Wall clock time and date at job start Wed Apr 1 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46692 * 2 1 4 4 C 1.36450 * 124.84795 * 264.69297 * 3 2 1 5 5 C 1.34493 * 108.85424 * 179.88751 * 4 3 2 6 6 C 1.46680 * 106.33128 * 0.35995 * 5 4 3 7 7 C 1.47265 * 126.94104 * 179.80828 * 6 5 4 8 8 O 1.21626 * 120.00395 * 221.39636 * 7 6 5 9 9 N 1.34775 * 119.99825 * 41.39334 * 7 6 5 10 10 C 1.46983 * 120.74299 * 4.99751 * 9 7 6 11 11 C 1.53627 * 108.19980 * 125.35913 * 10 9 7 12 12 C 1.52485 * 109.76177 * 54.72670 * 11 10 9 13 13 H 1.08997 * 108.33185 * 180.74161 * 12 11 10 14 14 O 1.42667 * 110.67939 * 61.42602 * 12 11 10 15 15 C 1.43090 * 113.87455 * 174.57577 * 14 12 11 16 16 C 1.53230 * 109.40910 * 61.69045 * 15 14 12 17 17 N 1.47166 * 108.70331 * 308.36602 * 16 15 14 18 18 C 1.36938 * 121.20542 * 230.88361 * 17 16 15 19 19 H 1.08007 * 120.00255 * 154.98988 * 18 17 16 20 20 C 1.38811 * 120.00262 * 334.99479 * 18 17 16 21 21 N 1.31621 * 119.99712 * 344.16893 * 20 18 17 22 22 Si 1.86801 * 120.00192 * 164.17458 * 20 18 17 23 23 H 1.48498 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47172 * 119.99734 * 22 20 18 25 25 H 1.48502 * 109.46980 * 239.99552 * 22 20 18 26 26 C 1.47578 * 117.58890 * 50.90996 * 17 16 15 27 27 H 1.09003 * 110.28156 * 186.90062 * 26 17 16 28 28 C 1.46813 * 120.74044 * 185.27667 * 9 7 6 29 29 C 1.34656 * 124.85327 * 84.99893 * 3 2 1 30 30 C 1.50696 * 125.80260 * 359.97438 * 29 3 2 31 31 H 1.09002 * 109.47405 * 60.00565 * 1 2 3 32 32 H 1.09008 * 109.47326 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47478 * 300.00045 * 1 2 3 34 34 H 1.09005 * 109.46902 * 119.99475 * 2 1 3 35 35 H 1.08992 * 109.47117 * 239.99654 * 2 1 3 36 36 H 1.08001 * 125.57341 * 0.03897 * 4 3 2 37 37 H 1.08001 * 126.82737 * 180.14078 * 5 4 3 38 38 H 1.09007 * 109.64083 * 245.08992 * 10 9 7 39 39 H 1.08998 * 109.64263 * 5.70834 * 10 9 7 40 40 H 1.09006 * 109.55347 * 294.56749 * 11 10 9 41 41 H 1.09006 * 109.34310 * 174.75406 * 11 10 9 42 42 H 1.08997 * 109.47815 * 301.71099 * 15 14 12 43 43 H 1.09001 * 109.49123 * 181.67981 * 15 14 12 44 44 H 1.09000 * 109.59659 * 188.60102 * 16 15 14 45 45 H 1.08993 * 109.60056 * 68.13554 * 16 15 14 46 46 H 0.96998 * 119.99681 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.52197 * 354.26337 * 28 9 7 48 48 H 1.09003 * 109.52389 * 114.45563 * 28 9 7 49 49 H 1.09000 * 109.47448 * 90.00208 * 30 29 3 50 50 H 1.09000 * 109.47433 * 210.00139 * 30 29 3 51 51 H 1.09000 * 109.47399 * 329.99848 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3757 2.0818 -1.1150 5 6 2.7719 3.3130 -0.7463 6 6 2.6536 3.3640 0.7149 7 6 2.9751 4.5043 1.5896 8 8 3.5526 4.3184 2.6437 9 7 2.6294 5.7540 1.2220 10 6 1.8363 5.9874 0.0067 11 6 0.5946 6.8052 0.3937 12 6 1.0206 8.0779 1.1176 13 1 0.1234 8.6324 1.3926 14 8 1.8264 8.8942 0.2694 15 6 2.1632 10.1638 0.8371 16 6 2.9810 9.9492 2.1151 17 7 2.2578 9.0087 2.9858 18 6 2.0166 9.3020 4.3014 19 1 1.1824 8.8444 4.8126 20 6 2.8440 10.1876 4.9782 21 7 4.0194 10.5036 4.4772 22 14 2.2894 10.9307 6.5998 23 1 0.9385 10.4182 6.9428 24 1 3.2482 10.5553 7.6699 25 1 2.2405 12.4097 6.4756 26 6 1.8026 7.7376 2.3899 27 1 1.1804 7.1899 3.0978 28 6 3.0418 6.9131 2.0232 29 6 2.1838 2.1389 1.1008 30 6 1.9001 1.7097 2.5172 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5138 -0.8899 36 1 2.3433 1.7094 -2.1283 37 1 3.1130 4.1051 -1.3964 38 1 2.4320 6.5416 -0.7188 39 1 1.5297 5.0324 -0.4198 40 1 -0.0433 6.2119 1.0490 41 1 0.0407 7.0689 -0.5073 42 1 1.2500 10.7084 1.0771 43 1 2.7514 10.7378 0.1212 44 1 3.1090 10.9007 2.6312 45 1 3.9563 9.5351 1.8598 46 1 4.5978 11.1221 4.9503 47 1 3.5337 6.5702 2.9334 48 1 3.7310 7.5288 1.4452 49 1 2.7968 1.2648 2.9486 50 1 1.6050 2.5772 3.1075 51 1 1.0933 0.9768 2.5202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074319898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:44 Heat of formation + Delta-G solvation = 4.078661 kcal Electronic energy + Delta-G solvation = -32379.849257 eV Core-core repulsion = 28281.179341 eV Total energy + Delta-G solvation = -4098.669916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48469 -39.68978 -38.16184 -35.51274 -34.58942 -34.29052 -31.69837 -31.63644 -31.36868 -29.84190 -29.07151 -27.40332 -26.43028 -24.84428 -24.00173 -23.52117 -22.65020 -21.77571 -21.08031 -19.89895 -18.62586 -17.96482 -17.18277 -16.83309 -16.17928 -15.49311 -15.35653 -15.28411 -15.08851 -14.80606 -14.65322 -14.33174 -13.96588 -13.75724 -13.61435 -13.27148 -13.10134 -13.05457 -12.88965 -12.73754 -12.53897 -12.45612 -12.23304 -12.11745 -11.95795 -11.78142 -11.69727 -11.52405 -11.21129 -11.00008 -10.86236 -10.68359 -10.48499 -10.17183 -10.05644 -9.90824 -9.54816 -9.37675 -8.92150 -8.55712 -8.50670 -8.19148 -7.96476 -6.69930 -5.79735 -3.23020 1.96825 2.46654 2.67618 3.37092 3.44665 3.46871 3.50301 3.73949 4.29787 4.42534 4.47175 4.57498 4.63153 4.80955 4.85327 5.05929 5.14963 5.17624 5.20837 5.26249 5.36725 5.39005 5.48977 5.54186 5.60300 5.62172 5.66315 5.79130 5.88159 5.90222 5.93966 6.00078 6.07777 6.14832 6.18911 6.20142 6.28741 6.41847 6.45711 6.53501 6.78053 6.83924 6.88078 7.04334 7.16999 7.18424 7.21313 7.57473 7.75933 7.97585 8.02896 8.36427 8.77093 9.15170 9.76794 10.33707 11.27492 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002982 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.035524 B = 9386.431455 C =10243.774173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.444 5.444 4 C -0.020 4.020 5 C -0.166 4.166 6 C -0.219 4.219 7 C 0.586 3.414 8 O -0.550 6.550 9 N -0.600 5.600 10 C 0.111 3.889 11 C -0.122 4.122 12 C 0.083 3.917 13 H 0.049 0.951 14 O -0.387 6.387 15 C 0.039 3.961 16 C 0.136 3.864 17 N -0.586 5.586 18 C -0.250 4.250 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.135 3.865 27 H 0.073 0.927 28 C 0.107 3.893 29 C 0.089 3.911 30 C -0.087 4.087 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.164 0.836 37 H 0.145 0.855 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.028 0.972 46 H 0.254 0.746 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -18.339 -13.898 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.121 5.121 4 C -0.146 4.146 5 C -0.190 4.190 6 C -0.228 4.228 7 C 0.375 3.625 8 O -0.429 6.429 9 N -0.333 5.333 10 C -0.012 4.012 11 C -0.161 4.161 12 C 0.023 3.977 13 H 0.067 0.933 14 O -0.306 6.306 15 C -0.039 4.039 16 C 0.010 3.990 17 N -0.308 5.308 18 C -0.379 4.379 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.736 3.264 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.027 3.973 27 H 0.092 0.908 28 C -0.016 4.016 29 C -0.026 4.026 30 C -0.145 4.145 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.368 -18.675 -13.424 24.150 hybrid contribution -0.173 0.644 0.896 1.117 sum -7.542 -18.031 -12.528 23.215 Atomic orbital electron populations 1.22189 0.94318 1.02938 1.03438 1.21839 0.95573 0.80681 1.04322 1.43627 1.50888 1.11773 1.05825 1.21623 1.08507 0.93300 0.91147 1.22015 1.06865 0.97125 0.93045 1.20202 1.14470 0.94513 0.93656 1.17462 0.78413 0.81970 0.84697 1.90764 1.42874 1.84858 1.24365 1.48081 1.53068 1.06049 1.26078 1.21892 0.92000 1.00280 0.87053 1.21884 0.97709 0.95563 1.00938 1.22159 0.93185 0.91125 0.91211 0.93338 1.87714 1.71492 1.28862 1.42547 1.23332 0.98913 0.84226 0.97386 1.21516 0.92226 0.96912 0.88310 1.44329 1.66283 1.12578 1.07649 1.19239 1.07774 1.24314 0.86561 0.91270 1.25033 0.94798 1.01834 0.97983 1.70017 1.07913 1.37011 1.39731 0.86162 0.78093 0.78802 0.83367 1.20261 1.21636 1.21572 1.21572 0.94181 0.88350 0.93226 0.90843 1.22264 0.98745 0.84910 0.95720 1.20142 1.02821 0.90488 0.89187 1.20408 1.01788 1.02587 0.89671 0.91717 0.90799 0.91671 0.89374 0.89105 0.81898 0.83687 0.91195 0.89142 0.90704 0.90762 0.94215 0.90214 0.88248 0.95419 0.93558 0.89389 0.91568 0.90362 0.89551 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.10 0.57 6.21 -4.04 -0.03 0.55 16 3 N -0.44 -4.32 2.68 -112.53 -0.30 -4.62 16 4 C -0.02 -0.19 11.32 -16.82 -0.19 -0.38 16 5 C -0.17 -2.01 8.72 -37.50 -0.33 -2.33 16 6 C -0.22 -3.29 5.28 -103.35 -0.55 -3.83 16 7 C 0.59 11.01 7.28 -12.59 -0.09 10.92 16 8 O -0.55 -12.36 15.90 5.25 0.08 -12.28 16 9 N -0.60 -10.91 2.95 -173.81 -0.51 -11.43 16 10 C 0.11 1.63 5.52 -3.45 -0.02 1.61 16 11 C -0.12 -1.79 5.84 -26.67 -0.16 -1.94 16 12 C 0.08 1.53 2.71 -26.91 -0.07 1.46 16 13 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 14 O -0.39 -7.46 9.62 -35.23 -0.34 -7.80 16 15 C 0.04 0.77 6.98 37.28 0.26 1.03 16 16 C 0.14 3.25 4.95 -3.56 -0.02 3.23 16 17 N -0.59 -14.73 2.72 -163.91 -0.45 -15.18 16 18 C -0.25 -6.87 9.71 -15.06 -0.15 -7.02 16 19 H 0.07 1.89 7.88 -52.48 -0.41 1.47 16 20 C 0.00 0.06 5.00 -17.43 -0.09 -0.03 16 21 N -0.90 -26.10 10.98 55.49 0.61 -25.49 16 22 Si 0.91 21.86 29.58 -169.99 -5.03 16.83 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.14 2.93 3.02 -67.10 -0.20 2.73 16 27 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16 28 C 0.11 2.32 5.64 -3.72 -0.02 2.30 16 29 C 0.09 1.13 6.89 -81.89 -0.56 0.57 16 30 C -0.09 -0.99 9.33 36.00 0.34 -0.65 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 33 H 0.06 0.41 7.52 -51.93 -0.39 0.02 16 34 H 0.09 0.46 7.74 -51.93 -0.40 0.06 16 35 H 0.09 0.37 8.11 -51.93 -0.42 -0.05 16 36 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.15 1.60 7.59 -52.49 -0.40 1.20 16 38 H 0.07 1.04 7.96 -51.92 -0.41 0.63 16 39 H 0.09 1.16 4.77 -51.93 -0.25 0.91 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.10 2.62 5.99 -51.93 -0.31 2.30 16 45 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.09 2.20 6.99 -51.93 -0.36 1.83 16 48 H 0.07 1.52 6.59 -51.93 -0.34 1.18 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 1.15 7.72 -51.93 -0.40 0.75 16 51 H 0.06 0.52 7.06 -51.93 -0.37 0.15 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -33.45 392.97 -9.70 -43.15 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.20 Total: 3.17 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.49 Total: 7.71 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.65 Total: -56.71 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.26 Total: -20.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.45 -9.70 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.231 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds