Wall clock time and date at job start Wed Apr 1 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47185 * 2 1 4 4 C 1.35529 * 125.67628 * 261.45461 * 3 2 1 5 5 C 1.35455 * 108.87008 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86315 * 359.73879 * 5 4 3 7 7 C 1.37646 * 125.67476 * 81.47264 * 3 2 1 8 8 C 1.46677 * 126.23927 * 359.97438 * 7 3 2 9 9 O 1.21698 * 119.99873 * 25.66324 * 8 7 3 10 10 N 1.34773 * 119.99942 * 205.66734 * 8 7 3 11 11 C 1.47166 * 121.07084 * 359.84934 * 10 8 7 12 12 C 1.53283 * 108.54736 * 128.84657 * 11 10 8 13 13 H 1.08994 * 109.51160 * 292.92231 * 12 11 10 14 14 C 1.52999 * 109.50383 * 172.82152 * 12 11 10 15 15 O 1.43098 * 109.22524 * 52.90058 * 12 11 10 16 16 C 1.42064 * 114.33375 * 298.84674 * 15 12 11 17 17 C 1.54487 * 110.38779 * 182.83786 * 16 15 12 18 18 C 1.55285 * 101.42370 * 83.74021 * 17 16 15 19 19 N 1.47492 * 104.77363 * 36.69666 * 18 17 16 20 20 C 1.36933 * 125.66330 * 155.88455 * 19 18 17 21 21 H 1.07997 * 120.00071 * 179.69336 * 20 19 18 22 22 C 1.38815 * 119.99898 * 359.69143 * 20 19 18 23 23 N 1.31619 * 120.00175 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99770 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47065 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.47206 * 299.99516 * 24 22 20 27 27 H 1.48505 * 109.47294 * 59.99859 * 24 22 20 28 28 C 1.47183 * 108.66953 * 335.61894 * 19 18 17 29 29 C 1.47312 * 121.06452 * 179.83084 * 10 8 7 30 30 H 1.09000 * 109.47053 * 55.02693 * 1 2 3 31 31 H 1.09001 * 109.47157 * 175.02036 * 1 2 3 32 32 H 1.09003 * 109.47055 * 295.02508 * 1 2 3 33 33 H 1.08997 * 109.46831 * 240.00254 * 2 1 3 34 34 H 1.08997 * 109.47322 * 119.99834 * 2 1 3 35 35 H 1.08003 * 125.56547 * 0.05111 * 4 3 2 36 36 H 1.08001 * 126.06577 * 180.02562 * 5 4 3 37 37 H 1.08009 * 126.45778 * 180.30486 * 6 5 4 38 38 H 1.08996 * 109.62577 * 248.56775 * 11 10 8 39 39 H 1.09000 * 109.62112 * 9.13441 * 11 10 8 40 40 H 1.08998 * 109.47570 * 60.00685 * 14 12 11 41 41 H 1.09009 * 109.46517 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47456 * 299.99737 * 14 12 11 43 43 H 1.08995 * 111.01613 * 201.99563 * 17 16 15 44 44 H 1.08996 * 111.01069 * 325.84029 * 17 16 15 45 45 H 1.08999 * 110.50911 * 277.83608 * 18 17 16 46 46 H 1.09004 * 110.32313 * 155.46206 * 18 17 16 47 47 H 0.96998 * 120.00069 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.90400 * 121.14741 * 28 19 18 49 49 H 1.08997 * 109.90656 * 242.22003 * 28 19 18 50 50 H 1.08994 * 109.68212 * 109.69004 * 29 10 8 51 51 H 1.09001 * 109.68020 * 349.14184 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4361 2.0719 -1.0887 5 6 2.8140 3.3137 -0.7013 6 6 2.6214 3.4091 0.6804 7 6 2.1296 2.1933 1.1058 8 6 1.7824 1.8331 2.4846 9 8 1.8039 0.6672 2.8327 10 7 1.4396 2.7933 3.3660 11 6 1.4090 4.2107 2.9712 12 6 0.0547 4.8014 3.3796 13 1 -0.7359 4.3449 2.7842 14 6 0.0646 6.3130 3.1432 15 8 -0.1761 4.5361 4.7666 16 6 -0.2292 3.1555 5.0976 17 6 -0.5517 2.9737 6.5974 18 6 -2.1007 3.0823 6.5944 19 7 -2.5218 2.4197 5.3457 20 6 -3.7490 1.8581 5.1145 21 1 -3.9618 1.3991 4.1604 22 6 -4.7197 1.8787 6.1066 23 7 -4.4607 2.4385 7.2693 24 14 -6.3937 1.1120 5.7915 25 1 -7.2432 1.2640 6.9999 26 1 -7.0415 1.7928 4.6416 27 1 -6.2270 -0.3310 5.4825 28 6 -1.4058 2.4681 4.3873 29 6 1.0831 2.4577 4.7553 30 1 -0.3633 0.5890 -0.8421 31 1 -0.3633 -1.0238 -0.0892 32 1 -0.3633 0.4347 0.9312 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.4629 1.6941 -2.1001 36 1 3.1921 4.0933 -1.3460 37 1 2.8219 4.2720 1.2982 38 1 2.2106 4.7490 3.4769 39 1 1.5335 4.2928 1.8915 40 1 0.2449 6.5145 2.0872 41 1 -0.8989 6.7324 3.4333 42 1 0.8544 6.7691 3.7402 43 1 -0.2253 1.9959 6.9517 44 1 -0.1067 3.7712 7.1924 45 1 -2.4103 4.1274 6.5919 46 1 -2.5183 2.5644 7.4578 47 1 -5.1388 2.4526 7.9627 48 1 -1.1234 1.4567 4.0952 49 1 -1.6973 3.0407 3.5068 50 1 1.8680 2.8012 5.4290 51 1 0.9613 1.3789 4.8527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071240384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:49 Heat of formation + Delta-G solvation = 28.637018 kcal Electronic energy + Delta-G solvation = -32937.127386 eV Core-core repulsion = 28839.522400 eV Total energy + Delta-G solvation = -4097.604986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72299 -40.22524 -38.35717 -36.38782 -34.95896 -34.02026 -33.16568 -31.32108 -30.15421 -29.50517 -29.18834 -27.92125 -26.57075 -25.69871 -23.90901 -23.69879 -22.10845 -21.56976 -20.84693 -20.25622 -19.25608 -18.87621 -17.38518 -16.99449 -16.52516 -16.44479 -15.64893 -15.33976 -15.10460 -14.81035 -14.69387 -14.37130 -14.08273 -13.90967 -13.63943 -13.60760 -13.34650 -12.94766 -12.78223 -12.73160 -12.40644 -12.36583 -12.24204 -12.11236 -12.06700 -11.61407 -11.49400 -11.38911 -11.37195 -11.03501 -10.89351 -10.83590 -10.43732 -10.30289 -10.11749 -9.99063 -9.72675 -9.55030 -9.53088 -8.86924 -8.62352 -8.48247 -8.20846 -6.80473 -5.62339 -3.03917 1.42167 2.38508 2.59870 3.09853 3.26625 3.41877 3.45703 3.47270 3.90429 4.40212 4.50197 4.51254 4.74194 4.80299 4.86230 4.98367 5.09932 5.10074 5.15508 5.17662 5.21641 5.31873 5.43714 5.48806 5.50711 5.53795 5.61746 5.62350 5.66250 5.72213 5.86754 5.88985 5.93157 5.97275 6.02050 6.08251 6.19039 6.28861 6.32208 6.49302 6.54978 6.61977 6.64928 6.73464 6.84337 7.06091 7.35024 7.58707 7.64293 7.68579 7.87966 8.12574 8.38298 9.24540 9.84730 10.50289 11.41368 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003636 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.829562 B = 7699.460455 C = 8844.262233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.406 5.406 4 C 0.011 3.989 5 C -0.207 4.207 6 C -0.161 4.161 7 C -0.039 4.039 8 C 0.589 3.411 9 O -0.545 6.545 10 N -0.597 5.597 11 C 0.047 3.953 12 C 0.069 3.931 13 H 0.067 0.933 14 C -0.140 4.140 15 O -0.354 6.354 16 C 0.096 3.904 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.600 5.600 20 C -0.222 4.222 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.123 3.877 29 C 0.101 3.899 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.018 0.982 46 H 0.108 0.892 47 H 0.253 0.747 48 H 0.028 0.972 49 H 0.023 0.977 50 H 0.074 0.926 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.395 3.225 -14.675 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.029 4.029 3 N -0.079 5.079 4 C -0.124 4.124 5 C -0.231 4.231 6 C -0.187 4.187 7 C -0.153 4.153 8 C 0.378 3.622 9 O -0.424 6.424 10 N -0.329 5.329 11 C -0.075 4.075 12 C 0.010 3.990 13 H 0.085 0.915 14 C -0.198 4.198 15 O -0.273 6.273 16 C 0.055 3.945 17 C -0.169 4.169 18 C 0.033 3.967 19 N -0.326 5.326 20 C -0.350 4.350 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.215 1.215 26 H -0.213 1.213 27 H -0.212 1.212 28 C -0.003 4.003 29 C -0.021 4.021 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.184 0.816 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.126 0.874 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.041 0.959 50 H 0.093 0.907 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.026 2.312 -14.204 21.539 hybrid contribution -0.837 -0.433 -0.534 1.084 sum 15.188 1.878 -14.738 21.247 Atomic orbital electron populations 1.22108 0.93759 1.03265 1.03279 1.22106 0.96108 0.79562 1.05121 1.44094 1.46318 1.11601 1.05867 1.22000 1.05036 0.93563 0.91845 1.20824 1.09683 0.97253 0.95354 1.21666 1.05253 0.95998 0.95744 1.20031 1.14309 0.92645 0.88285 1.17005 0.76858 0.84879 0.83438 1.90788 1.54151 1.18196 1.79314 1.47818 1.66883 1.06855 1.11313 1.23436 0.99090 0.80884 1.04073 1.22472 0.95163 0.96591 0.84771 0.91511 1.21688 1.03537 0.92998 1.01557 1.87864 1.92463 1.23417 1.23582 1.22282 0.92716 0.81503 0.97996 1.23043 1.01691 1.01085 0.91077 1.22008 0.86301 0.96344 0.92068 1.44490 1.10277 1.66823 1.11017 1.19001 0.87902 1.29385 0.98758 0.90797 1.24759 0.98453 1.01068 0.96207 1.69773 1.33285 1.49276 1.04654 0.86162 0.83573 0.78932 0.76883 1.21491 1.21278 1.21186 1.21699 0.88563 0.96875 0.93208 1.22293 0.96787 1.02575 0.80471 0.92111 0.90438 0.91532 0.89171 0.87492 0.81625 0.84035 0.82655 0.90479 0.85957 0.91119 0.91232 0.91772 0.90558 0.91002 0.96437 0.87428 0.93661 0.95459 0.95936 0.90734 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.23 37.16 0.38 -1.43 16 2 C 0.09 0.96 6.37 -4.04 -0.03 0.93 16 3 N -0.41 -4.73 2.76 -112.87 -0.31 -5.04 16 4 C 0.01 0.10 11.36 -16.91 -0.19 -0.09 16 5 C -0.21 -1.95 10.81 -39.98 -0.43 -2.38 16 6 C -0.16 -1.75 8.58 -39.12 -0.34 -2.09 16 7 C -0.04 -0.51 6.54 -81.98 -0.54 -1.05 16 8 C 0.59 9.31 7.57 -12.86 -0.10 9.21 16 9 O -0.55 -10.02 14.63 5.19 0.08 -9.95 16 10 N -0.60 -8.91 2.94 -174.16 -0.51 -9.42 16 11 C 0.05 0.58 4.80 -3.53 -0.02 0.56 16 12 C 0.07 0.99 3.17 -26.59 -0.08 0.90 16 13 H 0.07 1.09 6.23 -51.93 -0.32 0.77 16 14 C -0.14 -1.57 9.57 37.16 0.36 -1.21 16 15 O -0.35 -6.39 9.90 -35.23 -0.35 -6.74 16 16 C 0.10 1.79 0.80 -89.73 -0.07 1.72 16 17 C -0.13 -2.55 6.23 -24.74 -0.15 -2.71 16 18 C 0.16 3.95 5.91 -2.29 -0.01 3.94 16 19 N -0.60 -15.99 3.40 -170.06 -0.58 -16.57 16 20 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 21 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.12 2.76 6.32 -3.32 -0.02 2.74 16 29 C 0.10 1.65 5.20 -3.84 -0.02 1.63 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.11 1.32 6.59 -51.93 -0.34 0.98 16 35 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.16 1.39 5.70 -52.48 -0.30 1.09 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.29 3.51 -51.93 -0.18 1.11 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.11 2.98 5.86 -51.93 -0.30 2.68 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.03 0.64 7.61 -51.93 -0.40 0.25 16 49 H 0.02 0.53 6.02 -51.93 -0.31 0.21 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.10 1.83 6.83 -51.93 -0.35 1.48 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -33.97 391.96 -9.72 -43.69 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.97 Total: 3.57 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.52 Total: 3.76 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.84 Total: -57.67 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.27 Total: -16.69 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.97 -9.72 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071240384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.330 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds