Wall clock time and date at job start Wed Apr 1 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47456 * 2 1 4 4 C 1.36448 * 124.85085 * 90.01985 * 3 2 1 5 5 C 1.50710 * 125.57211 * 0.03942 * 4 3 2 6 6 C 1.34481 * 108.85749 * 180.02562 * 4 3 2 7 7 C 1.46687 * 106.33179 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94223 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00053 * 140.06112 * 8 7 6 10 10 N 1.34778 * 120.00253 * 320.06354 * 8 7 6 11 11 C 1.44962 * 117.33855 * 5.60192 * 10 8 7 12 12 C 1.51956 * 111.93982 * 203.73122 * 11 10 8 13 13 O 1.41322 * 111.60681 * 319.69792 * 12 11 10 14 14 C 1.40855 * 118.31102 * 56.89384 * 13 12 11 15 15 H 1.09004 * 109.53886 * 188.63183 * 14 13 12 16 16 C 1.53904 * 110.30276 * 68.00701 * 14 13 12 17 17 N 1.46765 * 107.62875 * 221.40908 * 16 14 13 18 18 C 1.36944 * 125.36677 * 178.78808 * 17 16 14 19 19 H 1.07997 * 120.00383 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99480 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00491 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47148 * 59.99995 * 22 20 18 24 24 H 1.48502 * 109.47304 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46977 * 300.00008 * 22 20 18 26 26 C 1.46872 * 109.27558 * 358.81064 * 17 16 14 27 27 C 1.44555 * 117.33677 * 185.34296 * 10 8 7 28 28 H 1.08999 * 109.63861 * 286.46597 * 27 10 8 29 29 C 1.34656 * 124.85287 * 269.71943 * 3 2 1 30 30 C 1.50698 * 125.79615 * 359.97438 * 29 3 2 31 31 H 1.09001 * 109.47498 * 300.00625 * 1 2 3 32 32 H 1.08997 * 109.47690 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.47019 * 59.99643 * 1 2 3 34 34 H 1.09010 * 109.46588 * 120.00039 * 2 1 3 35 35 H 1.08993 * 109.47214 * 239.99423 * 2 1 3 36 36 H 1.09001 * 109.46628 * 89.99644 * 5 4 3 37 37 H 1.08996 * 109.46724 * 209.99489 * 5 4 3 38 38 H 1.08997 * 109.46626 * 329.99571 * 5 4 3 39 39 H 1.08003 * 126.83732 * 180.02562 * 6 4 3 40 40 H 1.08997 * 108.98824 * 324.36661 * 11 10 8 41 41 H 1.09004 * 108.98208 * 83.10050 * 11 10 8 42 42 H 1.09004 * 109.05247 * 80.24140 * 12 11 10 43 43 H 1.08991 * 109.05511 * 199.14664 * 12 11 10 44 44 H 1.09000 * 109.82669 * 340.93833 * 16 14 13 45 45 H 1.09006 * 109.82218 * 101.79836 * 16 14 13 46 46 H 0.96998 * 120.00491 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.07019 * 137.03340 * 26 17 16 48 48 H 1.09000 * 110.06673 * 258.50335 * 26 17 16 49 49 H 1.08995 * 109.47534 * 89.99870 * 30 29 3 50 50 H 1.09007 * 109.47044 * 209.99946 * 30 29 3 51 51 H 1.08998 * 109.47459 * 329.99211 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2787 2.1161 1.1198 5 6 2.1116 1.6396 2.5397 6 6 2.7090 3.3352 0.7492 7 6 2.7117 3.3434 -0.7176 8 6 3.1046 4.4584 -1.5957 9 8 3.7444 4.2399 -2.6068 10 7 2.7554 5.7210 -1.2790 11 6 2.1032 5.9308 -0.0015 12 6 1.2660 7.1989 0.0071 13 8 1.9160 8.2562 -0.6687 14 6 2.2974 8.0573 -2.0100 15 1 2.9152 8.8921 -2.3410 16 6 1.0527 7.9504 -2.9089 17 7 1.2939 6.8728 -3.8757 18 6 0.4090 6.4543 -4.8334 19 1 0.6773 5.6498 -5.5020 20 6 -0.8329 7.0643 -4.9446 21 7 -1.1598 8.0451 -4.1300 22 14 -2.0405 6.4931 -6.2504 23 1 -2.3629 5.0599 -6.0335 24 1 -3.2842 7.2998 -6.1613 25 1 -1.4341 6.6661 -7.5949 26 6 2.6338 6.3135 -3.6540 27 6 3.0669 6.7564 -2.2384 28 1 4.1388 6.9542 -2.2289 29 6 2.2800 2.1048 -1.1050 30 6 2.1206 1.6316 -2.5268 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 3.0404 1.1826 2.8812 37 1 1.8662 2.4864 3.1806 38 1 1.3074 0.9052 2.5841 39 1 2.9964 4.1464 1.4017 40 1 1.4580 5.0785 0.2115 41 1 2.8628 6.0021 0.7770 42 1 0.3117 6.9986 -0.4802 43 1 1.0814 7.4965 1.0392 44 1 0.1781 7.7143 -2.3028 45 1 0.8946 8.8920 -3.4348 46 1 -2.0278 8.4711 -4.2075 47 1 2.5991 5.2255 -3.7111 48 1 3.3298 6.7046 -4.3961 49 1 1.1133 1.8597 -2.8750 50 1 2.8478 2.1376 -3.1619 51 1 2.2857 0.5551 -2.5722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083135004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:07 Heat of formation + Delta-G solvation = 17.753435 kcal Electronic energy + Delta-G solvation = -33063.691435 eV Core-core repulsion = 28965.614502 eV Total energy + Delta-G solvation = -4098.076933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60716 -40.26267 -37.98824 -35.77606 -34.68793 -34.10821 -32.72793 -32.26931 -29.92640 -29.52242 -29.17498 -27.82511 -27.22627 -25.03767 -24.25950 -23.91383 -23.00157 -21.80178 -20.64748 -19.61360 -18.94702 -17.77683 -17.20568 -16.84352 -16.40079 -16.10130 -15.48758 -15.26691 -15.03263 -14.73923 -14.55011 -14.37084 -13.89976 -13.79429 -13.58031 -13.36440 -13.33077 -13.12725 -13.00902 -12.70920 -12.51454 -12.42050 -12.18923 -12.14748 -11.97044 -11.82546 -11.55853 -11.51897 -11.41713 -11.10232 -10.98055 -10.82774 -10.54005 -10.49439 -10.17849 -10.04842 -9.64145 -9.26887 -8.83728 -8.54789 -8.42939 -8.02429 -7.86529 -6.72411 -5.64240 -2.97034 2.01574 2.43791 2.71132 3.35164 3.43800 3.47880 3.49350 3.69326 4.26711 4.37876 4.55521 4.57451 4.69312 4.81480 4.86766 5.01907 5.04958 5.11937 5.24974 5.29554 5.30663 5.33944 5.36401 5.44570 5.52747 5.59980 5.60838 5.67178 5.70113 5.75464 5.79269 5.82783 5.89568 5.96708 5.99105 6.09242 6.14907 6.21750 6.30578 6.43957 6.71589 6.87046 6.94955 7.15216 7.28487 7.31685 7.52243 7.60298 7.79444 7.81598 8.02954 8.33111 8.71188 9.29418 9.90072 10.54475 11.47081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.004165 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.656353 B = 6720.662259 C = 8000.728109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.439 5.439 4 C 0.007 3.993 5 C -0.081 4.081 6 C -0.167 4.167 7 C -0.223 4.223 8 C 0.589 3.411 9 O -0.539 6.539 10 N -0.580 5.580 11 C 0.082 3.918 12 C 0.057 3.943 13 O -0.372 6.372 14 C 0.069 3.931 15 H 0.108 0.892 16 C 0.154 3.846 17 N -0.602 5.602 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.119 3.881 27 C 0.112 3.888 28 H 0.071 0.929 29 C 0.100 3.900 30 C -0.097 4.097 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.145 0.855 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.252 0.748 47 H 0.074 0.926 48 H 0.025 0.975 49 H 0.077 0.923 50 H 0.099 0.901 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -14.049 15.191 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.117 5.117 4 C -0.101 4.101 5 C -0.139 4.139 6 C -0.191 4.191 7 C -0.233 4.233 8 C 0.379 3.621 9 O -0.417 6.417 10 N -0.312 5.312 11 C -0.041 4.041 12 C -0.021 4.021 13 O -0.290 6.290 14 C 0.010 3.990 15 H 0.126 0.874 16 C 0.029 3.971 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.741 3.259 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.007 4.007 27 C 0.007 3.993 28 H 0.089 0.911 29 C -0.015 4.015 30 C -0.154 4.154 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.163 0.837 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.708 -14.198 14.719 21.232 hybrid contribution -0.851 -0.460 -0.700 1.194 sum 4.857 -14.658 14.019 20.856 Atomic orbital electron populations 1.22171 0.94187 1.02904 1.03586 1.21826 0.95704 0.80850 1.04206 1.43561 1.51263 1.11796 1.05038 1.20126 1.08769 0.92683 0.88521 1.20294 1.01836 1.01879 0.89852 1.21860 1.07565 0.96777 0.92920 1.20066 1.15301 0.94524 0.93366 1.17444 0.78692 0.81780 0.84166 1.90683 1.39760 1.84369 1.26935 1.46431 1.59288 1.07031 1.18457 1.21820 0.97070 1.00128 0.85115 1.22263 0.95642 0.86670 0.97497 1.86843 1.77829 1.38980 1.25315 1.22968 0.97738 0.95642 0.82637 0.87411 1.21644 0.92306 0.92882 0.90284 1.44215 1.12538 1.38669 1.37500 1.19003 0.93999 1.14160 1.07680 0.90538 1.24765 0.97702 0.98619 0.99433 1.69944 1.21652 1.26269 1.39384 0.86217 0.80633 0.77688 0.81346 1.21374 1.21657 1.21172 1.21962 0.87686 1.00175 0.90897 1.21753 0.98483 0.88674 0.90382 0.91148 1.20127 1.01669 0.90740 0.89010 1.20554 1.04346 1.00758 0.89769 0.91796 0.90795 0.91495 0.89322 0.89180 0.91350 0.90153 0.91973 0.83736 0.89072 0.92337 0.92235 0.88265 0.92702 0.93165 0.93811 0.90814 0.95705 0.90479 0.88247 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.10 0.74 6.10 -4.04 -0.02 0.71 16 3 N -0.44 -5.05 2.69 -107.96 -0.29 -5.34 16 4 C 0.01 0.07 6.85 -81.86 -0.56 -0.49 16 5 C -0.08 -0.59 9.81 36.01 0.35 -0.23 16 6 C -0.17 -2.19 8.58 -37.50 -0.32 -2.51 16 7 C -0.22 -3.64 5.28 -103.35 -0.55 -4.19 16 8 C 0.59 11.37 6.71 -12.59 -0.08 11.29 16 9 O -0.54 -11.64 12.93 5.25 0.07 -11.58 16 10 N -0.58 -10.88 3.08 -169.84 -0.52 -11.41 16 11 C 0.08 1.28 4.98 -5.40 -0.03 1.25 16 12 C 0.06 0.92 6.72 36.63 0.25 1.17 16 13 O -0.37 -7.07 10.24 -34.45 -0.35 -7.43 16 14 C 0.07 1.41 3.82 -26.33 -0.10 1.31 16 15 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 16 C 0.15 3.89 5.02 -3.43 -0.02 3.87 16 17 N -0.60 -16.15 3.39 -171.22 -0.58 -16.73 16 18 C -0.22 -6.37 10.25 -15.06 -0.15 -6.53 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 21 N -0.92 -27.62 10.26 55.49 0.57 -27.05 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.12 2.80 6.29 -3.04 -0.02 2.78 16 27 C 0.11 2.26 3.38 -68.24 -0.23 2.03 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.10 1.45 6.88 -81.89 -0.56 0.89 16 30 C -0.10 -1.32 9.86 36.00 0.35 -0.97 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.09 0.51 7.51 -51.92 -0.39 0.12 16 35 H 0.09 0.62 6.87 -51.93 -0.36 0.26 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.38 7.60 -51.93 -0.39 -0.02 16 39 H 0.15 1.65 6.47 -52.48 -0.34 1.31 16 40 H 0.09 1.37 5.60 -51.93 -0.29 1.08 16 41 H 0.06 0.77 7.14 -51.93 -0.37 0.40 16 42 H 0.06 1.13 6.81 -51.93 -0.35 0.77 16 43 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 1.53 5.74 -51.93 -0.30 1.23 16 45 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.07 1.84 5.11 -51.93 -0.27 1.58 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.10 1.58 6.68 -51.93 -0.35 1.24 16 51 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 LS Contribution 387.20 15.07 5.83 5.83 Total: -1.00 -34.84 387.20 -9.64 -44.48 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.93 Total: 2.42 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.41 Total: 9.17 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.82 Total: -60.53 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.28 Total: -19.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.84 -9.64 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083135004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.230 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds