Wall clock time and date at job start Wed Apr 1 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46509 * 109.46697 * 2 1 4 4 C 1.35538 * 125.67568 * 266.14581 * 3 2 1 5 5 C 1.35456 * 108.86953 * 180.30485 * 4 3 2 6 6 C 1.39835 * 107.86316 * 359.73521 * 5 4 3 7 7 C 1.37642 * 125.67903 * 85.99407 * 3 2 1 8 8 C 1.46678 * 126.23170 * 359.96354 * 7 3 2 9 9 O 1.21696 * 120.00351 * 334.22244 * 8 7 3 10 10 N 1.34777 * 120.00100 * 154.22935 * 8 7 3 11 11 C 1.47163 * 121.06030 * 352.61486 * 10 8 7 12 12 C 1.53283 * 108.54295 * 231.12770 * 11 10 8 13 13 H 1.08992 * 109.51354 * 67.05961 * 12 11 10 14 14 C 1.53002 * 109.50864 * 187.15993 * 12 11 10 15 15 O 1.43085 * 109.23160 * 307.12829 * 12 11 10 16 16 C 1.42069 * 114.31690 * 61.18608 * 15 12 11 17 17 C 1.54507 * 110.33553 * 61.85550 * 16 15 12 18 18 C 1.55028 * 101.51859 * 83.96295 * 17 16 15 19 19 N 1.47492 * 104.89527 * 36.37560 * 18 17 16 20 20 C 1.36938 * 125.66507 * 155.94005 * 19 18 17 21 21 H 1.08003 * 119.99950 * 180.02562 * 20 19 18 22 22 C 1.38807 * 119.99787 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00577 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47144 * 59.99575 * 24 22 20 26 26 H 1.48499 * 109.47419 * 179.97438 * 24 22 20 27 27 H 1.48511 * 109.46891 * 300.00187 * 24 22 20 28 28 C 1.47180 * 108.67106 * 335.97675 * 19 18 17 29 29 C 1.47316 * 121.06394 * 172.64167 * 10 8 7 30 30 H 1.08989 * 109.47384 * 305.50817 * 1 2 3 31 31 H 1.09000 * 109.46900 * 65.51318 * 1 2 3 32 32 H 1.08998 * 109.46698 * 185.50645 * 1 2 3 33 33 H 1.09000 * 109.47408 * 240.00277 * 2 1 3 34 34 H 1.08998 * 109.47276 * 119.99626 * 2 1 3 35 35 H 1.07996 * 125.56469 * 0.02562 * 4 3 2 36 36 H 1.07997 * 126.06564 * 179.69788 * 5 4 3 37 37 H 1.07996 * 126.46092 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.62413 * 350.84576 * 11 10 8 39 39 H 1.08996 * 109.62410 * 111.22201 * 11 10 8 40 40 H 1.08999 * 109.47503 * 64.89960 * 14 12 11 41 41 H 1.08998 * 109.46942 * 184.90159 * 14 12 11 42 42 H 1.09007 * 109.47231 * 304.89619 * 14 12 11 43 43 H 1.08998 * 111.01613 * 202.01742 * 17 16 15 44 44 H 1.09003 * 111.02006 * 325.90587 * 17 16 15 45 45 H 1.08998 * 110.35523 * 155.22793 * 18 17 16 46 46 H 1.09004 * 110.35483 * 277.41859 * 18 17 16 47 47 H 0.96993 * 120.00357 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.90891 * 242.14355 * 28 19 18 49 49 H 1.09004 * 109.91159 * 120.88088 * 28 19 18 50 50 H 1.09006 * 109.68010 * 10.83147 * 29 10 8 51 51 H 1.08996 * 109.68011 * 250.28125 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3515 2.1019 -1.0985 5 6 2.7652 3.3310 -0.7073 6 6 2.6836 3.3872 0.6875 7 6 2.2122 2.1643 1.1153 8 6 1.9679 1.7676 2.5062 9 8 1.1540 0.8983 2.7570 10 7 2.6446 2.3659 3.5064 11 6 3.7452 3.3016 3.2252 12 6 4.9688 2.8751 4.0439 13 1 5.3367 1.9171 3.6767 14 6 6.0679 3.9307 3.9077 15 8 4.5948 2.7481 5.4192 16 6 3.5931 1.7712 5.6652 17 6 4.0977 0.3696 5.2552 18 6 4.8854 -0.0581 6.5201 19 7 4.1126 0.4890 7.6509 20 6 4.1286 0.0114 8.9342 21 1 3.5235 0.4839 9.6939 22 6 4.9225 -1.0800 9.2587 23 7 5.6596 -1.6562 8.3329 24 14 4.9438 -1.7320 11.0091 25 1 3.5745 -2.1568 11.3958 26 1 5.8644 -2.8942 11.0933 27 1 5.4091 -0.6635 11.9297 28 6 3.3206 1.6329 7.1709 29 6 2.3068 2.1036 4.9161 30 1 -0.3633 0.5968 0.8365 31 1 -0.3633 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0986 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3002 1.7517 -2.1188 36 1 3.0994 4.1261 -1.3573 37 1 2.9409 4.2299 1.3120 38 1 3.9874 3.2731 2.1628 39 1 3.4474 4.3118 3.5058 40 1 5.7313 4.8657 4.3557 41 1 6.9675 3.5865 4.4179 42 1 6.2880 4.0920 2.8524 43 1 3.2638 -0.3065 5.0668 44 1 4.7545 0.4290 4.3872 45 1 4.9358 -1.1449 6.5859 46 1 5.8889 0.3672 6.5036 47 1 6.2146 -2.4186 8.5597 48 1 3.6288 2.5411 7.6888 49 1 2.2600 1.4475 7.3407 50 1 1.6177 1.2612 4.9779 51 1 1.8453 2.9888 5.3537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071240381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:35 Heat of formation + Delta-G solvation = 1.715882 kcal Electronic energy + Delta-G solvation = -32583.400049 eV Core-core repulsion = 28484.627675 eV Total energy + Delta-G solvation = -4098.772374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.58488 -41.50560 -39.63067 -38.01176 -36.11657 -34.93941 -34.76471 -32.98229 -31.32199 -30.77251 -30.27157 -29.60392 -27.65278 -27.21123 -25.58838 -24.51433 -23.32527 -22.82546 -21.97389 -21.60205 -20.59896 -19.92016 -19.02161 -18.44313 -17.96598 -17.50730 -16.89515 -16.61322 -16.48457 -16.15356 -15.78979 -15.63256 -15.44174 -15.15542 -14.95023 -14.70121 -14.54833 -14.25231 -14.10074 -13.88238 -13.59446 -13.46979 -13.41023 -13.11085 -13.09335 -12.97722 -12.87669 -12.80927 -12.73584 -12.62865 -12.29433 -12.24672 -12.14162 -12.04601 -11.89493 -11.59386 -11.49849 -11.03190 -10.91350 -10.76173 -9.64880 -9.63403 -9.10156 -8.94956 -7.79606 -5.25260 0.50537 1.44881 1.46926 1.49682 1.55832 1.84814 2.15651 2.24802 2.45419 2.60608 3.29880 3.37345 3.51392 3.56281 3.76897 3.77864 3.85613 3.94197 4.04833 4.09225 4.19395 4.21528 4.32698 4.34865 4.42523 4.45493 4.47192 4.51136 4.56415 4.69155 4.71004 4.75258 4.77517 4.83881 4.84388 4.92850 5.04213 5.09583 5.16824 5.17961 5.24162 5.31646 5.34137 5.41990 5.51771 5.70880 5.86821 6.03546 6.22898 6.25142 6.31895 6.37308 7.00623 7.05835 7.72157 8.37311 9.22909 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003002 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.710603 B = 9323.838897 C =10265.111433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.416 5.416 4 C 0.023 3.977 5 C -0.213 4.213 6 C -0.143 4.143 7 C -0.084 4.084 8 C 0.582 3.418 9 O -0.580 6.580 10 N -0.600 5.600 11 C 0.068 3.932 12 C 0.060 3.940 13 H 0.048 0.952 14 C -0.134 4.134 15 O -0.373 6.373 16 C 0.114 3.886 17 C -0.147 4.147 18 C 0.169 3.831 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.086 0.914 22 C -0.069 4.069 23 N -0.952 5.952 24 Si 0.986 3.014 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.148 3.852 29 C 0.111 3.889 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.202 0.798 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.071 0.929 46 H -0.016 1.016 47 H 0.247 0.753 48 H 0.036 0.964 49 H 0.051 0.949 50 H 0.086 0.914 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 12.313 -23.837 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.090 5.090 4 C -0.112 4.112 5 C -0.237 4.237 6 C -0.170 4.170 7 C -0.196 4.196 8 C 0.374 3.626 9 O -0.461 6.461 10 N -0.332 5.332 11 C -0.053 4.053 12 C 0.002 3.998 13 H 0.066 0.934 14 C -0.192 4.192 15 O -0.292 6.292 16 C 0.073 3.927 17 C -0.185 4.185 18 C 0.044 3.956 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.813 3.187 25 H -0.201 1.201 26 H -0.219 1.219 27 H -0.203 1.203 28 C 0.022 3.978 29 C -0.013 4.013 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.218 0.782 36 H 0.186 0.814 37 H 0.183 0.817 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.002 0.998 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.104 0.896 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.847 11.436 -23.397 26.690 hybrid contribution 0.135 -0.970 1.240 1.581 sum -5.712 10.465 -22.157 25.161 Atomic orbital electron populations 1.22011 0.93693 1.03417 1.02242 1.22016 0.96344 0.79329 1.04606 1.44291 1.47335 1.12021 1.05315 1.22698 1.03430 0.92759 0.92341 1.21206 1.09485 0.98400 0.94563 1.21857 1.02710 0.95774 0.96633 1.19913 1.17642 0.95296 0.86791 1.17467 0.80266 0.80329 0.84554 1.90782 1.37416 1.32818 1.85095 1.47833 1.34658 1.45611 1.05072 1.23263 0.85273 0.93337 1.03426 1.22798 0.95533 0.99806 0.81626 0.93440 1.21719 0.95900 0.97431 1.04126 1.87873 1.57213 1.57372 1.26763 1.21916 0.87920 0.87878 0.95021 1.23249 1.00106 0.96726 0.98451 1.21553 0.90615 0.99478 0.83936 1.44779 1.50498 1.33165 1.06475 1.19471 1.21809 1.10045 0.85656 0.89655 1.25706 0.99050 0.99025 1.02298 1.70063 1.32138 1.24910 1.33005 0.85043 0.77477 0.77329 0.78809 1.20079 1.21913 1.20258 1.21218 0.95228 0.90770 0.90535 1.21949 0.96105 1.03086 0.80122 0.94155 0.90771 0.89935 0.85856 0.91523 0.78155 0.81354 0.81700 0.84959 0.88211 0.90663 0.92830 0.87606 0.92304 0.91059 0.91106 0.99812 0.94316 0.94599 0.93170 0.89597 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.10 71.98 0.73 -2.11 16 2 C 0.10 1.80 6.08 86.38 0.53 2.32 16 3 N -0.42 -8.31 2.76 -511.00 -1.41 -9.72 16 4 C 0.02 0.31 11.37 83.48 0.95 1.26 16 5 C -0.21 -2.92 10.81 22.01 0.24 -2.68 16 6 C -0.14 -2.53 8.48 22.57 0.19 -2.34 16 7 C -0.08 -2.00 6.41 40.35 0.26 -1.74 16 8 C 0.58 17.60 7.47 86.45 0.65 18.25 16 9 O -0.58 -21.28 13.96 -4.33 -0.06 -21.34 16 10 N -0.60 -16.84 2.91 -823.12 -2.40 -19.23 16 11 C 0.07 1.45 4.50 86.35 0.39 1.84 16 12 C 0.06 1.59 3.17 30.69 0.10 1.69 16 13 H 0.05 1.42 6.13 -2.39 -0.01 1.40 16 14 C -0.13 -2.60 9.57 71.98 0.69 -1.91 16 15 O -0.37 -13.31 9.87 -148.98 -1.47 -14.78 16 16 C 0.11 4.31 0.83 -10.23 -0.01 4.30 16 17 C -0.15 -6.29 5.91 31.80 0.19 -6.11 16 18 C 0.17 9.13 5.89 86.88 0.51 9.64 16 19 N -0.62 -34.28 3.40 -692.52 -2.36 -36.63 16 20 C -0.24 -14.11 10.28 84.03 0.86 -13.25 16 21 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 23 N -0.95 -59.02 10.09 21.65 0.22 -58.80 16 24 Si 0.99 47.01 29.55 68.60 2.03 49.04 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 C 0.15 6.58 6.61 86.46 0.57 7.15 16 29 C 0.11 3.56 5.19 86.06 0.45 4.01 16 30 H 0.04 1.02 7.14 -2.39 -0.02 1.00 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 34 H 0.07 1.62 7.30 -2.39 -0.02 1.60 16 35 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.17 2.24 6.14 -2.91 -0.02 2.22 16 38 H 0.13 2.27 4.32 -2.39 -0.01 2.26 16 39 H 0.10 1.72 8.13 -2.39 -0.02 1.70 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 2.62 7.86 -2.39 -0.02 2.60 16 44 H 0.07 2.85 5.97 -2.39 -0.01 2.84 16 45 H 0.07 4.30 5.88 -2.39 -0.01 4.29 16 46 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.04 1.60 8.06 -2.39 -0.02 1.59 16 49 H 0.05 2.11 7.79 -2.38 -0.02 2.09 16 50 H 0.09 3.10 6.87 -2.38 -0.02 3.08 16 51 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -78.06 391.00 3.23 -74.83 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.93 Total: 19.89 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 7.75 Total: 16.75 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.94 Total: -124.38 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.53 Total: -36.13 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -78.06 3.23 -74.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071240381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.548 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds