Wall clock time and date at job start Wed Apr 1 2020 05:34:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46500 * 109.46948 * 2 1
4 4 C 1.36447 * 124.84769 * 264.97246 * 3 2 1
5 5 C 1.34486 * 108.85297 * 180.02562 * 4 3 2
6 6 C 1.46684 * 106.33513 * 0.02562 * 5 4 3
7 7 C 1.47264 * 126.94334 * 180.02562 * 6 5 4
8 8 O 1.21629 * 119.99840 * 180.02562 * 7 6 5
9 9 N 1.34779 * 120.00142 * 0.02562 * 7 6 5
10 10 C 1.46490 * 120.00203 * 180.02562 * 9 7 6
11 11 C 1.52999 * 109.47474 * 180.02562 * 10 9 7
12 12 H 1.08997 * 109.82319 * 59.43096 * 11 10 9
13 13 C 1.54471 * 109.91343 * 180.37932 * 11 10 9
14 14 C 1.55499 * 102.39227 * 140.91823 * 13 11 10
15 15 C 1.53881 * 100.76022 * 327.03014 * 14 13 11
16 16 C 1.52378 * 115.67687 * 263.23651 * 15 14 13
17 17 N 1.47276 * 87.70244 * 218.74148 * 16 15 14
18 18 C 1.36936 * 135.93576 * 205.92145 * 17 16 15
19 19 H 1.08005 * 119.99952 * 359.97438 * 18 17 16
20 20 C 1.38811 * 119.99801 * 180.02562 * 18 17 16
21 21 N 1.31614 * 120.00324 * 359.97438 * 20 18 17
22 22 Si 1.86802 * 119.99953 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.47114 * 359.97438 * 22 20 18
24 24 H 1.48498 * 109.47387 * 119.99569 * 22 20 18
25 25 H 1.48498 * 109.47340 * 239.99917 * 22 20 18
26 26 C 1.47273 * 88.12953 * 26.17582 * 17 16 15
27 27 O 1.42413 * 106.67075 * 34.96969 * 15 14 13
28 28 C 1.34658 * 124.85157 * 85.31122 * 3 2 1
29 29 C 1.50697 * 125.80211 * 0.02562 * 28 3 2
30 30 H 1.08993 * 109.47059 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.46839 * 299.99758 * 1 2 3
32 32 H 1.08996 * 109.47226 * 59.99632 * 1 2 3
33 33 H 1.08991 * 109.46970 * 239.99611 * 2 1 3
34 34 H 1.09000 * 109.46869 * 120.00034 * 2 1 3
35 35 H 1.08000 * 125.57600 * 0.02562 * 4 3 2
36 36 H 1.08005 * 126.83091 * 179.97438 * 5 4 3
37 37 H 0.97001 * 119.99516 * 0.02562 * 9 7 6
38 38 H 1.09003 * 109.47433 * 59.99569 * 10 9 7
39 39 H 1.09000 * 109.47239 * 299.99952 * 10 9 7
40 40 H 1.09003 * 110.81511 * 259.14403 * 13 11 10
41 41 H 1.08997 * 110.82218 * 22.49347 * 13 11 10
42 42 H 1.08997 * 111.16294 * 209.14843 * 14 13 11
43 43 H 1.09004 * 111.15839 * 84.90192 * 14 13 11
44 44 H 1.09001 * 113.51593 * 104.03916 * 16 15 14
45 45 H 1.08996 * 113.51236 * 333.44916 * 16 15 14
46 46 H 0.97007 * 120.00452 * 180.02562 * 21 20 18
47 47 H 1.08999 * 113.51652 * 88.52643 * 26 17 16
48 48 H 1.08999 * 113.51521 * 219.11206 * 26 17 16
49 49 H 1.09008 * 109.47049 * 270.18707 * 29 28 3
50 50 H 1.08997 * 109.47560 * 30.18855 * 29 28 3
51 51 H 1.09006 * 109.47287 * 150.18768 * 29 28 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3707 2.0836 -1.1155
5 6 2.7716 3.3131 -0.7463
6 6 2.6542 3.3638 0.7150
7 6 2.9760 4.5040 1.5897
8 8 2.8308 4.4069 2.7934
9 7 3.4315 5.6550 1.0565
10 6 3.7522 6.7889 1.9267
11 6 4.2437 7.9617 1.0759
12 1 3.4712 8.2510 0.3635
13 6 4.5940 9.1606 1.9848
14 6 5.8745 9.7284 1.3096
15 6 6.5110 8.4361 0.7683
16 6 7.5914 7.8148 1.6450
17 7 8.3252 7.4924 0.4095
18 6 9.2455 6.5526 0.0285
19 1 9.5880 5.8136 0.7377
20 6 9.7389 6.5506 -1.2690
21 7 9.3219 7.4516 -2.1331
22 14 10.9947 5.2691 -1.7887
23 1 11.2968 4.3777 -0.6400
24 1 10.4460 4.4642 -2.9094
25 1 12.2403 5.9469 -2.2295
26 6 7.6416 8.6264 -0.2352
27 8 5.4383 7.5867 0.3735
28 6 2.1897 2.1368 1.1014
29 6 1.9142 1.7047 2.5185
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8899
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 2.3338 1.7128 -2.1292
36 1 3.1128 4.1052 -1.3963
37 1 3.5469 5.7324 0.0965
38 1 4.5322 6.4979 2.6303
39 1 2.8601 7.0885 2.4768
40 1 3.7923 9.8991 1.9779
41 1 4.8034 8.8279 3.0014
42 1 6.5238 10.2107 2.0402
43 1 5.6218 10.4119 0.4989
44 1 7.2543 6.9348 2.1928
45 1 8.1048 8.5370 2.2799
46 1 9.6664 7.4499 -3.0399
47 1 8.1689 9.5736 -0.1217
48 1 7.3466 8.4276 -1.2655
49 1 0.8810 1.9386 2.7754
50 1 2.0770 0.6308 2.6091
51 1 2.5854 2.2323 3.1963
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053649061.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:42
Heat of formation + Delta-G solvation = 25.892636 kcal
Electronic energy + Delta-G solvation = -30966.104674 eV
Core-core repulsion = 26868.380683 eV
Total energy + Delta-G solvation = -4097.723991 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.45197 -39.99694 -38.78021 -36.45985 -34.32794 -34.13224 -32.08795 -31.79377
-31.61692 -29.97813 -28.90182 -27.03099 -26.20773 -24.70177 -24.40193 -23.47492
-22.03741 -21.37650 -21.24570 -19.89817 -18.97070 -18.84085 -17.45861 -16.62673
-16.42729 -16.08249 -15.55144 -15.37952 -14.96002 -14.86417 -14.62852 -14.39298
-13.98172 -13.71956 -13.57883 -13.41281 -13.20674 -12.98302 -12.90034 -12.75361
-12.72244 -12.59803 -12.40757 -12.19905 -12.01303 -11.67526 -11.65545 -11.54203
-11.39206 -11.16062 -11.03381 -10.93802 -10.77379 -10.35358 -9.98185 -9.61354
-9.58419 -9.43617 -8.85262 -8.79269 -8.62243 -8.57354 -8.13767 -6.79608
-5.68246 -2.99146 1.81444 2.43446 2.65006 3.44530 3.49621 3.52333
3.55926 3.78885 4.19119 4.30456 4.52434 4.56146 4.62271 4.75778
4.77900 4.88202 4.89402 5.10730 5.14429 5.16169 5.18174 5.24885
5.34157 5.42752 5.46596 5.50332 5.57465 5.59303 5.62942 5.67624
5.78977 5.82314 5.90990 5.93663 5.95924 6.12040 6.20560 6.24523
6.34254 6.46275 6.64796 6.72552 6.74935 6.78795 7.02530 7.03763
7.18432 7.27693 7.59767 7.85854 7.90528 8.06735 8.60567 9.12098
9.78822 10.71736 11.49816
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009231 B = 0.003010 C = 0.002436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3032.501502 B = 9301.146517 C =11491.738204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.096 3.904
3 N -0.443 5.443
4 C -0.020 4.020
5 C -0.161 4.161
6 C -0.234 4.234
7 C 0.592 3.408
8 O -0.562 6.562
9 N -0.714 5.714
10 C 0.117 3.883
11 C 0.064 3.936
12 H 0.081 0.919
13 C -0.144 4.144
14 C -0.137 4.137
15 C 0.059 3.941
16 C 0.104 3.896
17 N -0.603 5.603
18 C -0.210 4.210
19 H 0.080 0.920
20 C -0.009 4.009
21 N -0.920 5.920
22 Si 0.911 3.089
23 H -0.280 1.280
24 H -0.290 1.290
25 H -0.291 1.291
26 C 0.163 3.837
27 O -0.329 6.329
28 C 0.103 3.897
29 C -0.091 4.091
30 H 0.074 0.926
31 H 0.063 0.937
32 H 0.063 0.937
33 H 0.092 0.908
34 H 0.089 0.911
35 H 0.165 0.835
36 H 0.147 0.853
37 H 0.405 0.595
38 H 0.070 0.930
39 H 0.071 0.929
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.081 0.919
43 H 0.078 0.922
44 H 0.043 0.957
45 H 0.040 0.960
46 H 0.252 0.748
47 H 0.038 0.962
48 H 0.078 0.922
49 H 0.073 0.927
50 H 0.059 0.941
51 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.303 -7.583 5.020 22.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.026 4.026
3 N -0.120 5.120
4 C -0.146 4.146
5 C -0.185 4.185
6 C -0.244 4.244
7 C 0.381 3.619
8 O -0.443 6.443
9 N -0.365 5.365
10 C -0.007 4.007
11 C 0.005 3.995
12 H 0.099 0.901
13 C -0.182 4.182
14 C -0.176 4.176
15 C 0.018 3.982
16 C -0.022 4.022
17 N -0.328 5.328
18 C -0.337 4.337
19 H 0.098 0.902
20 C -0.205 4.205
21 N -0.568 5.568
22 Si 0.742 3.258
23 H -0.205 1.205
24 H -0.217 1.217
25 H -0.218 1.218
26 C 0.037 3.963
27 O -0.247 6.247
28 C -0.014 4.014
29 C -0.149 4.149
30 H 0.093 0.907
31 H 0.082 0.918
32 H 0.082 0.918
33 H 0.110 0.890
34 H 0.107 0.893
35 H 0.183 0.817
36 H 0.165 0.835
37 H 0.240 0.760
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.097 0.903
41 H 0.097 0.903
42 H 0.100 0.900
43 H 0.096 0.904
44 H 0.061 0.939
45 H 0.057 0.943
46 H 0.062 0.938
47 H 0.056 0.944
48 H 0.096 0.904
49 H 0.092 0.908
50 H 0.078 0.922
51 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -20.250 -8.338 5.459 22.570
hybrid contribution 0.891 -0.444 -0.842 1.304
sum -19.360 -8.782 4.617 21.754
Atomic orbital electron populations
1.22165 0.94282 1.02955 1.03345 1.21869 0.95581 0.80648 1.04492
1.43706 1.50568 1.11878 1.05870 1.21660 1.08388 0.93308 0.91206
1.22082 1.05647 0.97405 0.93372 1.20113 1.15802 0.94924 0.93518
1.17316 0.76055 0.81677 0.86825 1.90692 1.55595 1.83014 1.15002
1.45604 1.66694 1.12867 1.11297 1.21729 1.00121 0.85771 0.93109
1.23055 0.89626 0.93017 0.93805 0.90140 1.23056 0.98641 0.96814
0.99685 1.22970 0.96098 0.98111 1.00371 1.23324 0.88010 0.87660
0.99157 1.22765 0.90799 0.97124 0.91561 1.45464 1.49288 1.31151
1.06892 1.18949 1.14546 1.04995 0.95254 0.90210 1.24751 1.00575
0.99072 0.96118 1.69831 1.46435 1.36108 1.04431 0.86049 0.80774
0.80675 0.78326 1.20503 1.21720 1.21833 1.22080 0.85991 0.90406
0.97803 1.88396 1.16466 1.56589 1.63286 1.20245 1.01187 0.90669
0.89270 1.20538 1.03494 1.00789 0.90030 0.90732 0.91756 0.91757
0.88958 0.89264 0.81736 0.83534 0.75955 0.91154 0.91098 0.90338
0.90346 0.89990 0.90366 0.93887 0.94262 0.93823 0.94431 0.90404
0.90798 0.92194 0.88088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16
2 C 0.10 0.62 6.46 -4.04 -0.03 0.59 16
3 N -0.44 -4.62 2.69 -112.52 -0.30 -4.92 16
4 C -0.02 -0.22 11.33 -16.82 -0.19 -0.41 16
5 C -0.16 -2.10 10.56 -37.50 -0.40 -2.50 16
6 C -0.23 -3.49 6.29 -103.35 -0.65 -4.14 16
7 C 0.59 9.89 7.81 -12.59 -0.10 9.79 16
8 O -0.56 -10.51 14.81 5.25 0.08 -10.43 16
9 N -0.71 -11.06 5.47 -61.44 -0.34 -11.40 16
10 C 0.12 1.71 5.24 -4.05 -0.02 1.69 16
11 C 0.06 0.91 3.61 -25.96 -0.09 0.81 16
12 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
13 C -0.14 -1.74 6.56 -24.63 -0.16 -1.90 16
14 C -0.14 -1.96 6.49 -24.94 -0.16 -2.12 16
15 C 0.06 1.16 1.55 -90.81 -0.14 1.02 16
16 C 0.10 2.27 8.25 -7.87 -0.06 2.21 16
17 N -0.60 -16.30 3.79 -184.97 -0.70 -17.00 16
18 C -0.21 -6.19 10.74 -15.06 -0.16 -6.36 16
19 H 0.08 2.30 7.83 -52.48 -0.41 1.88 16
20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16
21 N -0.92 -28.09 11.52 55.49 0.64 -27.45 16
22 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16
23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
26 C 0.16 3.95 6.95 -7.88 -0.05 3.90 16
27 O -0.33 -6.40 10.68 -35.23 -0.38 -6.78 16
28 C 0.10 1.32 6.89 -81.89 -0.56 0.76 16
29 C -0.09 -0.99 9.51 36.00 0.34 -0.65 16
30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.09 0.46 8.11 -51.93 -0.42 0.03 16
34 H 0.09 0.50 7.04 -51.93 -0.37 0.13 16
35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16
36 H 0.15 1.77 7.70 -52.48 -0.40 1.36 16
37 H 0.41 6.00 7.52 -40.82 -0.31 5.69 16
38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16
42 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16
43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
45 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16
46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16
47 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16
48 H 0.08 2.13 7.17 -51.93 -0.37 1.75 16
49 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16
50 H 0.06 0.50 7.02 -51.93 -0.36 0.13 16
51 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16
LS Contribution 412.34 15.07 6.21 6.21
Total: -1.00 -36.55 412.34 -10.39 -46.94
By element:
Atomic # 1 Polarization: 13.53 SS G_CDS: -8.42 Total: 5.11 kcal
Atomic # 6 Polarization: 3.95 SS G_CDS: -2.16 Total: 1.79 kcal
Atomic # 7 Polarization: -60.07 SS G_CDS: -0.70 Total: -60.77 kcal
Atomic # 8 Polarization: -16.91 SS G_CDS: -0.30 Total: -17.21 kcal
Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -36.55 -10.39 -46.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053649061.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.837 kcal
(2) G-P(sol) polarization free energy of solvation -36.554 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.893 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds