Wall clock time and date at job start Wed Apr 1 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46948 * 2 1 4 4 C 1.36447 * 124.84769 * 264.97246 * 3 2 1 5 5 C 1.34486 * 108.85297 * 180.02562 * 4 3 2 6 6 C 1.46684 * 106.33513 * 0.02562 * 5 4 3 7 7 C 1.47264 * 126.94334 * 180.02562 * 6 5 4 8 8 O 1.21629 * 119.99840 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00142 * 0.02562 * 7 6 5 10 10 C 1.46490 * 120.00203 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47474 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.82319 * 59.43096 * 11 10 9 13 13 C 1.54471 * 109.91343 * 180.37932 * 11 10 9 14 14 C 1.55499 * 102.39227 * 140.91823 * 13 11 10 15 15 C 1.53881 * 100.76022 * 327.03014 * 14 13 11 16 16 C 1.52378 * 115.67687 * 263.23651 * 15 14 13 17 17 N 1.47276 * 87.70244 * 218.74148 * 16 15 14 18 18 C 1.36936 * 135.93576 * 205.92145 * 17 16 15 19 19 H 1.08005 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99801 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00324 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47387 * 119.99569 * 22 20 18 25 25 H 1.48498 * 109.47340 * 239.99917 * 22 20 18 26 26 C 1.47273 * 88.12953 * 26.17582 * 17 16 15 27 27 O 1.42413 * 106.67075 * 34.96969 * 15 14 13 28 28 C 1.34658 * 124.85157 * 85.31122 * 3 2 1 29 29 C 1.50697 * 125.80211 * 0.02562 * 28 3 2 30 30 H 1.08993 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46839 * 299.99758 * 1 2 3 32 32 H 1.08996 * 109.47226 * 59.99632 * 1 2 3 33 33 H 1.08991 * 109.46970 * 239.99611 * 2 1 3 34 34 H 1.09000 * 109.46869 * 120.00034 * 2 1 3 35 35 H 1.08000 * 125.57600 * 0.02562 * 4 3 2 36 36 H 1.08005 * 126.83091 * 179.97438 * 5 4 3 37 37 H 0.97001 * 119.99516 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.47433 * 59.99569 * 10 9 7 39 39 H 1.09000 * 109.47239 * 299.99952 * 10 9 7 40 40 H 1.09003 * 110.81511 * 259.14403 * 13 11 10 41 41 H 1.08997 * 110.82218 * 22.49347 * 13 11 10 42 42 H 1.08997 * 111.16294 * 209.14843 * 14 13 11 43 43 H 1.09004 * 111.15839 * 84.90192 * 14 13 11 44 44 H 1.09001 * 113.51593 * 104.03916 * 16 15 14 45 45 H 1.08996 * 113.51236 * 333.44916 * 16 15 14 46 46 H 0.97007 * 120.00452 * 180.02562 * 21 20 18 47 47 H 1.08999 * 113.51652 * 88.52643 * 26 17 16 48 48 H 1.08999 * 113.51521 * 219.11206 * 26 17 16 49 49 H 1.09008 * 109.47049 * 270.18707 * 29 28 3 50 50 H 1.08997 * 109.47560 * 30.18855 * 29 28 3 51 51 H 1.09006 * 109.47287 * 150.18768 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3707 2.0836 -1.1155 5 6 2.7716 3.3131 -0.7463 6 6 2.6542 3.3638 0.7150 7 6 2.9760 4.5040 1.5897 8 8 2.8308 4.4069 2.7934 9 7 3.4315 5.6550 1.0565 10 6 3.7522 6.7889 1.9267 11 6 4.2437 7.9617 1.0759 12 1 3.4712 8.2510 0.3635 13 6 4.5940 9.1606 1.9848 14 6 5.8745 9.7284 1.3096 15 6 6.5110 8.4361 0.7683 16 6 7.5914 7.8148 1.6450 17 7 8.3252 7.4924 0.4095 18 6 9.2455 6.5526 0.0285 19 1 9.5880 5.8136 0.7377 20 6 9.7389 6.5506 -1.2690 21 7 9.3219 7.4516 -2.1331 22 14 10.9947 5.2691 -1.7887 23 1 11.2968 4.3777 -0.6400 24 1 10.4460 4.4642 -2.9094 25 1 12.2403 5.9469 -2.2295 26 6 7.6416 8.6264 -0.2352 27 8 5.4383 7.5867 0.3735 28 6 2.1897 2.1368 1.1014 29 6 1.9142 1.7047 2.5185 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.3338 1.7128 -2.1292 36 1 3.1128 4.1052 -1.3963 37 1 3.5469 5.7324 0.0965 38 1 4.5322 6.4979 2.6303 39 1 2.8601 7.0885 2.4768 40 1 3.7923 9.8991 1.9779 41 1 4.8034 8.8279 3.0014 42 1 6.5238 10.2107 2.0402 43 1 5.6218 10.4119 0.4989 44 1 7.2543 6.9348 2.1928 45 1 8.1048 8.5370 2.2799 46 1 9.6664 7.4499 -3.0399 47 1 8.1689 9.5736 -0.1217 48 1 7.3466 8.4276 -1.2655 49 1 0.8810 1.9386 2.7754 50 1 2.0770 0.6308 2.6091 51 1 2.5854 2.2323 3.1963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053649061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:42 Heat of formation + Delta-G solvation = 25.892636 kcal Electronic energy + Delta-G solvation = -30966.104674 eV Core-core repulsion = 26868.380683 eV Total energy + Delta-G solvation = -4097.723991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45197 -39.99694 -38.78021 -36.45985 -34.32794 -34.13224 -32.08795 -31.79377 -31.61692 -29.97813 -28.90182 -27.03099 -26.20773 -24.70177 -24.40193 -23.47492 -22.03741 -21.37650 -21.24570 -19.89817 -18.97070 -18.84085 -17.45861 -16.62673 -16.42729 -16.08249 -15.55144 -15.37952 -14.96002 -14.86417 -14.62852 -14.39298 -13.98172 -13.71956 -13.57883 -13.41281 -13.20674 -12.98302 -12.90034 -12.75361 -12.72244 -12.59803 -12.40757 -12.19905 -12.01303 -11.67526 -11.65545 -11.54203 -11.39206 -11.16062 -11.03381 -10.93802 -10.77379 -10.35358 -9.98185 -9.61354 -9.58419 -9.43617 -8.85262 -8.79269 -8.62243 -8.57354 -8.13767 -6.79608 -5.68246 -2.99146 1.81444 2.43446 2.65006 3.44530 3.49621 3.52333 3.55926 3.78885 4.19119 4.30456 4.52434 4.56146 4.62271 4.75778 4.77900 4.88202 4.89402 5.10730 5.14429 5.16169 5.18174 5.24885 5.34157 5.42752 5.46596 5.50332 5.57465 5.59303 5.62942 5.67624 5.78977 5.82314 5.90990 5.93663 5.95924 6.12040 6.20560 6.24523 6.34254 6.46275 6.64796 6.72552 6.74935 6.78795 7.02530 7.03763 7.18432 7.27693 7.59767 7.85854 7.90528 8.06735 8.60567 9.12098 9.78822 10.71736 11.49816 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.003010 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.501502 B = 9301.146517 C =11491.738204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.020 4.020 5 C -0.161 4.161 6 C -0.234 4.234 7 C 0.592 3.408 8 O -0.562 6.562 9 N -0.714 5.714 10 C 0.117 3.883 11 C 0.064 3.936 12 H 0.081 0.919 13 C -0.144 4.144 14 C -0.137 4.137 15 C 0.059 3.941 16 C 0.104 3.896 17 N -0.603 5.603 18 C -0.210 4.210 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.163 3.837 27 O -0.329 6.329 28 C 0.103 3.897 29 C -0.091 4.091 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.252 0.748 47 H 0.038 0.962 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.303 -7.583 5.020 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.146 4.146 5 C -0.185 4.185 6 C -0.244 4.244 7 C 0.381 3.619 8 O -0.443 6.443 9 N -0.365 5.365 10 C -0.007 4.007 11 C 0.005 3.995 12 H 0.099 0.901 13 C -0.182 4.182 14 C -0.176 4.176 15 C 0.018 3.982 16 C -0.022 4.022 17 N -0.328 5.328 18 C -0.337 4.337 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.037 3.963 27 O -0.247 6.247 28 C -0.014 4.014 29 C -0.149 4.149 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.250 -8.338 5.459 22.570 hybrid contribution 0.891 -0.444 -0.842 1.304 sum -19.360 -8.782 4.617 21.754 Atomic orbital electron populations 1.22165 0.94282 1.02955 1.03345 1.21869 0.95581 0.80648 1.04492 1.43706 1.50568 1.11878 1.05870 1.21660 1.08388 0.93308 0.91206 1.22082 1.05647 0.97405 0.93372 1.20113 1.15802 0.94924 0.93518 1.17316 0.76055 0.81677 0.86825 1.90692 1.55595 1.83014 1.15002 1.45604 1.66694 1.12867 1.11297 1.21729 1.00121 0.85771 0.93109 1.23055 0.89626 0.93017 0.93805 0.90140 1.23056 0.98641 0.96814 0.99685 1.22970 0.96098 0.98111 1.00371 1.23324 0.88010 0.87660 0.99157 1.22765 0.90799 0.97124 0.91561 1.45464 1.49288 1.31151 1.06892 1.18949 1.14546 1.04995 0.95254 0.90210 1.24751 1.00575 0.99072 0.96118 1.69831 1.46435 1.36108 1.04431 0.86049 0.80774 0.80675 0.78326 1.20503 1.21720 1.21833 1.22080 0.85991 0.90406 0.97803 1.88396 1.16466 1.56589 1.63286 1.20245 1.01187 0.90669 0.89270 1.20538 1.03494 1.00789 0.90030 0.90732 0.91756 0.91757 0.88958 0.89264 0.81736 0.83534 0.75955 0.91154 0.91098 0.90338 0.90346 0.89990 0.90366 0.93887 0.94262 0.93823 0.94431 0.90404 0.90798 0.92194 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.10 0.62 6.46 -4.04 -0.03 0.59 16 3 N -0.44 -4.62 2.69 -112.52 -0.30 -4.92 16 4 C -0.02 -0.22 11.33 -16.82 -0.19 -0.41 16 5 C -0.16 -2.10 10.56 -37.50 -0.40 -2.50 16 6 C -0.23 -3.49 6.29 -103.35 -0.65 -4.14 16 7 C 0.59 9.89 7.81 -12.59 -0.10 9.79 16 8 O -0.56 -10.51 14.81 5.25 0.08 -10.43 16 9 N -0.71 -11.06 5.47 -61.44 -0.34 -11.40 16 10 C 0.12 1.71 5.24 -4.05 -0.02 1.69 16 11 C 0.06 0.91 3.61 -25.96 -0.09 0.81 16 12 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.14 -1.74 6.56 -24.63 -0.16 -1.90 16 14 C -0.14 -1.96 6.49 -24.94 -0.16 -2.12 16 15 C 0.06 1.16 1.55 -90.81 -0.14 1.02 16 16 C 0.10 2.27 8.25 -7.87 -0.06 2.21 16 17 N -0.60 -16.30 3.79 -184.97 -0.70 -17.00 16 18 C -0.21 -6.19 10.74 -15.06 -0.16 -6.36 16 19 H 0.08 2.30 7.83 -52.48 -0.41 1.88 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -28.09 11.52 55.49 0.64 -27.45 16 22 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.16 3.95 6.95 -7.88 -0.05 3.90 16 27 O -0.33 -6.40 10.68 -35.23 -0.38 -6.78 16 28 C 0.10 1.32 6.89 -81.89 -0.56 0.76 16 29 C -0.09 -0.99 9.51 36.00 0.34 -0.65 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.46 8.11 -51.93 -0.42 0.03 16 34 H 0.09 0.50 7.04 -51.93 -0.37 0.13 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.15 1.77 7.70 -52.48 -0.40 1.36 16 37 H 0.41 6.00 7.52 -40.82 -0.31 5.69 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 42 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 48 H 0.08 2.13 7.17 -51.93 -0.37 1.75 16 49 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 50 H 0.06 0.50 7.02 -51.93 -0.36 0.13 16 51 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16 LS Contribution 412.34 15.07 6.21 6.21 Total: -1.00 -36.55 412.34 -10.39 -46.94 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.42 Total: 5.11 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.16 Total: 1.79 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.70 Total: -60.77 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.30 Total: -17.21 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.55 -10.39 -46.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053649061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.837 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds