Wall clock time and date at job start Wed Apr 1 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47523 * 2 1 4 4 C 1.36457 * 124.84921 * 264.97722 * 3 2 1 5 5 C 1.34484 * 108.85532 * 180.02562 * 4 3 2 6 6 C 1.46682 * 106.33476 * 359.97438 * 5 4 3 7 7 C 1.47267 * 126.94200 * 179.97438 * 6 5 4 8 8 O 1.21634 * 119.99839 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99865 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99802 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47051 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.51933 * 307.79717 * 11 10 9 13 13 C 1.55056 * 110.58326 * 185.00046 * 11 10 9 14 14 C 1.55023 * 102.12990 * 204.93500 * 13 11 10 15 15 C 1.53325 * 103.78634 * 20.86591 * 14 13 11 16 16 C 1.52646 * 115.56358 * 133.64561 * 15 14 13 17 17 N 1.47223 * 87.78158 * 90.04343 * 16 15 14 18 18 C 1.36942 * 135.96799 * 206.41017 * 17 16 15 19 19 H 1.07998 * 119.99662 * 6.48846 * 18 17 16 20 20 C 1.38810 * 119.99956 * 186.48255 * 18 17 16 21 21 N 1.31624 * 120.00077 * 6.42088 * 20 18 17 22 22 Si 1.86795 * 119.99801 * 186.41661 * 20 18 17 23 23 H 1.48495 * 109.47273 * 265.02243 * 22 20 18 24 24 H 1.48505 * 109.47005 * 145.02269 * 22 20 18 25 25 H 1.48507 * 109.47115 * 25.02459 * 22 20 18 26 26 C 1.47220 * 88.06553 * 26.66837 * 17 16 15 27 27 O 1.42839 * 108.32946 * 1.60036 * 15 14 13 28 28 C 1.34662 * 124.85650 * 85.27926 * 3 2 1 29 29 C 1.50696 * 125.79687 * 0.03015 * 28 3 2 30 30 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47508 * 300.00236 * 1 2 3 32 32 H 1.09000 * 109.47004 * 60.00181 * 1 2 3 33 33 H 1.08998 * 109.47332 * 239.99478 * 2 1 3 34 34 H 1.09006 * 109.46583 * 119.99657 * 2 1 3 35 35 H 1.07994 * 125.56688 * 0.03737 * 4 3 2 36 36 H 1.07998 * 126.83057 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00214 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.46906 * 60.00262 * 10 9 7 39 39 H 1.09003 * 109.47144 * 300.00390 * 10 9 7 40 40 H 1.09004 * 110.87195 * 86.77921 * 13 11 10 41 41 H 1.09003 * 110.87272 * 323.09601 * 13 11 10 42 42 H 1.09002 * 110.56851 * 262.28773 * 14 13 11 43 43 H 1.08999 * 110.69205 * 139.49939 * 14 13 11 44 44 H 1.08996 * 113.50317 * 335.31791 * 16 15 14 45 45 H 1.09000 * 113.55597 * 204.78002 * 16 15 14 46 46 H 0.97001 * 119.99419 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.50121 * 88.06251 * 26 17 16 48 48 H 1.09000 * 113.49959 * 218.60064 * 26 17 16 49 49 H 1.09001 * 109.47284 * 270.14847 * 29 28 3 50 50 H 1.09001 * 109.47576 * 30.15271 * 29 28 3 51 51 H 1.09001 * 109.47310 * 150.15480 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3707 2.0836 -1.1155 5 6 2.7717 3.3130 -0.7464 6 6 2.6533 3.3641 0.7148 7 6 2.9759 4.5041 1.5895 8 8 2.8296 4.4074 2.7932 9 7 3.4331 5.6543 1.0564 10 6 3.7535 6.7885 1.9266 11 6 4.2474 7.9605 1.0759 12 1 5.0546 7.6407 0.4169 13 6 4.7126 9.1318 1.9792 14 6 4.5382 10.3546 1.0424 15 6 3.5396 9.8664 -0.0136 16 6 2.3975 10.8271 -0.3342 17 7 3.2557 11.4079 -1.3799 18 6 3.3649 12.6233 -2.0014 19 1 2.7739 13.4598 -1.6590 20 6 4.2353 12.7800 -3.0713 21 7 4.8607 11.7345 -3.5696 22 14 4.5191 14.4747 -3.8038 23 1 3.6168 14.6686 -4.9672 24 1 5.9314 14.5919 -4.2478 25 1 4.2349 15.5110 -2.7788 26 6 3.9408 10.1079 -1.4697 27 8 3.1587 8.5289 0.3126 28 6 2.1892 2.1370 1.1013 29 6 1.9130 1.7052 2.5184 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.3335 1.7128 -2.1292 36 1 3.1130 4.1051 -1.3964 37 1 3.5494 5.7315 0.0966 38 1 4.5322 6.4971 2.6314 39 1 2.8609 7.0891 2.4753 40 1 5.7567 9.0091 2.2672 41 1 4.0741 9.2217 2.8581 42 1 5.4879 10.6196 0.5777 43 1 4.1311 11.2045 1.5902 44 1 2.1714 11.5196 0.4767 45 1 1.5090 10.3322 -0.7263 46 1 5.4686 11.8441 -4.3174 47 1 3.4718 9.4168 -2.1701 48 1 5.0174 10.1932 -1.6173 49 1 0.8799 1.9397 2.7749 50 1 2.0751 0.6311 2.6091 51 1 2.5843 2.2324 3.1963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053649060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:37 Heat of formation + Delta-G solvation = -0.446941 kcal Electronic energy + Delta-G solvation = -30329.116826 eV Core-core repulsion = 26230.250666 eV Total energy + Delta-G solvation = -4098.866161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32878 -41.44109 -40.07483 -38.17088 -35.60137 -34.93476 -34.14506 -33.05478 -32.50365 -31.04903 -30.02572 -28.74146 -27.24184 -26.60932 -25.51980 -24.40335 -23.54168 -22.83622 -22.31078 -20.93989 -20.44130 -19.85770 -18.75844 -18.37003 -17.65636 -17.07540 -17.02955 -16.71736 -16.28238 -16.23052 -15.78399 -15.65121 -15.48737 -15.25458 -14.69279 -14.58342 -14.30858 -14.20052 -14.06742 -13.93228 -13.76269 -13.60174 -13.47008 -13.30524 -12.97539 -12.92469 -12.84166 -12.73735 -12.62799 -12.42871 -12.37453 -12.23804 -12.09580 -12.07779 -11.95526 -11.55687 -11.39060 -10.87175 -10.83644 -10.31706 -10.07880 -9.50663 -9.07669 -8.99942 -7.95797 -5.29504 0.77691 1.45676 1.47763 1.52651 1.57516 1.87670 2.40448 2.45890 2.61438 2.80040 3.26871 3.42110 3.65621 3.68938 3.75129 3.82667 3.83654 3.99089 4.02805 4.12866 4.15357 4.18550 4.34374 4.43347 4.49307 4.56134 4.60661 4.62862 4.71184 4.74059 4.82550 4.83762 4.87343 4.90850 4.95864 5.00434 5.01722 5.09107 5.09890 5.14009 5.17191 5.23322 5.29989 5.33737 5.43774 5.53710 5.82741 5.83289 6.14008 6.15176 6.39442 6.68165 6.85557 7.36925 7.54127 8.54777 9.23420 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002020 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.775381 B =13858.040734 C =14953.622075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.437 5.437 4 C -0.009 4.009 5 C -0.187 4.187 6 C -0.273 4.273 7 C 0.586 3.414 8 O -0.589 6.589 9 N -0.719 5.719 10 C 0.139 3.861 11 C 0.063 3.937 12 H 0.080 0.920 13 C -0.131 4.131 14 C -0.108 4.108 15 C 0.074 3.926 16 C 0.123 3.877 17 N -0.628 5.628 18 C -0.230 4.230 19 H 0.089 0.911 20 C -0.067 4.067 21 N -0.954 5.954 22 Si 0.985 3.015 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.154 3.846 27 O -0.369 6.369 28 C 0.099 3.901 29 C -0.087 4.087 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.197 0.803 36 H 0.149 0.851 37 H 0.408 0.592 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.250 0.750 47 H 0.008 0.992 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 -25.772 10.677 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.113 5.113 4 C -0.136 4.136 5 C -0.211 4.211 6 C -0.283 4.283 7 C 0.377 3.623 8 O -0.473 6.473 9 N -0.369 5.369 10 C 0.015 3.985 11 C 0.005 3.995 12 H 0.098 0.902 13 C -0.169 4.169 14 C -0.146 4.146 15 C 0.033 3.967 16 C -0.003 4.003 17 N -0.355 5.355 18 C -0.358 4.358 19 H 0.107 0.893 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.812 3.188 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.188 1.188 26 C 0.028 3.972 27 O -0.287 6.287 28 C -0.020 4.020 29 C -0.145 4.145 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.214 0.786 36 H 0.167 0.833 37 H 0.243 0.757 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.026 0.974 48 H 0.054 0.946 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.936 -26.031 11.211 28.615 hybrid contribution 0.247 1.259 -1.651 2.091 sum -3.688 -24.772 9.560 26.808 Atomic orbital electron populations 1.22153 0.93838 1.04184 1.02351 1.22235 0.95935 0.78568 1.06383 1.44024 1.49180 1.13071 1.05001 1.22160 1.06214 0.92681 0.92521 1.22235 1.07636 0.98558 0.92668 1.20214 1.18508 0.95232 0.94349 1.17670 0.75542 0.82290 0.86791 1.90675 1.56596 1.83787 1.16192 1.45735 1.67050 1.12638 1.11474 1.21338 1.01215 0.83672 0.92284 1.23517 0.89459 0.93779 0.92748 0.90225 1.23127 1.04085 0.91681 0.98027 1.22315 0.98224 0.99055 0.95026 1.23405 0.96255 0.82269 0.94810 1.22539 0.93413 0.92847 0.91476 1.45700 1.37738 1.07848 1.44241 1.19339 1.20674 0.85819 1.09967 0.89284 1.25751 1.00440 1.01495 0.98302 1.70056 1.32911 1.29963 1.27239 0.84974 0.76701 0.78864 0.78245 1.21434 1.21807 1.18806 1.22327 0.96469 0.85787 0.92640 1.88753 1.40839 1.25833 1.73286 1.20509 1.00315 0.90555 0.90582 1.20507 1.03106 1.02281 0.88569 0.88386 0.93027 0.92606 0.86599 0.87789 0.78620 0.83322 0.75673 0.88810 0.91763 0.87502 0.88787 0.91420 0.89851 0.91825 0.94833 0.94091 0.97373 0.94561 0.90511 0.89222 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 71.98 0.74 -0.41 16 2 C 0.09 0.62 6.46 86.38 0.56 1.18 16 3 N -0.44 -6.79 2.69 -509.94 -1.37 -8.16 16 4 C -0.01 -0.16 11.33 83.11 0.94 0.79 16 5 C -0.19 -4.08 10.56 23.62 0.25 -3.83 16 6 C -0.27 -7.11 6.29 -19.04 -0.12 -7.23 16 7 C 0.59 17.54 7.81 86.62 0.68 18.21 16 8 O -0.59 -20.27 14.82 -4.14 -0.06 -20.33 16 9 N -0.72 -19.47 5.55 -466.50 -2.59 -22.06 16 10 C 0.14 3.54 5.41 86.38 0.47 4.01 16 11 C 0.06 1.69 3.38 31.30 0.11 1.79 16 12 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.13 -3.12 6.60 31.99 0.21 -2.91 16 14 C -0.11 -3.51 6.46 31.40 0.20 -3.31 16 15 C 0.07 2.89 1.66 -10.82 -0.02 2.88 16 16 C 0.12 5.38 8.20 83.40 0.68 6.06 16 17 N -0.63 -33.53 3.73 -739.11 -2.75 -36.29 16 18 C -0.23 -13.16 10.73 84.03 0.90 -12.26 16 19 H 0.09 4.82 7.84 -2.91 -0.02 4.79 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.95 -58.54 11.82 21.65 0.26 -58.29 16 22 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 C 0.15 7.73 6.73 83.50 0.56 8.30 16 27 O -0.37 -13.09 11.02 -148.98 -1.64 -14.73 16 28 C 0.10 2.11 6.89 41.78 0.29 2.40 16 29 C -0.09 -1.56 9.51 71.23 0.68 -0.88 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.12 0.32 8.11 -2.39 -0.02 0.30 16 34 H 0.10 0.46 7.04 -2.38 -0.02 0.44 16 35 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.15 2.98 7.70 -2.91 -0.02 2.96 16 37 H 0.41 10.40 7.60 -92.71 -0.70 9.70 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 42 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 43 H 0.08 2.60 7.81 -2.39 -0.02 2.58 16 44 H 0.06 2.53 7.91 -2.39 -0.02 2.51 16 45 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.04 1.96 7.40 -2.39 -0.02 1.95 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.09 0.99 7.02 -2.39 -0.02 0.98 16 51 H 0.08 1.78 6.47 -2.39 -0.02 1.77 16 Total: -1.00 -77.84 412.82 1.68 -76.16 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.22 Total: 24.37 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 7.59 Total: 11.42 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.46 Total: -124.79 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.70 Total: -35.06 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.84 1.68 -76.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053649060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.715 kcal (2) G-P(sol) polarization free energy of solvation -77.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds