Wall clock time and date at job start Wed Apr 1 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47033 * 2 1 4 4 C 1.36445 * 124.84968 * 90.03027 * 3 2 1 5 5 C 1.50703 * 125.57078 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85463 * 180.24121 * 4 3 2 7 7 C 1.46686 * 106.33418 * 359.60229 * 6 4 3 8 8 C 1.47260 * 126.94211 * 180.13446 * 7 6 4 9 9 O 1.21628 * 120.00043 * 180.31229 * 8 7 6 10 10 N 1.34777 * 120.00203 * 0.31447 * 8 7 6 11 11 C 1.46495 * 120.00043 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.73268 * 34.29652 * 11 10 8 13 13 C 1.54462 * 110.82574 * 270.87784 * 11 10 8 14 14 O 1.43529 * 107.57814 * 220.41253 * 13 11 10 15 15 C 1.42541 * 109.63616 * 359.36607 * 14 13 11 16 16 C 1.52953 * 116.16077 * 253.33440 * 15 14 13 17 17 N 1.47772 * 85.80246 * 218.94081 * 16 15 14 18 18 C 1.36937 * 134.40918 * 203.93223 * 17 16 15 19 19 H 1.07998 * 119.99829 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99685 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47273 * 89.99624 * 22 20 18 24 24 H 1.48494 * 109.47121 * 210.00056 * 22 20 18 25 25 H 1.48507 * 109.46784 * 329.99566 * 22 20 18 26 26 C 1.47771 * 91.18384 * 23.92020 * 17 16 15 27 27 C 1.54272 * 106.60598 * 22.89356 * 15 14 13 28 28 C 1.34658 * 124.85387 * 270.00360 * 3 2 1 29 29 C 1.50709 * 125.79852 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46921 * 299.99766 * 1 2 3 32 32 H 1.09003 * 109.47416 * 59.99863 * 1 2 3 33 33 H 1.09003 * 109.46484 * 240.00517 * 2 1 3 34 34 H 1.08994 * 109.46962 * 120.00797 * 2 1 3 35 35 H 1.09002 * 109.47152 * 90.00110 * 5 4 3 36 36 H 1.09001 * 109.46980 * 330.00210 * 5 4 3 37 37 H 1.09004 * 109.47113 * 210.00191 * 5 4 3 38 38 H 1.08007 * 126.82845 * 179.73777 * 6 4 3 39 39 H 0.97003 * 119.99651 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.83605 * 339.92382 * 13 11 10 41 41 H 1.08998 * 109.83078 * 100.81262 * 13 11 10 42 42 H 1.08998 * 113.81977 * 333.16787 * 16 15 14 43 43 H 1.08998 * 113.81943 * 104.72083 * 16 15 14 44 44 H 0.97000 * 119.99717 * 180.02562 * 21 20 18 45 45 H 1.09001 * 113.82195 * 221.85397 * 26 17 16 46 46 H 1.09003 * 113.92706 * 90.30829 * 26 17 16 47 47 H 1.09005 * 111.32881 * 207.20034 * 27 15 14 48 48 H 1.09000 * 111.08500 * 82.88898 * 27 15 14 49 49 H 1.08995 * 109.47087 * 90.00334 * 29 28 3 50 50 H 1.09000 * 109.46631 * 209.99932 * 29 28 3 51 51 H 1.08998 * 109.47357 * 330.00369 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1161 1.1197 5 6 2.1107 1.6399 2.5396 6 6 2.7045 3.3368 0.7492 7 6 2.7125 3.3432 -0.7177 8 6 3.1063 4.4579 -1.5957 9 8 3.0589 4.3264 -2.8039 10 7 3.5192 5.6239 -1.0605 11 6 3.9104 6.7330 -1.9340 12 1 3.3038 6.7434 -2.8395 13 6 5.4136 6.6551 -2.2808 14 8 5.9372 7.9908 -2.2418 15 6 4.8935 8.9052 -1.9154 16 6 4.3820 9.7811 -3.0602 17 7 4.3021 10.8605 -2.0541 18 6 3.5743 12.0151 -1.9431 19 1 3.7032 12.6540 -1.0820 20 6 2.6708 12.3642 -2.9375 21 7 2.5141 11.5858 -3.9871 22 14 1.6773 13.9389 -2.7858 23 1 2.4233 15.0575 -3.4162 24 1 0.3706 13.7676 -3.4699 25 1 1.4484 14.2433 -1.3504 26 6 5.3213 10.1959 -1.2155 27 6 3.8068 8.0907 -1.1836 28 6 2.2748 2.1068 -1.1050 29 6 2.1078 1.6363 -2.5270 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.0389 1.1822 2.8817 36 1 1.3059 0.9061 2.5838 37 1 1.8655 2.4870 3.1804 38 1 2.9866 4.1498 1.4018 39 1 3.5567 5.7289 -0.0969 40 1 5.9302 6.0338 -1.5492 41 1 5.5416 6.2352 -3.2785 42 1 5.1209 9.9608 -3.8411 43 1 3.4129 9.4719 -3.4519 44 1 1.8830 11.8300 -4.6821 45 1 5.0946 10.2146 -0.1494 46 1 6.3441 10.4996 -1.4388 47 1 2.8212 8.5380 -1.3135 48 1 4.0480 7.9756 -0.1268 49 1 1.0988 1.8658 -2.8695 50 1 2.8320 2.1431 -3.1648 51 1 2.2717 0.5597 -2.5752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053863702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:10 Heat of formation + Delta-G solvation = -2.268709 kcal Electronic energy + Delta-G solvation = -30758.922875 eV Core-core repulsion = 26659.977717 eV Total energy + Delta-G solvation = -4098.945159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47833 -41.54118 -40.01261 -37.87017 -35.68892 -34.98387 -34.13629 -33.57608 -31.79167 -30.31275 -30.03305 -29.54835 -27.49713 -26.73434 -25.96420 -24.66914 -23.90303 -23.16868 -22.19191 -21.14598 -20.31308 -19.66875 -18.75910 -18.13716 -17.50663 -17.21018 -16.87695 -16.49628 -16.39374 -16.30446 -15.79723 -15.57826 -15.44987 -15.24603 -14.56917 -14.36836 -14.35417 -14.19204 -14.08863 -14.00936 -13.73220 -13.66584 -13.47501 -13.31883 -13.17280 -12.88127 -12.86317 -12.81956 -12.69036 -12.59953 -12.48118 -12.33665 -12.24405 -12.10781 -11.99004 -11.76403 -11.49559 -10.92856 -10.83891 -10.34966 -10.15006 -9.52476 -8.98016 -8.91709 -7.91103 -5.26686 0.73864 1.45178 1.45976 1.48823 1.57471 1.79636 2.28344 2.44470 2.54816 2.86141 3.21190 3.35544 3.54396 3.70822 3.75615 3.78366 3.79929 3.88381 4.03022 4.07119 4.10629 4.14872 4.29059 4.38725 4.51105 4.63149 4.66256 4.68428 4.69492 4.75707 4.77135 4.82386 4.84277 4.84998 4.89551 4.92957 4.95865 5.04286 5.07200 5.14152 5.15569 5.21473 5.25629 5.34331 5.46897 5.51049 5.85976 5.86184 6.15388 6.16519 6.38483 6.66121 6.88146 7.34031 7.58047 8.51871 9.26051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.002166 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.626795 B =12926.106092 C =13244.218208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.433 5.433 4 C 0.015 3.985 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.266 4.266 8 C 0.587 3.413 9 O -0.588 6.588 10 N -0.701 5.701 11 C 0.127 3.873 12 H 0.076 0.924 13 C 0.047 3.953 14 O -0.378 6.378 15 C 0.077 3.923 16 C 0.150 3.850 17 N -0.629 5.629 18 C -0.231 4.231 19 H 0.092 0.908 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.262 1.262 26 C 0.132 3.868 27 C -0.108 4.108 28 C 0.098 3.902 29 C -0.089 4.089 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.415 0.585 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.009 0.991 43 H 0.046 0.954 44 H 0.248 0.752 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.112 0.888 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -29.276 15.599 33.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.034 4.034 3 N -0.109 5.109 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.205 4.205 7 C -0.276 4.276 8 C 0.378 3.622 9 O -0.471 6.471 10 N -0.353 5.353 11 C 0.020 3.980 12 H 0.094 0.906 13 C -0.031 4.031 14 O -0.295 6.295 15 C 0.036 3.964 16 C 0.024 3.976 17 N -0.357 5.357 18 C -0.359 4.359 19 H 0.110 0.890 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.811 3.189 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.187 1.187 26 C 0.007 3.993 27 C -0.146 4.146 28 C -0.020 4.020 29 C -0.147 4.147 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.177 0.823 39 H 0.252 0.748 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.131 0.869 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.190 -29.433 14.697 32.971 hybrid contribution -0.570 1.384 -0.555 1.596 sum -2.761 -28.049 14.142 31.534 Atomic orbital electron populations 1.22145 0.93631 1.04222 1.02401 1.22216 0.96110 0.78881 1.06220 1.43910 1.49777 1.12931 1.04313 1.20735 1.06478 0.92083 0.90041 1.20438 1.03266 1.02806 0.87338 1.22017 1.08284 0.98251 0.91966 1.20057 1.18423 0.94857 0.94248 1.17817 0.75236 0.82198 0.86946 1.90720 1.56989 1.82929 1.16424 1.45489 1.67539 1.11821 1.10435 1.22206 0.95296 0.86061 0.94391 0.90552 1.23571 0.93275 0.84273 1.01964 1.88279 1.33752 1.16273 1.91226 1.23766 0.87484 0.89129 0.96018 1.22441 0.97246 0.86126 0.91743 1.46028 1.43681 1.23820 1.22207 1.19424 1.14251 0.97448 1.04774 0.89016 1.25721 1.01610 1.02384 0.96522 1.70044 1.39489 1.39633 1.11234 0.85011 0.77248 0.78567 0.78094 1.21483 1.22223 1.18652 1.22683 0.92754 0.87659 0.96236 1.22877 0.99004 0.92174 1.00511 1.20426 1.00299 0.91115 0.90202 1.20504 1.03431 1.01994 0.88729 0.88360 0.92210 0.93278 0.87932 0.86769 0.89829 0.90375 0.89223 0.82330 0.74764 0.89166 0.91743 0.97354 0.93566 0.94282 0.90397 0.93585 0.90580 0.86928 0.90672 0.90592 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 71.98 0.74 -0.35 16 2 C 0.09 0.62 6.09 86.38 0.53 1.14 16 3 N -0.43 -6.62 2.69 -495.48 -1.33 -7.95 16 4 C 0.01 0.22 6.85 40.98 0.28 0.50 16 5 C -0.08 -0.58 9.81 71.24 0.70 0.11 16 6 C -0.18 -3.47 10.45 23.62 0.25 -3.23 16 7 C -0.27 -6.72 6.29 -19.04 -0.12 -6.84 16 8 C 0.59 18.05 7.81 86.62 0.68 18.72 16 9 O -0.59 -22.25 14.50 -4.12 -0.06 -22.31 16 10 N -0.70 -18.98 5.12 -439.57 -2.25 -21.23 16 11 C 0.13 4.15 3.32 46.34 0.15 4.30 16 12 H 0.08 2.99 7.62 -2.39 -0.02 2.97 16 13 C 0.05 1.53 7.58 72.48 0.55 2.08 16 14 O -0.38 -14.53 11.17 -148.98 -1.66 -16.20 16 15 C 0.08 3.13 1.48 -10.34 -0.02 3.12 16 16 C 0.15 7.85 6.98 86.12 0.60 8.45 16 17 N -0.63 -33.50 3.69 -739.65 -2.73 -36.22 16 18 C -0.23 -13.15 10.70 84.03 0.90 -12.25 16 19 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.96 -59.80 11.40 21.65 0.25 -59.55 16 22 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 26 C 0.13 5.56 8.49 86.11 0.73 6.29 16 27 C -0.11 -3.66 6.05 31.88 0.19 -3.46 16 28 C 0.10 2.12 6.89 41.78 0.29 2.41 16 29 C -0.09 -1.75 9.52 71.24 0.68 -1.07 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.53 6.88 -2.39 -0.02 0.52 16 34 H 0.11 0.33 7.52 -2.39 -0.02 0.31 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.35 7.60 -2.39 -0.02 0.33 16 37 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.16 2.34 7.70 -2.91 -0.02 2.32 16 39 H 0.41 8.63 7.65 -92.71 -0.71 7.92 16 40 H 0.09 2.51 8.02 -2.39 -0.02 2.49 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.05 2.66 7.16 -2.39 -0.02 2.64 16 44 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.08 2.98 8.05 -2.38 -0.02 2.96 16 48 H 0.11 3.01 7.98 -2.39 -0.02 2.99 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 1.92 6.47 -2.39 -0.02 1.91 16 51 H 0.09 1.14 6.92 -2.39 -0.02 1.12 16 Total: -1.00 -79.02 410.57 2.06 -76.96 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.22 Total: 21.60 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 7.59 Total: 16.35 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.06 Total: -124.95 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.72 Total: -38.50 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.02 2.06 -76.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053863702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.695 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds