Wall clock time and date at job start Wed Apr 1 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47185 * 2 1 4 4 C 1.35529 * 125.67628 * 261.45461 * 3 2 1 5 5 C 1.35455 * 108.87008 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86315 * 359.73879 * 5 4 3 7 7 C 1.37646 * 125.67476 * 81.47264 * 3 2 1 8 8 C 1.46677 * 126.23927 * 359.97438 * 7 3 2 9 9 O 1.21698 * 119.99873 * 25.66324 * 8 7 3 10 10 N 1.34773 * 119.99942 * 205.66734 * 8 7 3 11 11 C 1.47166 * 121.07084 * 359.84934 * 10 8 7 12 12 C 1.53283 * 108.54736 * 128.84657 * 11 10 8 13 13 H 1.08994 * 109.51160 * 292.92231 * 12 11 10 14 14 C 1.52999 * 109.50383 * 172.82152 * 12 11 10 15 15 O 1.43098 * 109.22524 * 52.90058 * 12 11 10 16 16 C 1.42064 * 114.33375 * 298.84674 * 15 12 11 17 17 C 1.54487 * 110.38779 * 182.83786 * 16 15 12 18 18 C 1.55285 * 101.42370 * 83.74021 * 17 16 15 19 19 N 1.47492 * 104.77363 * 36.69666 * 18 17 16 20 20 C 1.36933 * 125.66330 * 155.88455 * 19 18 17 21 21 H 1.07997 * 120.00071 * 179.69336 * 20 19 18 22 22 C 1.38815 * 119.99898 * 359.69143 * 20 19 18 23 23 N 1.31619 * 120.00175 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99770 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47065 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.47206 * 299.99516 * 24 22 20 27 27 H 1.48505 * 109.47294 * 59.99859 * 24 22 20 28 28 C 1.47183 * 108.66953 * 335.61894 * 19 18 17 29 29 C 1.47312 * 121.06452 * 179.83084 * 10 8 7 30 30 H 1.09000 * 109.47053 * 55.02693 * 1 2 3 31 31 H 1.09001 * 109.47157 * 175.02036 * 1 2 3 32 32 H 1.09003 * 109.47055 * 295.02508 * 1 2 3 33 33 H 1.08997 * 109.46831 * 240.00254 * 2 1 3 34 34 H 1.08997 * 109.47322 * 119.99834 * 2 1 3 35 35 H 1.08003 * 125.56547 * 0.05111 * 4 3 2 36 36 H 1.08001 * 126.06577 * 180.02562 * 5 4 3 37 37 H 1.08009 * 126.45778 * 180.30486 * 6 5 4 38 38 H 1.08996 * 109.62577 * 248.56775 * 11 10 8 39 39 H 1.09000 * 109.62112 * 9.13441 * 11 10 8 40 40 H 1.08998 * 109.47570 * 60.00685 * 14 12 11 41 41 H 1.09009 * 109.46517 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47456 * 299.99737 * 14 12 11 43 43 H 1.08995 * 111.01613 * 201.99563 * 17 16 15 44 44 H 1.08996 * 111.01069 * 325.84029 * 17 16 15 45 45 H 1.08999 * 110.50911 * 277.83608 * 18 17 16 46 46 H 1.09004 * 110.32313 * 155.46206 * 18 17 16 47 47 H 0.96998 * 120.00069 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.90400 * 121.14741 * 28 19 18 49 49 H 1.08997 * 109.90656 * 242.22003 * 28 19 18 50 50 H 1.08994 * 109.68212 * 109.69004 * 29 10 8 51 51 H 1.09001 * 109.68020 * 349.14184 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4361 2.0719 -1.0887 5 6 2.8140 3.3137 -0.7013 6 6 2.6214 3.4091 0.6804 7 6 2.1296 2.1933 1.1058 8 6 1.7824 1.8331 2.4846 9 8 1.8039 0.6672 2.8327 10 7 1.4396 2.7933 3.3660 11 6 1.4090 4.2107 2.9712 12 6 0.0547 4.8014 3.3796 13 1 -0.7359 4.3449 2.7842 14 6 0.0646 6.3130 3.1432 15 8 -0.1761 4.5361 4.7666 16 6 -0.2292 3.1555 5.0976 17 6 -0.5517 2.9737 6.5974 18 6 -2.1007 3.0823 6.5944 19 7 -2.5218 2.4197 5.3457 20 6 -3.7490 1.8581 5.1145 21 1 -3.9618 1.3991 4.1604 22 6 -4.7197 1.8787 6.1066 23 7 -4.4607 2.4385 7.2693 24 14 -6.3937 1.1120 5.7915 25 1 -7.2432 1.2640 6.9999 26 1 -7.0415 1.7928 4.6416 27 1 -6.2270 -0.3310 5.4825 28 6 -1.4058 2.4681 4.3873 29 6 1.0831 2.4577 4.7553 30 1 -0.3633 0.5890 -0.8421 31 1 -0.3633 -1.0238 -0.0892 32 1 -0.3633 0.4347 0.9312 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.4629 1.6941 -2.1001 36 1 3.1921 4.0933 -1.3460 37 1 2.8219 4.2720 1.2982 38 1 2.2106 4.7490 3.4769 39 1 1.5335 4.2928 1.8915 40 1 0.2449 6.5145 2.0872 41 1 -0.8989 6.7324 3.4333 42 1 0.8544 6.7691 3.7402 43 1 -0.2253 1.9959 6.9517 44 1 -0.1067 3.7712 7.1924 45 1 -2.4103 4.1274 6.5919 46 1 -2.5183 2.5644 7.4578 47 1 -5.1388 2.4526 7.9627 48 1 -1.1234 1.4567 4.0952 49 1 -1.6973 3.0407 3.5068 50 1 1.8680 2.8012 5.4290 51 1 0.9613 1.3789 4.8527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071240384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:48 Heat of formation + Delta-G solvation = 7.360377 kcal Electronic energy + Delta-G solvation = -32938.050010 eV Core-core repulsion = 28839.522400 eV Total energy + Delta-G solvation = -4098.527610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.62736 -41.49669 -39.65070 -38.01273 -36.15444 -35.00822 -34.83294 -33.02514 -31.28164 -30.90560 -30.30481 -29.38358 -27.75479 -27.34678 -25.60130 -24.55921 -23.24961 -22.89064 -22.08677 -21.67071 -20.52139 -20.01909 -19.06028 -18.34362 -17.94710 -17.60610 -16.89351 -16.72982 -16.44889 -16.15911 -15.90002 -15.65240 -15.48596 -15.13001 -15.03319 -14.82603 -14.65045 -14.20426 -14.12955 -13.85000 -13.62275 -13.50859 -13.36260 -13.19742 -13.08488 -13.05687 -12.96641 -12.81040 -12.70405 -12.42891 -12.31873 -12.26119 -12.17285 -12.05424 -11.93762 -11.66121 -11.49402 -11.03110 -10.90049 -10.79722 -9.67341 -9.65858 -9.11995 -8.97442 -7.82765 -5.28845 0.48548 1.41377 1.43178 1.45397 1.52106 1.84442 2.14206 2.24518 2.43961 2.58691 3.24926 3.35127 3.50784 3.58896 3.74273 3.75025 3.84163 3.95047 4.00877 4.05455 4.16393 4.18954 4.30926 4.34247 4.38914 4.40960 4.50476 4.51372 4.55619 4.64273 4.66692 4.66960 4.76234 4.78417 4.88640 4.95967 5.00189 5.04815 5.08094 5.14369 5.22422 5.30373 5.32713 5.36332 5.56693 5.73819 5.84762 6.01333 6.21851 6.24092 6.29356 6.36060 6.98050 7.04151 7.68946 8.34134 9.18696 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003636 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.829562 B = 7699.460455 C = 8844.262233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 N -0.416 5.416 4 C 0.022 3.978 5 C -0.212 4.212 6 C -0.149 4.149 7 C -0.085 4.085 8 C 0.582 3.418 9 O -0.586 6.586 10 N -0.601 5.601 11 C 0.054 3.946 12 C 0.060 3.940 13 H 0.037 0.963 14 C -0.133 4.133 15 O -0.369 6.369 16 C 0.111 3.889 17 C -0.117 4.117 18 C 0.162 3.838 19 N -0.621 5.621 20 C -0.250 4.250 21 H 0.071 0.929 22 C -0.059 4.059 23 N -0.944 5.944 24 Si 0.982 3.018 25 H -0.286 1.286 26 H -0.279 1.279 27 H -0.277 1.277 28 C 0.127 3.873 29 C 0.109 3.891 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.203 0.797 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.098 0.902 45 H -0.012 1.012 46 H 0.079 0.921 47 H 0.251 0.749 48 H 0.011 0.989 49 H 0.013 0.987 50 H 0.101 0.899 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.375 4.455 -17.305 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.090 5.090 4 C -0.113 4.113 5 C -0.235 4.235 6 C -0.176 4.176 7 C -0.197 4.197 8 C 0.374 3.626 9 O -0.468 6.468 10 N -0.332 5.332 11 C -0.066 4.066 12 C 0.002 3.998 13 H 0.055 0.945 14 C -0.190 4.190 15 O -0.288 6.288 16 C 0.070 3.930 17 C -0.156 4.156 18 C 0.037 3.963 19 N -0.347 5.347 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.252 4.252 23 N -0.593 5.593 24 Si 0.810 3.190 25 H -0.212 1.212 26 H -0.205 1.205 27 H -0.203 1.203 28 C 0.002 3.998 29 C -0.014 4.014 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.040 0.960 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.220 0.780 36 H 0.189 0.811 37 H 0.192 0.808 38 H 0.123 0.877 39 H 0.160 0.840 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.006 0.994 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.030 0.970 50 H 0.119 0.881 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.027 3.575 -16.849 24.932 hybrid contribution -1.469 -0.781 0.166 1.672 sum 16.557 2.794 -16.683 23.670 Atomic orbital electron populations 1.22043 0.94559 1.03893 1.01212 1.22113 0.95366 0.79642 1.05665 1.44279 1.46708 1.11865 1.06144 1.22742 1.02558 0.93398 0.92591 1.21235 1.09373 0.98047 0.94884 1.21990 1.03375 0.95329 0.96864 1.19907 1.17801 0.94462 0.87571 1.17490 0.76169 0.84361 0.84612 1.90753 1.56087 1.19815 1.80140 1.47897 1.66622 1.08051 1.10629 1.23610 0.98253 0.79210 1.05577 1.22763 0.95648 0.98923 0.82430 0.94473 1.21712 1.03233 0.90079 1.04007 1.87842 1.92667 1.22343 1.25977 1.21991 0.92333 0.82178 0.96514 1.22907 0.97439 1.02714 0.92529 1.21762 0.90080 0.93838 0.90581 1.44791 1.10706 1.66712 1.12506 1.19329 0.89384 1.30141 0.99007 0.91124 1.25633 1.02092 1.01549 0.95938 1.70020 1.34137 1.49916 1.05218 0.85110 0.78824 0.78251 0.76859 1.21159 1.20483 1.20315 1.21742 0.89151 0.96264 0.92690 1.22051 0.95998 1.01032 0.82281 0.90982 0.89085 0.95980 0.85258 0.90217 0.78032 0.81113 0.80784 0.87722 0.84000 0.87832 0.93022 0.90028 0.89538 0.88390 0.99397 0.90301 0.93972 0.97097 0.96956 0.88066 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 10.23 71.98 0.74 -2.79 16 2 C 0.09 1.88 6.37 86.38 0.55 2.43 16 3 N -0.42 -9.05 2.76 -511.02 -1.41 -10.46 16 4 C 0.02 0.33 11.36 83.48 0.95 1.28 16 5 C -0.21 -3.12 10.81 22.01 0.24 -2.88 16 6 C -0.15 -2.80 8.58 22.57 0.19 -2.61 16 7 C -0.08 -2.17 6.54 40.35 0.26 -1.91 16 8 C 0.58 18.77 7.57 86.45 0.65 19.42 16 9 O -0.59 -22.78 14.63 -4.34 -0.06 -22.84 16 10 N -0.60 -17.81 2.94 -823.13 -2.42 -20.23 16 11 C 0.05 1.22 4.80 86.35 0.41 1.63 16 12 C 0.06 1.69 3.17 30.69 0.10 1.79 16 13 H 0.04 1.26 6.23 -2.39 -0.01 1.24 16 14 C -0.13 -2.67 9.57 71.98 0.69 -1.98 16 15 O -0.37 -13.24 9.90 -148.97 -1.48 -14.72 16 16 C 0.11 4.24 0.80 -10.22 -0.01 4.23 16 17 C -0.12 -4.68 6.23 31.88 0.20 -4.48 16 18 C 0.16 8.54 5.91 86.97 0.51 9.05 16 19 N -0.62 -34.91 3.40 -691.94 -2.35 -37.26 16 20 C -0.25 -15.04 10.28 84.03 0.86 -14.18 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 23 N -0.94 -57.80 10.09 21.65 0.22 -57.59 16 24 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 28 C 0.13 6.06 6.32 86.48 0.55 6.60 16 29 C 0.11 3.59 5.20 86.07 0.45 4.03 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.08 2.07 6.59 -2.39 -0.02 2.05 16 35 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.18 2.42 5.70 -2.91 -0.02 2.41 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.14 2.61 3.51 -2.39 -0.01 2.60 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 3.26 8.01 -2.39 -0.02 3.24 16 44 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 46 H 0.08 4.61 5.86 -2.38 -0.01 4.60 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.01 0.56 7.61 -2.39 -0.02 0.54 16 49 H 0.01 0.62 6.02 -2.39 -0.01 0.61 16 50 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 51 H 0.08 3.06 6.83 -2.39 -0.02 3.04 16 Total: -1.00 -80.08 391.96 3.27 -76.82 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.93 Total: 20.41 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.81 Total: 16.62 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.97 Total: -125.54 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.54 Total: -37.56 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.08 3.27 -76.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071240384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.177 kcal (2) G-P(sol) polarization free energy of solvation -80.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds