Wall clock time and date at job start Wed Apr 1 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47033 * 2 1 4 4 C 1.36445 * 124.84968 * 90.03027 * 3 2 1 5 5 C 1.50703 * 125.57078 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85463 * 180.24121 * 4 3 2 7 7 C 1.46686 * 106.33418 * 359.60229 * 6 4 3 8 8 C 1.47260 * 126.94211 * 180.13446 * 7 6 4 9 9 O 1.21628 * 120.00043 * 180.31229 * 8 7 6 10 10 N 1.34777 * 120.00203 * 0.31447 * 8 7 6 11 11 C 1.46495 * 120.00043 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.73268 * 34.29652 * 11 10 8 13 13 C 1.54462 * 110.82574 * 270.87784 * 11 10 8 14 14 O 1.43529 * 107.57814 * 220.41253 * 13 11 10 15 15 C 1.42541 * 109.63616 * 359.36607 * 14 13 11 16 16 C 1.52953 * 116.16077 * 253.33440 * 15 14 13 17 17 N 1.47772 * 85.80246 * 218.94081 * 16 15 14 18 18 C 1.36937 * 134.40918 * 203.93223 * 17 16 15 19 19 H 1.07998 * 119.99829 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99685 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47273 * 89.99624 * 22 20 18 24 24 H 1.48494 * 109.47121 * 210.00056 * 22 20 18 25 25 H 1.48507 * 109.46784 * 329.99566 * 22 20 18 26 26 C 1.47771 * 91.18384 * 23.92020 * 17 16 15 27 27 C 1.54272 * 106.60598 * 22.89356 * 15 14 13 28 28 C 1.34658 * 124.85387 * 270.00360 * 3 2 1 29 29 C 1.50709 * 125.79852 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46921 * 299.99766 * 1 2 3 32 32 H 1.09003 * 109.47416 * 59.99863 * 1 2 3 33 33 H 1.09003 * 109.46484 * 240.00517 * 2 1 3 34 34 H 1.08994 * 109.46962 * 120.00797 * 2 1 3 35 35 H 1.09002 * 109.47152 * 90.00110 * 5 4 3 36 36 H 1.09001 * 109.46980 * 330.00210 * 5 4 3 37 37 H 1.09004 * 109.47113 * 210.00191 * 5 4 3 38 38 H 1.08007 * 126.82845 * 179.73777 * 6 4 3 39 39 H 0.97003 * 119.99651 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.83605 * 339.92382 * 13 11 10 41 41 H 1.08998 * 109.83078 * 100.81262 * 13 11 10 42 42 H 1.08998 * 113.81977 * 333.16787 * 16 15 14 43 43 H 1.08998 * 113.81943 * 104.72083 * 16 15 14 44 44 H 0.97000 * 119.99717 * 180.02562 * 21 20 18 45 45 H 1.09001 * 113.82195 * 221.85397 * 26 17 16 46 46 H 1.09003 * 113.92706 * 90.30829 * 26 17 16 47 47 H 1.09005 * 111.32881 * 207.20034 * 27 15 14 48 48 H 1.09000 * 111.08500 * 82.88898 * 27 15 14 49 49 H 1.08995 * 109.47087 * 90.00334 * 29 28 3 50 50 H 1.09000 * 109.46631 * 209.99932 * 29 28 3 51 51 H 1.08998 * 109.47357 * 330.00369 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1161 1.1197 5 6 2.1107 1.6399 2.5396 6 6 2.7045 3.3368 0.7492 7 6 2.7125 3.3432 -0.7177 8 6 3.1063 4.4579 -1.5957 9 8 3.0589 4.3264 -2.8039 10 7 3.5192 5.6239 -1.0605 11 6 3.9104 6.7330 -1.9340 12 1 3.3038 6.7434 -2.8395 13 6 5.4136 6.6551 -2.2808 14 8 5.9372 7.9908 -2.2418 15 6 4.8935 8.9052 -1.9154 16 6 4.3820 9.7811 -3.0602 17 7 4.3021 10.8605 -2.0541 18 6 3.5743 12.0151 -1.9431 19 1 3.7032 12.6540 -1.0820 20 6 2.6708 12.3642 -2.9375 21 7 2.5141 11.5858 -3.9871 22 14 1.6773 13.9389 -2.7858 23 1 2.4233 15.0575 -3.4162 24 1 0.3706 13.7676 -3.4699 25 1 1.4484 14.2433 -1.3504 26 6 5.3213 10.1959 -1.2155 27 6 3.8068 8.0907 -1.1836 28 6 2.2748 2.1068 -1.1050 29 6 2.1078 1.6363 -2.5270 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.0389 1.1822 2.8817 36 1 1.3059 0.9061 2.5838 37 1 1.8655 2.4870 3.1804 38 1 2.9866 4.1498 1.4018 39 1 3.5567 5.7289 -0.0969 40 1 5.9302 6.0338 -1.5492 41 1 5.5416 6.2352 -3.2785 42 1 5.1209 9.9608 -3.8411 43 1 3.4129 9.4719 -3.4519 44 1 1.8830 11.8300 -4.6821 45 1 5.0946 10.2146 -0.1494 46 1 6.3441 10.4996 -1.4388 47 1 2.8212 8.5380 -1.3135 48 1 4.0480 7.9756 -0.1268 49 1 1.0988 1.8658 -2.8695 50 1 2.8320 2.1431 -3.1648 51 1 2.2717 0.5597 -2.5752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053863702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:11 Heat of formation + Delta-G solvation = 20.315655 kcal Electronic energy + Delta-G solvation = -30757.943544 eV Core-core repulsion = 26659.977717 eV Total energy + Delta-G solvation = -4097.965827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74737 -40.01464 -38.70983 -36.14715 -34.50839 -34.28868 -32.89574 -32.03258 -30.56806 -29.57059 -29.10687 -27.96891 -25.72337 -25.17089 -24.84728 -24.09451 -22.32329 -21.92349 -21.03323 -20.08764 -18.89819 -18.63104 -17.20552 -16.72155 -16.22576 -16.16860 -15.61287 -15.27205 -15.11126 -14.93369 -14.59910 -14.28041 -14.14574 -13.76522 -13.67855 -13.55843 -13.42122 -13.27655 -13.12689 -12.79382 -12.75458 -12.65900 -12.49389 -12.35894 -11.95977 -11.84438 -11.75096 -11.61248 -11.51318 -11.27925 -11.01419 -10.87488 -10.77118 -10.63801 -10.22084 -9.95125 -9.69482 -9.51179 -8.95731 -8.77205 -8.72532 -8.64717 -8.16012 -6.86525 -5.73632 -3.06668 1.66239 2.16543 2.46663 3.39813 3.42022 3.46092 3.48627 3.60599 4.16758 4.32137 4.36401 4.47489 4.54527 4.57625 4.65956 4.77156 4.84978 5.03339 5.05409 5.07813 5.17901 5.21397 5.25568 5.31619 5.35220 5.39400 5.45186 5.46718 5.49527 5.52371 5.58276 5.60835 5.68110 5.84287 6.02121 6.08056 6.14224 6.29567 6.41863 6.45683 6.59602 6.63114 6.69927 6.79354 6.89873 7.02795 7.11062 7.27797 7.56387 7.72041 7.79533 8.00019 8.46361 9.06930 9.72855 10.61414 11.43442 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.002166 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.626795 B =12926.106092 C =13244.218208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.009 3.991 5 C -0.083 4.083 6 C -0.165 4.165 7 C -0.233 4.233 8 C 0.592 3.408 9 O -0.549 6.549 10 N -0.714 5.714 11 C 0.115 3.885 12 H 0.106 0.894 13 C 0.046 3.954 14 O -0.370 6.370 15 C 0.056 3.944 16 C 0.157 3.843 17 N -0.605 5.605 18 C -0.221 4.221 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.129 3.871 27 C -0.120 4.120 28 C 0.107 3.893 29 C -0.093 4.093 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.400 0.600 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.254 0.746 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.102 0.898 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -27.354 12.100 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.141 4.141 6 C -0.189 4.189 7 C -0.242 4.242 8 C 0.381 3.619 9 O -0.428 6.428 10 N -0.365 5.365 11 C 0.009 3.991 12 H 0.124 0.876 13 C -0.032 4.032 14 O -0.287 6.287 15 C 0.016 3.984 16 C 0.031 3.969 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 C -0.159 4.159 28 C -0.009 4.009 29 C -0.151 4.151 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.117 0.883 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.121 0.879 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.087 -27.486 11.125 29.726 hybrid contribution -0.643 0.907 0.532 1.233 sum -2.730 -26.579 11.657 29.151 Atomic orbital electron populations 1.22170 0.94125 1.03054 1.03470 1.21867 0.95750 0.80699 1.04448 1.43635 1.50978 1.11862 1.05101 1.20160 1.08444 0.92593 0.88609 1.20324 1.02010 1.02020 0.89735 1.21780 1.07193 0.96773 0.93117 1.20067 1.16129 0.94909 0.93119 1.17362 0.75923 0.81560 0.87074 1.90742 1.55262 1.82207 1.14631 1.45691 1.67885 1.12855 1.10023 1.22585 0.95865 0.85522 0.95079 0.87565 1.23455 0.93033 0.85457 1.01290 1.88296 1.34013 1.15199 1.91232 1.24213 0.86655 0.88921 0.98636 1.22556 0.99191 0.84288 0.90844 1.45722 1.42580 1.23955 1.21083 1.18962 1.14447 0.96811 1.04635 0.90102 1.24804 1.00043 0.98958 0.96627 1.69826 1.38622 1.37730 1.10377 0.86113 0.79423 0.82792 0.77382 1.21604 1.21639 1.20615 1.22549 0.93734 0.88187 0.95220 1.22998 1.01343 0.92754 0.98761 1.20263 1.00491 0.91026 0.89114 1.20574 1.04402 1.00488 0.89598 0.90640 0.91764 0.91611 0.89038 0.89122 0.91139 0.91909 0.90019 0.83809 0.76561 0.91829 0.91217 0.94740 0.90584 0.93561 0.93341 0.93935 0.88332 0.90634 0.90520 0.87939 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.09 0.48 6.09 -4.04 -0.02 0.45 16 3 N -0.44 -3.81 2.69 -107.96 -0.29 -4.10 16 4 C 0.01 0.08 6.85 -81.86 -0.56 -0.48 16 5 C -0.08 -0.45 9.81 36.01 0.35 -0.10 16 6 C -0.16 -1.71 10.45 -37.50 -0.39 -2.10 16 7 C -0.23 -2.97 6.29 -103.35 -0.65 -3.62 16 8 C 0.59 8.91 7.81 -12.59 -0.10 8.81 16 9 O -0.55 -9.85 14.50 5.25 0.08 -9.77 16 10 N -0.71 -9.79 5.12 -52.92 -0.27 -10.06 16 11 C 0.11 1.85 3.32 -65.85 -0.22 1.64 16 12 H 0.11 1.95 7.62 -51.93 -0.40 1.55 16 13 C 0.05 0.76 7.58 37.92 0.29 1.05 16 14 O -0.37 -7.20 11.17 -35.23 -0.39 -7.60 16 15 C 0.06 1.15 1.48 -90.16 -0.13 1.01 16 16 C 0.16 3.90 6.98 -3.37 -0.02 3.88 16 17 N -0.60 -15.88 3.69 -183.20 -0.68 -16.56 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -27.65 11.40 55.49 0.63 -27.02 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.13 2.80 8.49 -3.38 -0.03 2.77 16 27 C -0.12 -2.08 6.05 -24.75 -0.15 -2.23 16 28 C 0.11 1.20 6.89 -81.88 -0.56 0.63 16 29 C -0.09 -0.91 9.52 36.01 0.34 -0.57 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.38 6.88 -51.93 -0.36 0.02 16 34 H 0.09 0.32 7.52 -51.93 -0.39 -0.07 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.27 7.60 -51.93 -0.39 -0.13 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.14 1.21 7.70 -52.48 -0.40 0.81 16 39 H 0.40 4.49 7.65 -40.82 -0.31 4.17 16 40 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 2.04 7.16 -51.93 -0.37 1.67 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.10 1.90 8.05 -51.93 -0.42 1.49 16 48 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 1.22 6.47 -51.93 -0.34 0.89 16 51 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -34.76 410.57 -9.84 -44.60 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.34 Total: 2.98 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.74 Total: 4.03 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.60 Total: -57.74 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.32 Total: -17.37 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.76 -9.84 -44.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053863702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.911 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds