Wall clock time and date at job start Wed Apr 1 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46509 * 109.46697 * 2 1 4 4 C 1.35538 * 125.67568 * 266.14581 * 3 2 1 5 5 C 1.35456 * 108.86953 * 180.30485 * 4 3 2 6 6 C 1.39835 * 107.86316 * 359.73521 * 5 4 3 7 7 C 1.37642 * 125.67903 * 85.99407 * 3 2 1 8 8 C 1.46678 * 126.23170 * 359.96354 * 7 3 2 9 9 O 1.21696 * 120.00351 * 334.22244 * 8 7 3 10 10 N 1.34777 * 120.00100 * 154.22935 * 8 7 3 11 11 C 1.47163 * 121.06030 * 352.61486 * 10 8 7 12 12 C 1.53283 * 108.54295 * 231.12770 * 11 10 8 13 13 H 1.08992 * 109.51354 * 67.05961 * 12 11 10 14 14 C 1.53002 * 109.50864 * 187.15993 * 12 11 10 15 15 O 1.43085 * 109.23160 * 307.12829 * 12 11 10 16 16 C 1.42069 * 114.31690 * 61.18608 * 15 12 11 17 17 C 1.54507 * 110.33553 * 61.85550 * 16 15 12 18 18 C 1.55028 * 101.51859 * 83.96295 * 17 16 15 19 19 N 1.47492 * 104.89527 * 36.37560 * 18 17 16 20 20 C 1.36938 * 125.66507 * 155.94005 * 19 18 17 21 21 H 1.08003 * 119.99950 * 180.02562 * 20 19 18 22 22 C 1.38807 * 119.99787 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00577 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47144 * 59.99575 * 24 22 20 26 26 H 1.48499 * 109.47419 * 179.97438 * 24 22 20 27 27 H 1.48511 * 109.46891 * 300.00187 * 24 22 20 28 28 C 1.47180 * 108.67106 * 335.97675 * 19 18 17 29 29 C 1.47316 * 121.06394 * 172.64167 * 10 8 7 30 30 H 1.08989 * 109.47384 * 305.50817 * 1 2 3 31 31 H 1.09000 * 109.46900 * 65.51318 * 1 2 3 32 32 H 1.08998 * 109.46698 * 185.50645 * 1 2 3 33 33 H 1.09000 * 109.47408 * 240.00277 * 2 1 3 34 34 H 1.08998 * 109.47276 * 119.99626 * 2 1 3 35 35 H 1.07996 * 125.56469 * 0.02562 * 4 3 2 36 36 H 1.07997 * 126.06564 * 179.69788 * 5 4 3 37 37 H 1.07996 * 126.46092 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.62413 * 350.84576 * 11 10 8 39 39 H 1.08996 * 109.62410 * 111.22201 * 11 10 8 40 40 H 1.08999 * 109.47503 * 64.89960 * 14 12 11 41 41 H 1.08998 * 109.46942 * 184.90159 * 14 12 11 42 42 H 1.09007 * 109.47231 * 304.89619 * 14 12 11 43 43 H 1.08998 * 111.01613 * 202.01742 * 17 16 15 44 44 H 1.09003 * 111.02006 * 325.90587 * 17 16 15 45 45 H 1.08998 * 110.35523 * 155.22793 * 18 17 16 46 46 H 1.09004 * 110.35483 * 277.41859 * 18 17 16 47 47 H 0.96993 * 120.00357 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.90891 * 242.14355 * 28 19 18 49 49 H 1.09004 * 109.91159 * 120.88088 * 28 19 18 50 50 H 1.09006 * 109.68010 * 10.83147 * 29 10 8 51 51 H 1.08996 * 109.68011 * 250.28125 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3515 2.1019 -1.0985 5 6 2.7652 3.3310 -0.7073 6 6 2.6836 3.3872 0.6875 7 6 2.2122 2.1643 1.1153 8 6 1.9679 1.7676 2.5062 9 8 1.1540 0.8983 2.7570 10 7 2.6446 2.3659 3.5064 11 6 3.7452 3.3016 3.2252 12 6 4.9688 2.8751 4.0439 13 1 5.3367 1.9171 3.6767 14 6 6.0679 3.9307 3.9077 15 8 4.5948 2.7481 5.4192 16 6 3.5931 1.7712 5.6652 17 6 4.0977 0.3696 5.2552 18 6 4.8854 -0.0581 6.5201 19 7 4.1126 0.4890 7.6509 20 6 4.1286 0.0114 8.9342 21 1 3.5235 0.4839 9.6939 22 6 4.9225 -1.0800 9.2587 23 7 5.6596 -1.6562 8.3329 24 14 4.9438 -1.7320 11.0091 25 1 3.5745 -2.1568 11.3958 26 1 5.8644 -2.8942 11.0933 27 1 5.4091 -0.6635 11.9297 28 6 3.3206 1.6329 7.1709 29 6 2.3068 2.1036 4.9161 30 1 -0.3633 0.5968 0.8365 31 1 -0.3633 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0986 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3002 1.7517 -2.1188 36 1 3.0994 4.1261 -1.3573 37 1 2.9409 4.2299 1.3120 38 1 3.9874 3.2731 2.1628 39 1 3.4474 4.3118 3.5058 40 1 5.7313 4.8657 4.3557 41 1 6.9675 3.5865 4.4179 42 1 6.2880 4.0920 2.8524 43 1 3.2638 -0.3065 5.0668 44 1 4.7545 0.4290 4.3872 45 1 4.9358 -1.1449 6.5859 46 1 5.8889 0.3672 6.5036 47 1 6.2146 -2.4186 8.5597 48 1 3.6288 2.5411 7.6888 49 1 2.2600 1.4475 7.3407 50 1 1.6177 1.2612 4.9779 51 1 1.8453 2.9888 5.3537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071240381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:36 Heat of formation + Delta-G solvation = 22.429518 kcal Electronic energy + Delta-G solvation = -32582.501838 eV Core-core repulsion = 28484.627675 eV Total energy + Delta-G solvation = -4097.874163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73026 -40.26088 -38.37801 -36.39516 -34.97497 -34.03703 -33.10835 -31.33064 -30.15411 -29.53487 -29.05528 -28.21460 -26.55118 -25.61983 -23.88565 -23.71789 -22.15140 -21.62491 -20.82801 -20.10375 -19.25683 -18.94876 -17.51738 -17.02852 -16.57999 -16.39139 -15.59686 -15.52525 -14.98248 -14.79485 -14.58910 -14.38278 -14.25510 -13.87103 -13.83963 -13.39556 -13.34537 -12.88793 -12.76005 -12.70866 -12.44766 -12.35969 -12.30735 -12.17769 -12.13632 -11.74792 -11.58692 -11.49207 -11.40491 -11.00681 -10.89232 -10.83512 -10.45703 -10.24878 -10.09479 -9.99212 -9.81953 -9.58112 -9.46397 -8.91118 -8.61344 -8.49687 -8.22708 -6.80469 -5.61201 -3.03068 1.38856 2.37319 2.56172 3.06250 3.21904 3.43712 3.47300 3.48916 3.87885 4.37800 4.46486 4.51948 4.71502 4.78375 4.82705 4.95907 5.03428 5.08992 5.14936 5.16005 5.19404 5.26898 5.38914 5.47724 5.50931 5.52653 5.55531 5.57598 5.64040 5.77980 5.84800 5.87149 5.91662 5.97934 5.98841 6.01514 6.17671 6.25488 6.34851 6.53197 6.56452 6.62716 6.64442 6.71335 6.81157 7.02555 7.32764 7.56886 7.64251 7.68971 7.88855 8.09966 8.38453 9.24980 9.85493 10.50654 11.42707 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003002 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.710603 B = 9323.838897 C =10265.111433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.407 5.407 4 C 0.011 3.989 5 C -0.208 4.208 6 C -0.154 4.154 7 C -0.041 4.041 8 C 0.588 3.412 9 O -0.542 6.542 10 N -0.597 5.597 11 C 0.062 3.938 12 C 0.069 3.931 13 H 0.066 0.934 14 C -0.141 4.141 15 O -0.353 6.353 16 C 0.097 3.903 17 C -0.164 4.164 18 C 0.161 3.839 19 N -0.601 5.601 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.154 3.846 29 C 0.101 3.899 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.014 0.986 47 H 0.252 0.748 48 H 0.037 0.963 49 H 0.039 0.961 50 H 0.104 0.896 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 10.136 -21.314 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.080 5.080 4 C -0.124 4.124 5 C -0.232 4.232 6 C -0.179 4.179 7 C -0.155 4.155 8 C 0.377 3.623 9 O -0.420 6.420 10 N -0.330 5.330 11 C -0.061 4.061 12 C 0.010 3.990 13 H 0.083 0.917 14 C -0.198 4.198 15 O -0.272 6.272 16 C 0.056 3.944 17 C -0.203 4.203 18 C 0.036 3.964 19 N -0.328 5.328 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.746 3.254 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.028 3.972 29 C -0.021 4.021 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.122 0.878 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.576 9.212 -20.862 23.477 hybrid contribution 0.020 -0.332 0.560 0.651 sum -5.556 8.880 -20.303 22.846 Atomic orbital electron populations 1.22088 0.93689 1.03427 1.02907 1.21968 0.96350 0.79394 1.04432 1.44112 1.47100 1.11710 1.05110 1.21987 1.05817 0.93072 0.91544 1.20821 1.09737 0.97580 0.95017 1.21558 1.04417 0.96483 0.95489 1.20082 1.14150 0.93650 0.87632 1.17011 0.80903 0.81055 0.83346 1.90809 1.35756 1.31063 1.84407 1.47787 1.33987 1.45150 1.06062 1.23112 0.87216 0.93121 1.02671 1.22472 0.93578 0.99375 0.83550 0.91664 1.21693 0.97890 0.98388 1.01876 1.87902 1.57358 1.58184 1.23752 1.22258 0.86380 0.88890 0.96848 1.23494 1.01008 0.95356 1.00447 1.21879 0.91143 1.01774 0.81612 1.44489 1.49938 1.31671 1.06658 1.19029 1.21723 1.09732 0.84454 0.90412 1.24783 0.99160 0.98638 0.98076 1.69796 1.31500 1.24705 1.31116 0.86133 0.77307 0.78198 0.83736 1.21161 1.21619 1.21204 1.21048 0.95356 0.92473 0.88363 1.22237 0.98158 1.02918 0.78819 0.90666 0.92593 0.90754 0.89272 0.88542 0.81648 0.84066 0.83288 0.87087 0.90499 0.91623 0.91287 0.91131 0.91388 0.92269 0.87727 0.96809 0.93733 0.94510 0.94318 0.87796 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.10 37.16 0.38 -1.16 16 2 C 0.10 0.96 6.08 -4.04 -0.02 0.94 16 3 N -0.41 -4.46 2.76 -112.87 -0.31 -4.77 16 4 C 0.01 0.10 11.37 -16.91 -0.19 -0.10 16 5 C -0.21 -1.86 10.81 -39.98 -0.43 -2.30 16 6 C -0.15 -1.61 8.48 -39.12 -0.33 -1.94 16 7 C -0.04 -0.52 6.41 -81.98 -0.53 -1.05 16 8 C 0.59 8.87 7.47 -12.85 -0.10 8.78 16 9 O -0.54 -9.53 13.96 5.19 0.07 -9.46 16 10 N -0.60 -8.60 2.91 -174.16 -0.51 -9.10 16 11 C 0.06 0.72 4.50 -3.53 -0.02 0.71 16 12 C 0.07 0.95 3.17 -26.58 -0.08 0.87 16 13 H 0.07 0.98 6.13 -51.93 -0.32 0.66 16 14 C -0.14 -1.52 9.57 37.16 0.36 -1.17 16 15 O -0.35 -6.34 9.87 -35.23 -0.35 -6.69 16 16 C 0.10 1.81 0.83 -89.74 -0.07 1.73 16 17 C -0.16 -3.37 5.91 -24.87 -0.15 -3.52 16 18 C 0.16 4.09 5.89 -2.43 -0.01 4.07 16 19 N -0.60 -15.91 3.40 -170.24 -0.58 -16.49 16 20 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -27.42 10.09 55.49 0.56 -26.86 16 24 Si 0.92 22.42 29.55 -169.99 -5.02 17.40 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 C 0.15 3.35 6.61 -3.34 -0.02 3.32 16 29 C 0.10 1.63 5.19 -3.84 -0.02 1.61 16 30 H 0.07 0.93 7.14 -51.94 -0.37 0.55 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.10 1.13 7.30 -51.93 -0.38 0.75 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.31 6.14 -52.49 -0.32 0.99 16 38 H 0.11 1.13 4.32 -51.93 -0.22 0.91 16 39 H 0.08 0.81 8.13 -51.93 -0.42 0.38 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 44 H 0.06 1.14 5.97 -51.93 -0.31 0.83 16 45 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 49 H 0.04 0.80 7.79 -51.93 -0.40 0.40 16 50 H 0.10 1.81 6.87 -51.93 -0.36 1.46 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -33.62 391.00 -9.76 -43.38 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.01 Total: 2.77 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.50 Total: 3.94 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.84 Total: -57.23 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.28 Total: -16.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.62 -9.76 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071240381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.805 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds