Wall clock time and date at job start Wed Apr 1 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47456 * 2 1 4 4 C 1.36448 * 124.85085 * 90.01985 * 3 2 1 5 5 C 1.50710 * 125.57211 * 0.03942 * 4 3 2 6 6 C 1.34481 * 108.85749 * 180.02562 * 4 3 2 7 7 C 1.46687 * 106.33179 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94223 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00053 * 140.06112 * 8 7 6 10 10 N 1.34778 * 120.00253 * 320.06354 * 8 7 6 11 11 C 1.44962 * 117.33855 * 5.60192 * 10 8 7 12 12 C 1.51956 * 111.93982 * 203.73122 * 11 10 8 13 13 O 1.41322 * 111.60681 * 319.69792 * 12 11 10 14 14 C 1.40855 * 118.31102 * 56.89384 * 13 12 11 15 15 H 1.09004 * 109.53886 * 188.63183 * 14 13 12 16 16 C 1.53904 * 110.30276 * 68.00701 * 14 13 12 17 17 N 1.46765 * 107.62875 * 221.40908 * 16 14 13 18 18 C 1.36944 * 125.36677 * 178.78808 * 17 16 14 19 19 H 1.07997 * 120.00383 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99480 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00491 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47148 * 59.99995 * 22 20 18 24 24 H 1.48502 * 109.47304 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46977 * 300.00008 * 22 20 18 26 26 C 1.46872 * 109.27558 * 358.81064 * 17 16 14 27 27 C 1.44555 * 117.33677 * 185.34296 * 10 8 7 28 28 H 1.08999 * 109.63861 * 286.46597 * 27 10 8 29 29 C 1.34656 * 124.85287 * 269.71943 * 3 2 1 30 30 C 1.50698 * 125.79615 * 359.97438 * 29 3 2 31 31 H 1.09001 * 109.47498 * 300.00625 * 1 2 3 32 32 H 1.08997 * 109.47690 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.47019 * 59.99643 * 1 2 3 34 34 H 1.09010 * 109.46588 * 120.00039 * 2 1 3 35 35 H 1.08993 * 109.47214 * 239.99423 * 2 1 3 36 36 H 1.09001 * 109.46628 * 89.99644 * 5 4 3 37 37 H 1.08996 * 109.46724 * 209.99489 * 5 4 3 38 38 H 1.08997 * 109.46626 * 329.99571 * 5 4 3 39 39 H 1.08003 * 126.83732 * 180.02562 * 6 4 3 40 40 H 1.08997 * 108.98824 * 324.36661 * 11 10 8 41 41 H 1.09004 * 108.98208 * 83.10050 * 11 10 8 42 42 H 1.09004 * 109.05247 * 80.24140 * 12 11 10 43 43 H 1.08991 * 109.05511 * 199.14664 * 12 11 10 44 44 H 1.09000 * 109.82669 * 340.93833 * 16 14 13 45 45 H 1.09006 * 109.82218 * 101.79836 * 16 14 13 46 46 H 0.96998 * 120.00491 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.07019 * 137.03340 * 26 17 16 48 48 H 1.09000 * 110.06673 * 258.50335 * 26 17 16 49 49 H 1.08995 * 109.47534 * 89.99870 * 30 29 3 50 50 H 1.09007 * 109.47044 * 209.99946 * 30 29 3 51 51 H 1.08998 * 109.47459 * 329.99211 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2787 2.1161 1.1198 5 6 2.1116 1.6396 2.5397 6 6 2.7090 3.3352 0.7492 7 6 2.7117 3.3434 -0.7176 8 6 3.1046 4.4584 -1.5957 9 8 3.7444 4.2399 -2.6068 10 7 2.7554 5.7210 -1.2790 11 6 2.1032 5.9308 -0.0015 12 6 1.2660 7.1989 0.0071 13 8 1.9160 8.2562 -0.6687 14 6 2.2974 8.0573 -2.0100 15 1 2.9152 8.8921 -2.3410 16 6 1.0527 7.9504 -2.9089 17 7 1.2939 6.8728 -3.8757 18 6 0.4090 6.4543 -4.8334 19 1 0.6773 5.6498 -5.5020 20 6 -0.8329 7.0643 -4.9446 21 7 -1.1598 8.0451 -4.1300 22 14 -2.0405 6.4931 -6.2504 23 1 -2.3629 5.0599 -6.0335 24 1 -3.2842 7.2998 -6.1613 25 1 -1.4341 6.6661 -7.5949 26 6 2.6338 6.3135 -3.6540 27 6 3.0669 6.7564 -2.2384 28 1 4.1388 6.9542 -2.2289 29 6 2.2800 2.1048 -1.1050 30 6 2.1206 1.6316 -2.5268 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 3.0404 1.1826 2.8812 37 1 1.8662 2.4864 3.1806 38 1 1.3074 0.9052 2.5841 39 1 2.9964 4.1464 1.4017 40 1 1.4580 5.0785 0.2115 41 1 2.8628 6.0021 0.7770 42 1 0.3117 6.9986 -0.4802 43 1 1.0814 7.4965 1.0392 44 1 0.1781 7.7143 -2.3028 45 1 0.8946 8.8920 -3.4348 46 1 -2.0278 8.4711 -4.2075 47 1 2.5991 5.2255 -3.7111 48 1 3.3298 6.7046 -4.3961 49 1 1.1133 1.8597 -2.8750 50 1 2.8478 2.1376 -3.1619 51 1 2.2857 0.5551 -2.5722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083135004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:06 Heat of formation + Delta-G solvation = -4.697501 kcal Electronic energy + Delta-G solvation = -33064.664981 eV Core-core repulsion = 28965.614502 eV Total energy + Delta-G solvation = -4099.050479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.65795 -41.71299 -39.50289 -37.61390 -36.11397 -35.03327 -34.22457 -33.61773 -31.71313 -30.48602 -30.06305 -29.55741 -28.87582 -26.72029 -25.59727 -24.95756 -24.33986 -23.04718 -22.22879 -20.99536 -20.33963 -19.08569 -18.97463 -18.22479 -18.01393 -17.19261 -16.89691 -16.83891 -16.29137 -16.07351 -16.05112 -15.67008 -15.50793 -15.20500 -14.95198 -14.43241 -14.29086 -14.21578 -14.08388 -13.90544 -13.79865 -13.71614 -13.46117 -13.43891 -13.13902 -12.99131 -12.89962 -12.82130 -12.80460 -12.48667 -12.39675 -12.23814 -12.17704 -12.11346 -12.05957 -11.83805 -11.62903 -10.87777 -10.74452 -10.40295 -9.51408 -9.44884 -8.93382 -8.86314 -7.87605 -5.24206 0.85331 1.40736 1.44782 1.47858 1.51356 1.73963 2.06846 2.36175 2.45676 2.79937 3.29591 3.44106 3.68254 3.72080 3.76927 3.79443 3.86342 3.95914 4.04528 4.10201 4.15737 4.17314 4.31569 4.37704 4.39549 4.49954 4.51268 4.56653 4.59115 4.64544 4.74259 4.76320 4.81040 4.86861 4.89503 4.94657 5.02117 5.03219 5.08136 5.14802 5.25612 5.29548 5.38299 5.47364 5.63189 5.70674 5.86923 6.15194 6.16687 6.32561 6.41553 6.50027 7.06558 7.26434 7.72649 8.35597 9.21575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.004165 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.656353 B = 6720.662259 C = 8000.728109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.433 5.433 4 C 0.020 3.980 5 C -0.079 4.079 6 C -0.183 4.183 7 C -0.259 4.259 8 C 0.581 3.419 9 O -0.575 6.575 10 N -0.587 5.587 11 C 0.084 3.916 12 C 0.053 3.947 13 O -0.372 6.372 14 C 0.084 3.916 15 H 0.129 0.871 16 C 0.167 3.833 17 N -0.618 5.618 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.059 4.059 21 N -0.948 5.948 22 Si 0.978 3.022 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.119 3.881 27 C 0.121 3.879 28 H 0.088 0.912 29 C 0.084 3.916 30 C -0.091 4.091 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.146 0.854 44 H 0.024 0.976 45 H 0.016 0.984 46 H 0.248 0.752 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -16.066 18.005 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.110 5.110 4 C -0.089 4.089 5 C -0.136 4.136 6 C -0.206 4.206 7 C -0.269 4.269 8 C 0.373 3.627 9 O -0.457 6.457 10 N -0.319 5.319 11 C -0.038 4.038 12 C -0.023 4.023 13 O -0.289 6.289 14 C 0.025 3.975 15 H 0.146 0.854 16 C 0.041 3.959 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.252 4.252 21 N -0.596 5.596 22 Si 0.806 3.194 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.007 4.007 27 C 0.016 3.984 28 H 0.106 0.894 29 C -0.033 4.033 30 C -0.149 4.149 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.178 0.822 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.164 0.836 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.758 -16.238 17.572 24.609 hybrid contribution -0.895 0.075 -1.541 1.784 sum 4.863 -16.164 16.031 23.279 Atomic orbital electron populations 1.22144 0.93828 1.04169 1.02261 1.22190 0.95936 0.78938 1.06159 1.43843 1.50020 1.12926 1.04183 1.20789 1.06099 0.91904 0.90073 1.20447 1.03295 1.02923 0.86970 1.22037 1.08864 0.98441 0.91238 1.20082 1.17617 0.94278 0.94901 1.18011 0.78034 0.82528 0.84131 1.90642 1.41493 1.84904 1.28657 1.46584 1.59494 1.06649 1.19214 1.22012 0.97807 0.99642 0.84359 1.22544 0.93916 0.86825 0.99063 1.86852 1.77802 1.40181 1.24025 1.22733 0.95468 0.96558 0.82736 0.85392 1.21385 0.93813 0.90700 0.89965 1.44447 1.13432 1.39217 1.37428 1.19306 0.95037 1.14451 1.08528 0.90941 1.25604 0.99246 0.98732 1.01629 1.70169 1.21711 1.27065 1.40689 0.85164 0.78031 0.77408 0.78797 1.20504 1.21420 1.20289 1.21988 0.86299 0.99023 0.93363 1.21553 0.99181 0.88794 0.88845 0.89410 1.20175 1.02180 0.90943 0.90005 1.20437 1.02584 1.02481 0.89357 0.91927 0.88251 0.93968 0.86344 0.88327 0.89749 0.88859 0.90321 0.82176 0.88585 0.88901 0.95719 0.83604 0.95834 0.96557 0.94245 0.92518 0.95961 0.91677 0.91265 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 71.98 0.74 -1.27 16 2 C 0.09 1.08 6.10 86.38 0.53 1.61 16 3 N -0.43 -9.07 2.69 -495.49 -1.33 -10.40 16 4 C 0.02 0.39 6.85 40.98 0.28 0.67 16 5 C -0.08 -0.79 9.81 71.24 0.70 -0.09 16 6 C -0.18 -4.43 8.58 23.62 0.20 -4.23 16 7 C -0.26 -8.46 5.28 -19.04 -0.10 -8.56 16 8 C 0.58 23.06 6.71 86.62 0.58 23.64 16 9 O -0.58 -26.18 12.93 -4.12 -0.05 -26.23 16 10 N -0.59 -22.18 3.08 -809.50 -2.50 -24.68 16 11 C 0.08 2.50 4.98 86.32 0.43 2.93 16 12 C 0.05 1.68 6.72 71.64 0.48 2.16 16 13 O -0.37 -13.79 10.24 -146.20 -1.50 -15.29 16 14 C 0.08 3.49 3.82 30.85 0.12 3.61 16 15 H 0.13 4.75 8.14 -2.38 -0.02 4.73 16 16 C 0.17 8.83 5.02 86.63 0.43 9.26 16 17 N -0.62 -34.81 3.39 -695.62 -2.36 -37.17 16 18 C -0.24 -14.78 10.25 84.03 0.86 -13.92 16 19 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.06 -3.51 5.48 84.86 0.47 -3.04 16 21 N -0.95 -58.75 10.26 21.65 0.22 -58.52 16 22 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 C 0.12 5.86 6.29 86.83 0.55 6.41 16 27 C 0.12 4.99 3.38 45.83 0.16 5.15 16 28 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 29 C 0.08 2.44 6.88 41.78 0.29 2.73 16 30 C -0.09 -2.58 9.86 71.24 0.70 -1.87 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.12 0.81 7.51 -2.38 -0.02 0.79 16 35 H 0.10 1.07 6.87 -2.39 -0.02 1.05 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.57 7.60 -2.39 -0.02 0.55 16 39 H 0.16 3.19 6.47 -2.91 -0.02 3.17 16 40 H 0.10 2.79 5.60 -2.39 -0.01 2.78 16 41 H 0.09 2.16 7.14 -2.38 -0.02 2.14 16 42 H 0.02 0.95 6.81 -2.38 -0.02 0.94 16 43 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.02 1.38 5.74 -2.39 -0.01 1.37 16 45 H 0.02 0.96 7.49 -2.38 -0.02 0.94 16 46 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.06 3.02 5.11 -2.39 -0.01 3.01 16 48 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.07 2.38 6.68 -2.38 -0.02 2.36 16 51 H 0.09 1.93 6.92 -2.39 -0.02 1.92 16 Total: -1.00 -81.03 387.20 2.86 -78.17 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.94 Total: 19.27 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 7.41 Total: 25.16 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -5.96 Total: -130.77 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.55 Total: -41.52 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.03 2.86 -78.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083135004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.473 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds