Wall clock time and date at job start Wed Apr 1 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47523 * 2 1 4 4 C 1.36457 * 124.84921 * 264.97722 * 3 2 1 5 5 C 1.34484 * 108.85532 * 180.02562 * 4 3 2 6 6 C 1.46682 * 106.33476 * 359.97438 * 5 4 3 7 7 C 1.47267 * 126.94200 * 179.97438 * 6 5 4 8 8 O 1.21634 * 119.99839 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99865 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99802 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47051 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.51933 * 307.79717 * 11 10 9 13 13 C 1.55056 * 110.58326 * 185.00046 * 11 10 9 14 14 C 1.55023 * 102.12990 * 204.93500 * 13 11 10 15 15 C 1.53325 * 103.78634 * 20.86591 * 14 13 11 16 16 C 1.52646 * 115.56358 * 133.64561 * 15 14 13 17 17 N 1.47223 * 87.78158 * 90.04343 * 16 15 14 18 18 C 1.36942 * 135.96799 * 206.41017 * 17 16 15 19 19 H 1.07998 * 119.99662 * 6.48846 * 18 17 16 20 20 C 1.38810 * 119.99956 * 186.48255 * 18 17 16 21 21 N 1.31624 * 120.00077 * 6.42088 * 20 18 17 22 22 Si 1.86795 * 119.99801 * 186.41661 * 20 18 17 23 23 H 1.48495 * 109.47273 * 265.02243 * 22 20 18 24 24 H 1.48505 * 109.47005 * 145.02269 * 22 20 18 25 25 H 1.48507 * 109.47115 * 25.02459 * 22 20 18 26 26 C 1.47220 * 88.06553 * 26.66837 * 17 16 15 27 27 O 1.42839 * 108.32946 * 1.60036 * 15 14 13 28 28 C 1.34662 * 124.85650 * 85.27926 * 3 2 1 29 29 C 1.50696 * 125.79687 * 0.03015 * 28 3 2 30 30 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47508 * 300.00236 * 1 2 3 32 32 H 1.09000 * 109.47004 * 60.00181 * 1 2 3 33 33 H 1.08998 * 109.47332 * 239.99478 * 2 1 3 34 34 H 1.09006 * 109.46583 * 119.99657 * 2 1 3 35 35 H 1.07994 * 125.56688 * 0.03737 * 4 3 2 36 36 H 1.07998 * 126.83057 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00214 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.46906 * 60.00262 * 10 9 7 39 39 H 1.09003 * 109.47144 * 300.00390 * 10 9 7 40 40 H 1.09004 * 110.87195 * 86.77921 * 13 11 10 41 41 H 1.09003 * 110.87272 * 323.09601 * 13 11 10 42 42 H 1.09002 * 110.56851 * 262.28773 * 14 13 11 43 43 H 1.08999 * 110.69205 * 139.49939 * 14 13 11 44 44 H 1.08996 * 113.50317 * 335.31791 * 16 15 14 45 45 H 1.09000 * 113.55597 * 204.78002 * 16 15 14 46 46 H 0.97001 * 119.99419 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.50121 * 88.06251 * 26 17 16 48 48 H 1.09000 * 113.49959 * 218.60064 * 26 17 16 49 49 H 1.09001 * 109.47284 * 270.14847 * 29 28 3 50 50 H 1.09001 * 109.47576 * 30.15271 * 29 28 3 51 51 H 1.09001 * 109.47310 * 150.15480 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3707 2.0836 -1.1155 5 6 2.7717 3.3130 -0.7464 6 6 2.6533 3.3641 0.7148 7 6 2.9759 4.5041 1.5895 8 8 2.8296 4.4074 2.7932 9 7 3.4331 5.6543 1.0564 10 6 3.7535 6.7885 1.9266 11 6 4.2474 7.9605 1.0759 12 1 5.0546 7.6407 0.4169 13 6 4.7126 9.1318 1.9792 14 6 4.5382 10.3546 1.0424 15 6 3.5396 9.8664 -0.0136 16 6 2.3975 10.8271 -0.3342 17 7 3.2557 11.4079 -1.3799 18 6 3.3649 12.6233 -2.0014 19 1 2.7739 13.4598 -1.6590 20 6 4.2353 12.7800 -3.0713 21 7 4.8607 11.7345 -3.5696 22 14 4.5191 14.4747 -3.8038 23 1 3.6168 14.6686 -4.9672 24 1 5.9314 14.5919 -4.2478 25 1 4.2349 15.5110 -2.7788 26 6 3.9408 10.1079 -1.4697 27 8 3.1587 8.5289 0.3126 28 6 2.1892 2.1370 1.1013 29 6 1.9130 1.7052 2.5184 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.3335 1.7128 -2.1292 36 1 3.1130 4.1051 -1.3964 37 1 3.5494 5.7315 0.0966 38 1 4.5322 6.4971 2.6314 39 1 2.8609 7.0891 2.4753 40 1 5.7567 9.0091 2.2672 41 1 4.0741 9.2217 2.8581 42 1 5.4879 10.6196 0.5777 43 1 4.1311 11.2045 1.5902 44 1 2.1714 11.5196 0.4767 45 1 1.5090 10.3322 -0.7263 46 1 5.4686 11.8441 -4.3174 47 1 3.4718 9.4168 -2.1701 48 1 5.0174 10.1932 -1.6173 49 1 0.8799 1.9397 2.7749 50 1 2.0751 0.6311 2.6091 51 1 2.5843 2.2324 3.1963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053649060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:38 Heat of formation + Delta-G solvation = 21.754083 kcal Electronic energy + Delta-G solvation = -30328.154118 eV Core-core repulsion = 26230.250666 eV Total energy + Delta-G solvation = -4097.903452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.58300 -39.93939 -38.93268 -36.57048 -34.45689 -34.29640 -32.09461 -31.78814 -31.72662 -30.03979 -28.87509 -27.10749 -26.32504 -24.75721 -24.42379 -23.45525 -22.15180 -21.69625 -21.13145 -20.05055 -19.05100 -18.75850 -17.57302 -16.79046 -16.33616 -16.20861 -15.63580 -15.44359 -15.10645 -15.01047 -14.69868 -14.43344 -14.03095 -13.78773 -13.68085 -13.62727 -13.26508 -13.15739 -13.11082 -12.84245 -12.74248 -12.52911 -12.33450 -12.20806 -12.04681 -11.74507 -11.66807 -11.62705 -11.33902 -11.11599 -10.93745 -10.81852 -10.63266 -10.54701 -10.18616 -10.05844 -9.71969 -9.49349 -8.99217 -8.78636 -8.72184 -8.67738 -8.27375 -6.90103 -5.79866 -3.10933 1.67932 2.29450 2.52871 3.38411 3.43307 3.45234 3.45818 3.63318 4.09090 4.20065 4.46732 4.48613 4.52275 4.66773 4.76028 4.85662 4.95954 5.03348 5.05718 5.10464 5.18901 5.24054 5.27608 5.36228 5.39888 5.41370 5.49453 5.51311 5.55724 5.66409 5.73430 5.78492 5.81745 5.83391 6.01803 6.06038 6.16948 6.43840 6.44305 6.52389 6.59451 6.65082 6.65661 6.70932 6.90481 7.01634 7.05410 7.17568 7.48601 7.67299 7.73689 7.94462 8.45258 9.01725 9.67907 10.62405 11.38981 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002020 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.775381 B =13858.040734 C =14953.622075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.019 4.019 5 C -0.163 4.163 6 C -0.236 4.236 7 C 0.592 3.408 8 O -0.560 6.560 9 N -0.719 5.719 10 C 0.132 3.868 11 C 0.064 3.936 12 H 0.075 0.925 13 C -0.146 4.146 14 C -0.109 4.109 15 C 0.046 3.954 16 C 0.126 3.874 17 N -0.602 5.602 18 C -0.216 4.216 19 H 0.083 0.917 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.156 3.844 27 O -0.357 6.357 28 C 0.104 3.896 29 C -0.092 4.092 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.039 0.961 46 H 0.254 0.746 47 H 0.035 0.965 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -24.495 9.821 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.120 5.120 4 C -0.145 4.145 5 C -0.188 4.188 6 C -0.246 4.246 7 C 0.381 3.619 8 O -0.440 6.440 9 N -0.370 5.370 10 C 0.008 3.992 11 C 0.006 3.994 12 H 0.093 0.907 13 C -0.184 4.184 14 C -0.147 4.147 15 C 0.006 3.994 16 C 0.000 4.000 17 N -0.330 5.330 18 C -0.343 4.343 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.030 3.970 27 O -0.275 6.275 28 C -0.012 4.012 29 C -0.149 4.149 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.240 0.760 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.792 -24.736 10.343 27.078 hybrid contribution 0.282 0.993 -1.360 1.708 sum -3.510 -23.743 8.983 25.627 Atomic orbital electron populations 1.22174 0.94169 1.03045 1.03501 1.21877 0.95722 0.80524 1.04424 1.43736 1.50424 1.11959 1.05868 1.21679 1.08176 0.93380 0.91222 1.22080 1.06127 0.97216 0.93327 1.20107 1.16144 0.94811 0.93499 1.17320 0.76009 0.81691 0.86858 1.90707 1.55106 1.83188 1.15032 1.45709 1.67297 1.12725 1.11262 1.21387 1.01217 0.84149 0.92463 1.23322 0.90355 0.93138 0.92623 0.90725 1.23134 1.01847 0.94695 0.98738 1.22333 0.99870 0.97219 0.95277 1.23866 0.97252 0.81444 0.96861 1.22428 0.93321 0.92118 0.92155 1.45388 1.36262 1.07798 1.43523 1.18906 1.20901 0.84621 1.09863 0.89953 1.24841 1.00401 0.97606 0.97620 1.69867 1.32112 1.27763 1.26742 0.86081 0.77300 0.83210 0.79055 1.21592 1.21589 1.20470 1.22397 0.98414 0.86540 0.89694 1.88763 1.39357 1.26721 1.72680 1.20266 1.00969 0.90681 0.89321 1.20547 1.03712 1.00733 0.89940 0.90667 0.91692 0.91663 0.88952 0.89261 0.81698 0.83509 0.76033 0.90449 0.90738 0.90366 0.90532 0.90179 0.90533 0.93773 0.94320 0.93612 0.94764 0.92090 0.90644 0.92180 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 37.15 0.38 -0.40 16 2 C 0.10 0.48 6.46 -4.05 -0.03 0.45 16 3 N -0.44 -3.84 2.69 -112.53 -0.30 -4.14 16 4 C -0.02 -0.17 11.33 -16.82 -0.19 -0.36 16 5 C -0.16 -1.79 10.56 -37.50 -0.40 -2.18 16 6 C -0.24 -3.03 6.29 -103.35 -0.65 -3.68 16 7 C 0.59 8.66 7.81 -12.59 -0.10 8.56 16 8 O -0.56 -9.41 14.82 5.25 0.08 -9.33 16 9 N -0.72 -9.65 5.55 -61.43 -0.34 -9.99 16 10 C 0.13 1.74 5.41 -4.04 -0.02 1.72 16 11 C 0.06 0.90 3.38 -25.64 -0.09 0.81 16 12 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.15 -1.92 6.60 -24.58 -0.16 -2.08 16 14 C -0.11 -1.83 6.46 -25.49 -0.16 -2.00 16 15 C 0.05 0.91 1.66 -90.66 -0.15 0.76 16 16 C 0.13 2.75 8.20 -8.04 -0.07 2.69 16 17 N -0.60 -15.75 3.73 -184.62 -0.69 -16.44 16 18 C -0.22 -6.09 10.73 -15.06 -0.16 -6.25 16 19 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.38 11.82 55.49 0.66 -26.73 16 22 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.16 3.76 6.73 -7.88 -0.05 3.70 16 27 O -0.36 -6.38 11.02 -35.23 -0.39 -6.76 16 28 C 0.10 1.15 6.89 -81.88 -0.56 0.58 16 29 C -0.09 -0.85 9.51 36.00 0.34 -0.51 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.30 8.11 -51.93 -0.42 -0.12 16 34 H 0.09 0.35 7.04 -51.93 -0.37 -0.02 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.15 1.43 7.70 -52.49 -0.40 1.03 16 37 H 0.40 5.03 7.60 -40.82 -0.31 4.72 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 42 H 0.08 1.42 7.82 -51.93 -0.41 1.02 16 43 H 0.08 1.26 7.81 -51.93 -0.41 0.86 16 44 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.57 7.40 -51.93 -0.38 1.19 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.39 7.02 -51.93 -0.36 0.03 16 51 H 0.10 1.12 6.47 -51.93 -0.34 0.79 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -34.70 412.82 -10.38 -45.08 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.42 Total: 3.51 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.17 Total: 1.49 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.68 Total: -57.30 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.31 Total: -16.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.70 -10.38 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053649060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.835 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds