Wall clock time and date at job start Wed Apr 1 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46692 * 2 1 4 4 C 1.36450 * 124.84795 * 264.69297 * 3 2 1 5 5 C 1.34493 * 108.85424 * 179.88751 * 4 3 2 6 6 C 1.46680 * 106.33128 * 0.35995 * 5 4 3 7 7 C 1.47265 * 126.94104 * 179.80828 * 6 5 4 8 8 O 1.21626 * 120.00395 * 221.39636 * 7 6 5 9 9 N 1.34775 * 119.99825 * 41.39334 * 7 6 5 10 10 C 1.46983 * 120.74299 * 4.99751 * 9 7 6 11 11 C 1.53627 * 108.19980 * 125.35913 * 10 9 7 12 12 C 1.52485 * 109.76177 * 54.72670 * 11 10 9 13 13 H 1.08997 * 108.33185 * 180.74161 * 12 11 10 14 14 O 1.42667 * 110.67939 * 61.42602 * 12 11 10 15 15 C 1.43090 * 113.87455 * 174.57577 * 14 12 11 16 16 C 1.53230 * 109.40910 * 61.69045 * 15 14 12 17 17 N 1.47166 * 108.70331 * 308.36602 * 16 15 14 18 18 C 1.36938 * 121.20542 * 230.88361 * 17 16 15 19 19 H 1.08007 * 120.00255 * 154.98988 * 18 17 16 20 20 C 1.38811 * 120.00262 * 334.99479 * 18 17 16 21 21 N 1.31621 * 119.99712 * 344.16893 * 20 18 17 22 22 Si 1.86801 * 120.00192 * 164.17458 * 20 18 17 23 23 H 1.48498 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47172 * 119.99734 * 22 20 18 25 25 H 1.48502 * 109.46980 * 239.99552 * 22 20 18 26 26 C 1.47578 * 117.58890 * 50.90996 * 17 16 15 27 27 H 1.09003 * 110.28156 * 186.90062 * 26 17 16 28 28 C 1.46813 * 120.74044 * 185.27667 * 9 7 6 29 29 C 1.34656 * 124.85327 * 84.99893 * 3 2 1 30 30 C 1.50696 * 125.80260 * 359.97438 * 29 3 2 31 31 H 1.09002 * 109.47405 * 60.00565 * 1 2 3 32 32 H 1.09008 * 109.47326 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47478 * 300.00045 * 1 2 3 34 34 H 1.09005 * 109.46902 * 119.99475 * 2 1 3 35 35 H 1.08992 * 109.47117 * 239.99654 * 2 1 3 36 36 H 1.08001 * 125.57341 * 0.03897 * 4 3 2 37 37 H 1.08001 * 126.82737 * 180.14078 * 5 4 3 38 38 H 1.09007 * 109.64083 * 245.08992 * 10 9 7 39 39 H 1.08998 * 109.64263 * 5.70834 * 10 9 7 40 40 H 1.09006 * 109.55347 * 294.56749 * 11 10 9 41 41 H 1.09006 * 109.34310 * 174.75406 * 11 10 9 42 42 H 1.08997 * 109.47815 * 301.71099 * 15 14 12 43 43 H 1.09001 * 109.49123 * 181.67981 * 15 14 12 44 44 H 1.09000 * 109.59659 * 188.60102 * 16 15 14 45 45 H 1.08993 * 109.60056 * 68.13554 * 16 15 14 46 46 H 0.96998 * 119.99681 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.52197 * 354.26337 * 28 9 7 48 48 H 1.09003 * 109.52389 * 114.45563 * 28 9 7 49 49 H 1.09000 * 109.47448 * 90.00208 * 30 29 3 50 50 H 1.09000 * 109.47433 * 210.00139 * 30 29 3 51 51 H 1.09000 * 109.47399 * 329.99848 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3757 2.0818 -1.1150 5 6 2.7719 3.3130 -0.7463 6 6 2.6536 3.3640 0.7149 7 6 2.9751 4.5043 1.5896 8 8 3.5526 4.3184 2.6437 9 7 2.6294 5.7540 1.2220 10 6 1.8363 5.9874 0.0067 11 6 0.5946 6.8052 0.3937 12 6 1.0206 8.0779 1.1176 13 1 0.1234 8.6324 1.3926 14 8 1.8264 8.8942 0.2694 15 6 2.1632 10.1638 0.8371 16 6 2.9810 9.9492 2.1151 17 7 2.2578 9.0087 2.9858 18 6 2.0166 9.3020 4.3014 19 1 1.1824 8.8444 4.8126 20 6 2.8440 10.1876 4.9782 21 7 4.0194 10.5036 4.4772 22 14 2.2894 10.9307 6.5998 23 1 0.9385 10.4182 6.9428 24 1 3.2482 10.5553 7.6699 25 1 2.2405 12.4097 6.4756 26 6 1.8026 7.7376 2.3899 27 1 1.1804 7.1899 3.0978 28 6 3.0418 6.9131 2.0232 29 6 2.1838 2.1389 1.1008 30 6 1.9001 1.7097 2.5172 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5138 -0.8899 36 1 2.3433 1.7094 -2.1283 37 1 3.1130 4.1051 -1.3964 38 1 2.4320 6.5416 -0.7188 39 1 1.5297 5.0324 -0.4198 40 1 -0.0433 6.2119 1.0490 41 1 0.0407 7.0689 -0.5073 42 1 1.2500 10.7084 1.0771 43 1 2.7514 10.7378 0.1212 44 1 3.1090 10.9007 2.6312 45 1 3.9563 9.5351 1.8598 46 1 4.5978 11.1221 4.9503 47 1 3.5337 6.5702 2.9334 48 1 3.7310 7.5288 1.4452 49 1 2.7968 1.2648 2.9486 50 1 1.6050 2.5772 3.1075 51 1 1.0933 0.9768 2.5202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074319898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:43 Heat of formation + Delta-G solvation = -16.667326 kcal Electronic energy + Delta-G solvation = -32380.748870 eV Core-core repulsion = 28281.179341 eV Total energy + Delta-G solvation = -4099.569529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.39478 -41.21140 -39.71139 -37.06042 -36.45592 -34.96875 -33.47247 -32.99889 -32.57885 -31.21720 -30.19254 -29.17204 -27.53189 -26.15200 -25.64104 -24.66990 -24.11570 -23.06926 -22.43252 -20.98240 -20.08213 -19.19359 -18.88360 -18.17241 -17.36916 -17.10573 -16.94589 -16.72807 -16.42315 -16.11274 -15.97752 -15.53608 -15.45975 -15.14689 -14.85872 -14.60382 -14.37250 -14.18941 -14.06722 -13.89643 -13.84301 -13.62082 -13.52463 -13.30855 -13.06184 -12.97705 -12.87514 -12.66759 -12.60580 -12.46041 -12.38632 -12.23027 -12.06091 -12.05551 -11.84144 -11.64049 -11.21405 -10.87472 -10.76754 -10.52142 -9.69007 -9.38015 -9.04017 -8.71646 -7.92180 -5.39503 0.89753 1.42914 1.44301 1.55360 1.57700 1.85307 2.18055 2.38308 2.48158 2.89854 3.21798 3.46164 3.73134 3.83179 3.88404 4.00974 4.05503 4.13072 4.16905 4.18592 4.20918 4.29495 4.38925 4.45851 4.47894 4.54964 4.59746 4.60824 4.63437 4.65262 4.84358 4.86558 4.88758 4.91305 4.93290 4.97517 5.00730 5.06007 5.12966 5.20575 5.27007 5.30530 5.30545 5.51555 5.60750 5.62411 5.84768 6.18524 6.25795 6.36420 6.45582 6.61929 7.04050 7.30900 7.70837 8.24802 9.12630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002982 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.035524 B = 9386.431455 C =10243.774173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.435 5.435 4 C 0.004 3.996 5 C -0.185 4.185 6 C -0.257 4.257 7 C 0.580 3.420 8 O -0.603 6.603 9 N -0.600 5.600 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.089 3.911 13 H 0.050 0.950 14 O -0.382 6.382 15 C 0.052 3.948 16 C 0.143 3.857 17 N -0.603 5.603 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.134 3.866 27 H 0.059 0.941 28 C 0.126 3.874 29 C 0.086 3.914 30 C -0.084 4.084 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.207 0.793 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.073 0.927 45 H -0.001 1.001 46 H 0.252 0.748 47 H 0.040 0.960 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -20.649 -16.957 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.111 5.111 4 C -0.122 4.122 5 C -0.209 4.209 6 C -0.267 4.267 7 C 0.371 3.629 8 O -0.486 6.486 9 N -0.332 5.332 10 C -0.008 4.008 11 C -0.153 4.153 12 C 0.029 3.971 13 H 0.068 0.932 14 O -0.301 6.301 15 C -0.026 4.026 16 C 0.017 3.983 17 N -0.326 5.326 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.210 1.210 26 C 0.026 3.974 27 H 0.077 0.923 28 C 0.001 3.999 29 C -0.032 4.032 30 C -0.142 4.142 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.223 0.777 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.017 0.983 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.855 -21.018 -16.545 28.507 hybrid contribution 0.609 1.207 1.835 2.279 sum -9.245 -19.811 -14.710 26.351 Atomic orbital electron populations 1.22162 0.93529 1.04135 1.02624 1.22224 0.96150 0.78481 1.06193 1.43928 1.49401 1.12896 1.04841 1.22230 1.05393 0.92058 0.92551 1.22133 1.08511 0.98933 0.91314 1.20024 1.17732 0.94059 0.94880 1.18178 0.77258 0.82921 0.84508 1.90718 1.45251 1.85644 1.26975 1.48116 1.53365 1.04946 1.26744 1.22129 0.91488 1.01859 0.85364 1.21920 0.97887 0.93283 1.02186 1.22169 0.92111 0.92891 0.89902 0.93199 1.87731 1.71568 1.28654 1.42110 1.23179 0.98765 0.84871 0.95763 1.21357 0.91911 0.95067 0.89927 1.44567 1.66421 1.14238 1.07414 1.19520 1.07641 1.24298 0.87865 0.91591 1.25809 0.94838 1.02449 1.01374 1.70179 1.08931 1.37651 1.41136 0.85136 0.77796 0.77957 0.79116 1.19145 1.22178 1.20985 1.21700 0.94078 0.86978 0.94654 0.92274 1.21698 0.98177 0.85965 0.94046 1.20207 1.02286 0.90285 0.90375 1.20364 1.02752 1.02108 0.88944 0.91839 0.88631 0.93151 0.88649 0.86250 0.77674 0.82960 0.90912 0.86374 0.89800 0.87087 0.93499 0.87279 0.90908 0.98286 0.93901 0.94146 0.93366 0.90696 0.92492 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 71.98 0.74 -0.31 16 2 C 0.09 0.67 6.21 86.38 0.54 1.21 16 3 N -0.43 -6.98 2.68 -509.92 -1.37 -8.35 16 4 C 0.00 0.07 11.32 83.12 0.94 1.01 16 5 C -0.19 -4.04 8.72 23.62 0.21 -3.83 16 6 C -0.26 -7.65 5.28 -19.04 -0.10 -7.75 16 7 C 0.58 22.93 7.28 86.62 0.63 23.56 16 8 O -0.60 -29.43 15.90 -4.11 -0.07 -29.49 16 9 N -0.60 -22.64 2.95 -822.05 -2.43 -25.07 16 10 C 0.11 3.15 5.52 86.50 0.48 3.63 16 11 C -0.11 -3.07 5.84 30.63 0.18 -2.89 16 12 C 0.09 3.20 2.71 30.48 0.08 3.29 16 13 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 14 O -0.38 -14.22 9.62 -148.98 -1.43 -15.65 16 15 C 0.05 2.02 6.98 72.06 0.50 2.52 16 16 C 0.14 7.13 4.95 86.33 0.43 7.56 16 17 N -0.60 -31.81 2.72 -672.49 -1.83 -33.64 16 18 C -0.26 -15.13 9.71 84.03 0.82 -14.32 16 19 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 20 C -0.05 -2.84 5.00 84.86 0.42 -2.41 16 21 N -0.93 -56.59 10.98 21.65 0.24 -56.35 16 22 Si 0.97 46.34 29.58 68.60 2.03 48.37 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.13 6.06 3.02 44.94 0.14 6.19 16 27 H 0.06 2.80 7.99 -2.39 -0.02 2.78 16 28 C 0.13 5.87 5.64 86.42 0.49 6.36 16 29 C 0.09 2.09 6.89 41.78 0.29 2.37 16 30 C -0.08 -1.91 9.33 71.23 0.66 -1.24 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 33 H 0.05 0.48 7.52 -2.39 -0.02 0.46 16 34 H 0.10 0.63 7.74 -2.38 -0.02 0.61 16 35 H 0.12 0.30 8.11 -2.39 -0.02 0.28 16 36 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.15 2.98 7.59 -2.91 -0.02 2.96 16 38 H 0.07 2.02 7.96 -2.38 -0.02 2.00 16 39 H 0.12 2.72 4.77 -2.39 -0.01 2.71 16 40 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.07 4.02 5.99 -2.39 -0.01 4.01 16 45 H 0.00 -0.05 7.18 -2.39 -0.02 -0.07 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.04 2.22 6.99 -2.39 -0.02 2.21 16 48 H 0.05 2.38 6.59 -2.39 -0.02 2.36 16 49 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.06 1.62 7.72 -2.39 -0.02 1.60 16 51 H 0.09 1.43 7.06 -2.39 -0.02 1.41 16 Total: -1.00 -79.98 392.97 3.50 -76.48 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.92 Total: 18.76 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 7.43 Total: 24.94 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.39 Total: -123.41 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.50 Total: -45.15 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -79.98 3.50 -76.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.814 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds