 * 5.78302 * 7 6 5 10 10 C 1.47485 * 125.66478 * 174.66570 * 9 7 6 11 11 C 1.55027 * 104.89968 * 156.25367 * 10 9 7 12 12 C 1.54500 * 101.53331 * 36.36360 * 11 10 9 13 13 C 1.47175 * 125.65828 * 354.97388 * 9 7 6 14 14 C 1.52515 * 110.09548 * 206.97111 * 12 11 10 15 15 N 1.47303 * 108.39669 * 186.95558 * 14 12 11 16 16 C 1.36939 * 121.06472 * 229.41982 * 15 14 12 17 17 H 1.08004 * 119.99630 * 152.66829 * 16 15 14 18 18 C 1.38814 * 120.00311 * 332.66448 * 16 15 14 19 19 N 1.31621 * 119.99674 * 344.05219 * 18 16 15 20 20 Si 1.86796 * 120.00182 * 164.05428 * 18 16 15 21 21 H 1.48504 * 109.47197 * 60.00070 * 20 18 16 22 22 H 1.48500 * 109.47149 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47099 * 300.00381 * 20 18 16 24 24 C 1.47161 * 117.86777 * 49.39894 * 15 14 12 25 25 C 1.53284 * 108.54890 * 308.86837 * 24 15 14 26 26 O 1.42058 * 110.38503 * 83.93142 * 12 11 10 27 27 C 1.34654 * 124.85245 * 84.99355 * 3 2 1 28 28 C 1.50700 * 125.80040 * 0.05189 * 27 3 2 29 29 H 1.09001 * 109.47169 * 59.99885 * 1 2 3 30 30 H 1.08993 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46929 * 300.00537 * 1 2 3 32 32 H 1.08999 * 109.47215 * 239.99931 * 2 1 3 33 33 H 1.09001 * 109.47169 * 120.00115 * 2 1 3 34 34 H 1.07999 * 125.57384 * 359.96544 * 4 3 2 35 35 H 1.08001 * 126.83129 * 180.26126 * 5 4 3 36 36 H 1.08997 * 110.35316 * 275.11422 * 10 9 7 37 37 H 1.09000 * 110.35496 * 37.40250 * 10 9 7 38 38 H 1.08994 * 111.01543 * 278.30038 * 11 10 9 39 39 H 1.08998 * 111.01064 * 154.41819 * 11 10 9 40 40 H 1.08998 * 109.91262 * 300.61506 * 13 9 7 41 41 H 1.08993 * 109.91141 * 61.88240 * 13 9 7 42 42 H 1.09003 * 109.68303 * 306.68032 * 14 12 11 43 43 H 1.09008 * 109.68107 * 67.19023 * 14 12 11 44 44 H 0.97000 * 119.99855 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.62682 * 68.58480 * 24 15 14 46 46 H 1.09000 * 109.62723 * 189.15284 * 24 15 14 47 47 H 1.09000 * 109.50961 * 172.81920 * 25 24 15 48 48 H 1.08993 * 109.51139 * 292.97062 * 25 24 15 49 49 H 1.09000 * 109.47037 * 269.99719 * 28 27 3 50 50 H 1.09005 * 109.47451 * 29.99691 * 28 27 3 51 51 H 1.09000 * 109.47428 * 149.99686 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0839 -1.1156 5 6 2.7640 3.3158 -0.7470 6 6 2.6527 3.3644 0.7148 7 6 2.9745 4.5045 1.5895 8 8 2.9355 4.3737 2.7981 9 7 3.3121 5.6929 1.0509 10 6 3.5488 6.9407 1.8007 11 6 4.4617 7.7915 0.8807 12 6 3.9067 7.4383 -0.5172 13 6 3.4996 5.9624 -0.3838 14 6 4.9983 7.5984 -1.5702 15 7 4.3915 7.4176 -2.9002 16 6 4.9491 6.5727 -3.8223 17 1 4.3276 6.1058 -4.5722 18 6 6.3130 6.3162 -3.7934 19 7 7.1157 7.1010 -3.1062 20 14 7.0092 4.8575 -4.7296 21 1 6.7026 5.0050 -6.1752 22 1 8.4809 4.8032 -4.5384 23 1 6.3976 3.6041 -4.2193 24 6 3.1665 8.1736 -3.2059 25 6 2.1579 7.9462 -2.0743 26 8 2.7796 8.2478 -0.8212 27 6 2.1841 2.1388 1.1008 28 6 1.9017 1.7091 2.5174 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3328 1.7132 -2.1293 35 1 3.0988 4.1102 -1.3976 36 1 2.6068 7.4578 1.9832 37 1 4.0537 6.7270 2.7428 38 1 5.5041 7.4878 0.9756 39 1 4.3453 8.8548 1.0901 40 1 4.2873 5.3227 -0.7818 41 1 2.5674 5.7847 -0.9198 42 1 5.4345 8.5948 -1.4982 43 1 5.7722 6.8468 -1.4139 44 1 8.0688 6.9217 -3.0857 45 1 3.4006 9.2356 -3.2796 46 1 2.7451 7.8226 -4.1479 47 1 1.2956 8.5971 -2.2189 48 1 1.8342 6.9054 -2.0789 49 1 0.8681 1.9462 2.7697 50 1 2.0610 0.6348 2.6098 51 1 2.5716 2.2356 3.1972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972515199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:11 Heat of formation + Delta-G solvation = -9.503466 kcal Electronic energy + Delta-G solvation = -32754.412286 eV Core-core repulsion = 28655.153405 eV Total energy + Delta-G solvation = -4099.258881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44385 -41.37309 -39.72658 -37.39147 -36.22741 -35.02940 -33.29446 -32.99252 -32.52589 -31.09487 -29.75931 -29.20659 -27.76424 -27.03352 -25.22008 -24.96523 -24.15017 -22.70864 -22.28626 -20.90602 -20.55877 -19.27982 -18.82303 -18.14278 -17.81937 -17.28457 -16.73412 -16.60214 -16.21376 -16.02557 -15.81972 -15.70678 -15.25637 -15.14043 -14.99083 -14.66828 -14.54821 -14.17366 -14.14844 -14.04557 -13.74790 -13.58128 -13.29560 -13.20190 -13.01653 -12.86669 -12.82525 -12.76465 -12.65940 -12.44848 -12.42551 -12.27307 -12.15630 -12.11370 -12.07396 -11.73700 -11.08893 -10.95758 -10.69118 -10.44104 -9.74013 -9.52882 -9.07817 -8.67704 -7.86758 -5.33212 0.72157 1.47827 1.48164 1.50487 1.56069 1.81649 2.18762 2.49239 2.51523 2.81042 3.28197 3.42925 3.53795 3.71922 3.80410 3.82147 3.98984 4.04183 4.10490 4.13770 4.26214 4.30894 4.33410 4.37717 4.41733 4.53548 4.59123 4.63086 4.68709 4.69479 4.79089 4.81032 4.82986 4.87095 4.91716 4.94411 5.00953 5.06440 5.08695 5.15862 5.20740 5.26011 5.27245 5.38526 5.54306 5.65549 5.78091 6.11703 6.32807 6.37698 6.39988 6.55834 7.10418 7.23919 7.78922 8.34386 9.19495 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.004286 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.408172 B = 6530.977470 C = 8080.375453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 N -0.433 5.433 4 C -0.010 4.010 5 C -0.196 4.196 6 C -0.273 4.273 7 C 0.599 3.401 8 O -0.586 6.586 9 N -0.615 5.615 10 C 0.115 3.885 11 C -0.112 4.112 12 C 0.090 3.910 13 C 0.113 3.887 14 C 0.178 3.822 15 N -0.610 5.610 16 C -0.258 4.258 17 H 0.073 0.927 18 C -0.043 4.043 19 N -0.934 5.934 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.275 1.275 24 C 0.106 3.894 25 C 0.049 3.951 26 O -0.377 6.377 27 C 0.106 3.894 28 C -0.086 4.086 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.005 0.995 43 H 0.064 0.936 44 H 0.250 0.750 45 H 0.019 0.981 46 H 0.073 0.927 47 H 0.120 0.880 48 H 0.049 0.951 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 -12.424 6.632 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.109 5.109 4 C -0.136 4.136 5 C -0.219 4.219 6 C -0.283 4.283 7 C 0.393 3.607 8 O -0.470 6.470 9 N -0.347 5.347 10 C -0.007 4.007 11 C -0.150 4.150 12 C 0.048 3.952 13 C -0.010 4.010 14 C 0.052 3.948 15 N -0.335 5.335 16 C -0.388 4.388 17 H 0.091 0.909 18 C -0.239 4.239 19 N -0.580 5.580 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.201 1.201 24 C -0.019 4.019 25 C -0.029 4.029 26 O -0.296 6.296 27 C -0.013 4.013 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.210 0.790 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.023 0.977 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.092 0.908 47 H 0.137 0.863 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.110 0.890 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.708 -12.778 7.342 20.127 hybrid contribution 1.107 -0.224 -1.107 1.581 sum -12.601 -13.002 6.235 19.150 Atomic orbital electron populations 1.22139 0.93357 1.04290 1.02470 1.22275 0.96314 0.78304 1.06335 1.44020 1.49119 1.13024 1.04767 1.22092 1.06598 0.92405 0.92533 1.22627 1.07339 0.98735 0.93247 1.20146 1.18716 0.95486 0.93943 1.17362 0.75446 0.81291 0.86612 1.90638 1.57041 1.83925 1.15390 1.48379 1.68663 1.09297 1.08345 1.22247 0.99510 0.83514 0.95444 1.22723 0.99176 1.01951 0.91162 1.22488 0.87855 0.88738 0.96134 1.22483 1.00800 0.96678 0.81084 1.20919 0.92369 0.98511 0.83038 1.44340 1.27885 1.49772 1.11468 1.19440 0.90456 1.18512 1.10412 0.90897 1.25719 0.96419 1.00966 1.00791 1.70147 1.03046 1.38170 1.46623 0.85463 0.76589 0.80303 0.78899 1.20012 1.22518 1.20114 1.21757 0.87901 0.94582 0.97659 1.23177 0.95487 1.00918 0.83284 1.87690 1.44209 1.59241 1.38434 1.20494 1.00082 0.90013 0.90747 1.20537 1.03291 1.02452 0.88071 0.92635 0.88188 0.92707 0.86917 0.87606 0.78978 0.84228 0.90708 0.90138 0.89500 0.87402 0.92166 0.90877 0.97671 0.91735 0.94136 0.96300 0.90809 0.86261 0.93268 0.89915 0.88953 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 71.98 0.74 -0.92 16 2 C 0.09 1.04 6.45 86.38 0.56 1.59 16 3 N -0.43 -9.52 2.69 -509.90 -1.37 -10.89 16 4 C -0.01 -0.25 11.33 83.12 0.94 0.69 16 5 C -0.20 -6.44 9.40 23.62 0.22 -6.22 16 6 C -0.27 -9.45 6.22 -19.04 -0.12 -9.57 16 7 C 0.60 23.13 7.83 86.61 0.68 23.81 16 8 O -0.59 -24.11 15.03 -4.11 -0.06 -24.17 16 9 N -0.61 -22.80 3.33 -816.35 -2.72 -25.52 16 10 C 0.11 3.76 6.93 86.88 0.60 4.36 16 11 C -0.11 -3.71 6.21 31.80 0.20 -3.52 16 12 C 0.09 3.46 0.81 -10.22 -0.01 3.45 16 13 C 0.11 4.30 4.07 86.48 0.35 4.65 16 14 C 0.18 8.41 3.96 86.07 0.34 8.75 16 15 N -0.61 -29.45 2.96 -698.63 -2.07 -31.52 16 16 C -0.26 -13.50 9.65 84.03 0.81 -12.69 16 17 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 18 C -0.04 -2.32 4.96 84.86 0.42 -1.90 16 19 N -0.93 -53.84 11.19 21.65 0.24 -53.59 16 20 Si 0.96 43.46 29.58 68.60 2.03 45.49 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.11 4.23 6.72 86.35 0.58 4.81 16 25 C 0.05 1.63 6.76 72.08 0.49 2.12 16 26 O -0.38 -13.99 10.26 -148.97 -1.53 -15.52 16 27 C 0.11 2.91 6.89 41.78 0.29 3.20 16 28 C -0.09 -1.91 9.59 71.24 0.68 -1.23 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.93 8.11 -2.39 -0.02 0.91 16 33 H 0.11 0.93 7.05 -2.39 -0.02 0.91 16 34 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.14 5.06 4.83 -2.91 -0.01 5.04 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.54 8.00 -2.39 -0.02 2.52 16 38 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16 39 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 2.60 6.44 -2.39 -0.02 2.59 16 41 H 0.07 2.78 4.78 -2.39 -0.01 2.77 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.06 3.43 6.01 -2.38 -0.01 3.42 16 44 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 47 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 48 H 0.05 1.65 6.22 -2.39 -0.01 1.63 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 1.38 7.02 -2.38 -0.02 1.37 16 51 H 0.08 2.15 6.36 -2.39 -0.02 2.13 16 Total: -1.00 -70.75 392.69 3.23 -67.52 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.93 Total: 26.83 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 7.77 Total: 21.38 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -5.92 Total: -121.53 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.59 Total: -39.69 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.75 3.23 -67.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972515199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.016 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds