Wall clock time and date at job start Wed Apr 1 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.53003 * 109.47062 * 240.00190 * 2 1 3 5 5 N 1.46500 * 109.46987 * 120.00449 * 2 1 3 6 6 C 1.35435 * 119.47092 * 240.02159 * 5 2 1 7 7 C 1.35758 * 121.23234 * 179.97438 * 6 5 2 8 8 C 1.39470 * 120.12839 * 0.02562 * 7 6 5 9 9 C 1.39335 * 118.96124 * 359.97438 * 8 7 6 10 10 C 1.47083 * 120.58416 * 180.02562 * 9 8 7 11 11 O 1.21647 * 119.99922 * 354.16899 * 10 9 8 12 12 N 1.34776 * 119.99765 * 174.17689 * 10 9 8 13 13 C 1.46505 * 119.99754 * 185.11802 * 12 10 9 14 14 C 1.53003 * 109.46865 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85029 * 316.19195 * 14 13 12 16 16 C 1.53782 * 113.61628 * 87.50004 * 14 13 12 17 17 C 1.53782 * 87.07905 * 139.98174 * 16 14 13 18 18 H 1.09006 * 113.68958 * 220.01144 * 17 16 14 19 19 N 1.46500 * 113.61859 * 89.11613 * 17 16 14 20 20 C 1.36937 * 120.00134 * 107.49915 * 19 17 16 21 21 H 1.07998 * 119.99621 * 0.02562 * 20 19 17 22 22 C 1.38802 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47186 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47052 * 119.99845 * 24 22 20 27 27 H 1.48502 * 109.47408 * 239.99924 * 24 22 20 28 28 C 1.53781 * 113.61330 * 185.00085 * 14 13 12 29 29 C 1.34656 * 119.47555 * 59.99331 * 5 2 1 30 30 O 1.21884 * 120.09761 * 359.73091 * 29 5 2 31 31 H 1.09001 * 109.47388 * 300.00184 * 1 2 3 32 32 H 1.09003 * 109.47075 * 59.99539 * 1 2 3 33 33 H 1.09003 * 109.47927 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46857 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46991 * 300.00238 * 3 2 1 36 36 H 1.09004 * 109.46568 * 60.00185 * 3 2 1 37 37 H 1.09001 * 109.46552 * 300.00271 * 4 2 1 38 38 H 1.08998 * 109.47179 * 59.99778 * 4 2 1 39 39 H 1.08994 * 109.47322 * 180.02562 * 4 2 1 40 40 H 1.08006 * 119.38467 * 359.97438 * 6 5 2 41 41 H 1.08001 * 119.93042 * 180.02562 * 7 6 5 42 42 H 1.07998 * 120.51486 * 179.97438 * 8 7 6 43 43 H 0.96995 * 120.00329 * 5.11419 * 12 10 9 44 44 H 1.08994 * 109.46760 * 299.99537 * 13 12 10 45 45 H 1.08996 * 109.47082 * 60.00144 * 13 12 10 46 46 H 1.08995 * 113.61086 * 254.52930 * 16 14 13 47 47 H 1.08991 * 113.61215 * 25.43191 * 16 14 13 48 48 H 0.97001 * 119.99781 * 287.50502 * 19 17 16 49 49 H 0.96998 * 119.99960 * 180.02562 * 23 22 20 50 50 H 1.08998 * 113.61056 * 334.56200 * 28 14 13 51 51 H 1.08996 * 113.61670 * 105.38178 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.7958 -0.0222 2.0808 7 6 3.2674 -0.6270 3.2011 8 6 2.9551 -1.9613 3.4605 9 6 2.1556 -2.6555 2.5548 10 6 1.8037 -4.0636 2.7933 11 8 2.2960 -4.6632 3.7302 12 7 0.9360 -4.6895 1.9736 13 6 0.4992 -6.0551 2.2745 14 6 -0.4774 -6.5275 1.1956 15 1 -1.2135 -5.7688 0.9294 16 6 0.2110 -7.1733 -0.0184 17 6 -0.9302 -8.2041 -0.0179 18 1 -0.6012 -9.2217 -0.2290 19 7 -2.0855 -7.8011 -0.8234 20 6 -2.3365 -8.4205 -2.0186 21 1 -1.6829 -9.2064 -2.3672 22 6 -3.4309 -8.0383 -2.7821 23 7 -4.2278 -7.0808 -2.3570 24 14 -3.7729 -8.8827 -4.4129 25 1 -2.7372 -9.9176 -4.6612 26 1 -5.1116 -9.5240 -4.3671 27 1 -3.7422 -7.8785 -5.5064 28 6 -1.0917 -7.9078 1.4824 29 6 1.6864 -1.9799 1.3987 30 8 0.9811 -2.5632 0.5938 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3635 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8901 37 1 1.6765 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7216 -1.2491 40 1 3.0455 1.0115 1.8916 41 1 3.8855 -0.0738 3.8926 42 1 3.3271 -2.4487 4.3495 43 1 0.6008 -4.2358 1.1846 44 1 1.3649 -6.7169 2.2964 45 1 0.0038 -6.0725 3.2453 46 1 0.2238 -6.5365 -0.9029 47 1 1.1867 -7.6020 0.2099 48 1 -2.6727 -7.0954 -0.5101 49 1 -4.9928 -6.8139 -2.8903 50 1 -0.4720 -8.5373 2.1210 51 1 -2.1301 -7.8639 1.8109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086500011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:35 Heat of formation + Delta-G solvation = -0.222984 kcal Electronic energy + Delta-G solvation = -31038.914549 eV Core-core repulsion = 26940.058099 eV Total energy + Delta-G solvation = -4098.856449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18468 -39.50412 -38.35026 -37.52325 -36.75001 -34.31858 -33.03916 -32.49311 -30.61791 -30.00531 -28.42843 -27.72168 -27.16830 -24.92645 -24.74968 -23.87981 -23.42335 -21.68641 -21.16124 -20.20582 -18.45472 -17.93063 -17.45465 -17.43466 -16.96716 -16.25638 -16.09939 -15.50451 -15.11316 -14.83388 -14.72761 -14.53799 -14.29129 -14.21114 -13.95514 -13.59252 -13.18574 -13.08950 -13.01347 -12.78525 -12.64462 -12.50217 -12.45609 -12.40065 -12.08775 -11.91850 -11.77824 -11.62507 -11.56865 -11.24320 -10.95343 -10.80022 -10.37555 -10.34071 -10.11223 -10.05950 -9.92155 -9.63787 -9.60766 -9.32278 -8.82232 -8.69469 -8.30633 -6.91549 -5.73775 -3.02221 0.14405 1.48537 2.08105 2.71330 3.45618 3.51126 3.51283 3.53638 3.64077 3.93978 4.03366 4.28525 4.39590 4.48888 4.58650 4.61738 4.79800 4.84512 4.92476 5.00986 5.20486 5.24731 5.27648 5.29670 5.32107 5.39797 5.43052 5.46520 5.53752 5.56556 5.71395 5.79606 5.83801 5.87172 5.92413 5.98157 6.01231 6.12850 6.14050 6.25750 6.35001 6.50216 6.64254 6.68467 6.81242 6.90102 7.06194 7.18594 7.59277 7.75859 7.99703 8.45529 8.55311 9.55955 10.15008 10.49424 11.48879 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002661 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.667932 B =10520.776471 C =12537.948151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.164 4.164 4 C -0.166 4.166 5 N -0.480 5.480 6 C 0.152 3.848 7 C -0.244 4.244 8 C 0.055 3.945 9 C -0.273 4.273 10 C 0.572 3.428 11 O -0.561 6.561 12 N -0.709 5.709 13 C 0.130 3.870 14 C -0.117 4.117 15 H 0.092 0.908 16 C -0.167 4.167 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.148 4.148 29 C 0.530 3.470 30 O -0.529 6.529 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.170 0.830 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.417 0.583 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.076 0.924 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.109 22.065 10.418 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 C -0.222 4.222 4 C -0.223 4.223 5 N -0.189 5.189 6 C 0.022 3.978 7 C -0.267 4.267 8 C 0.032 3.968 9 C -0.280 4.280 10 C 0.359 3.641 11 O -0.443 6.443 12 N -0.369 5.369 13 C 0.006 3.994 14 C -0.136 4.136 15 H 0.110 0.890 16 C -0.208 4.208 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.345 5.345 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.187 4.187 29 C 0.333 3.667 30 O -0.410 6.410 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.187 0.813 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.863 21.163 10.242 28.933 hybrid contribution -0.426 0.324 -1.012 1.145 sum 16.436 21.487 9.230 28.584 Atomic orbital electron populations 1.22264 0.91895 1.05579 1.02632 1.21105 0.96327 0.92320 0.84068 1.22319 1.01897 0.93805 1.04142 1.22259 1.01113 1.03654 0.95314 1.45747 1.40579 1.12039 1.20491 1.22356 0.88280 0.98647 0.88564 1.20674 1.09706 0.96186 1.00150 1.22015 0.86323 0.92470 0.95994 1.21110 1.10652 0.97056 0.99180 1.17432 0.79301 0.84954 0.82455 1.90754 1.54679 1.66841 1.31981 1.46615 1.45159 1.16311 1.28850 1.21448 0.97383 0.82303 0.98264 1.22672 0.97833 0.97328 0.95760 0.88989 1.23858 0.98723 1.00855 0.97335 1.21065 0.88491 0.95582 0.89346 0.92030 1.42183 1.27611 1.43611 1.21048 1.19343 1.07754 1.14097 0.95727 0.90978 1.24758 0.98000 0.99155 0.99147 1.69682 1.17588 1.31931 1.38891 0.86105 0.77679 0.78581 0.83770 1.20522 1.21896 1.21908 1.23442 1.00542 0.95375 0.99381 1.16983 0.82097 0.80352 0.87305 1.90626 1.39406 1.64026 1.46990 0.92350 0.90552 0.89060 0.91256 0.89633 0.91238 0.89119 0.90548 0.92381 0.81251 0.82978 0.83392 0.73650 0.91766 0.92157 0.91548 0.91515 0.78095 0.93583 0.90511 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 8.39 37.16 0.31 -1.11 16 2 C 0.14 1.04 1.02 -131.82 -0.13 0.91 16 3 C -0.16 -0.57 7.09 37.16 0.26 -0.31 16 4 C -0.17 -1.40 8.39 37.16 0.31 -1.09 16 5 N -0.48 -4.08 2.53 -105.39 -0.27 -4.34 16 6 C 0.15 0.81 9.58 -16.85 -0.16 0.65 16 7 C -0.24 -1.39 9.99 -40.01 -0.40 -1.79 16 8 C 0.06 0.52 9.69 -38.71 -0.38 0.14 16 9 C -0.27 -3.54 5.92 -104.51 -0.62 -4.16 16 10 C 0.57 9.38 7.73 -12.67 -0.10 9.28 16 11 O -0.56 -10.38 16.41 5.24 0.09 -10.30 16 12 N -0.71 -11.83 5.47 -61.49 -0.34 -12.16 16 13 C 0.13 2.13 5.52 -4.04 -0.02 2.11 16 14 C -0.12 -2.07 3.63 -89.81 -0.33 -2.39 16 15 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 16 C -0.17 -3.17 7.43 -25.92 -0.19 -3.36 16 17 C 0.17 3.53 4.56 -67.12 -0.31 3.22 16 18 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 19 N -0.71 -18.36 5.31 -52.64 -0.28 -18.64 16 20 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 21 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C -0.15 -2.62 7.39 -25.92 -0.19 -2.81 16 29 C 0.53 6.62 6.84 -14.92 -0.10 6.51 16 30 O -0.53 -7.97 9.83 5.02 0.05 -7.92 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.09 6.11 -51.93 -0.32 0.77 16 34 H 0.07 0.16 7.41 -51.93 -0.38 -0.22 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.16 7.41 -51.93 -0.38 -0.22 16 37 H 0.09 1.07 6.13 -51.93 -0.32 0.76 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.17 0.26 5.55 -52.48 -0.29 -0.03 16 41 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.15 1.30 7.71 -52.49 -0.40 0.89 16 43 H 0.42 7.15 5.08 -40.82 -0.21 6.94 16 44 H 0.06 1.06 7.84 -51.93 -0.41 0.66 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.07 1.15 7.90 -51.93 -0.41 0.74 16 48 H 0.39 10.60 7.90 -40.82 -0.32 10.28 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 51 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -35.38 404.82 -9.29 -44.67 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -8.06 Total: 14.43 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.29 Total: -1.65 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.16 Total: -63.10 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.14 Total: -18.22 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.38 -9.29 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086500011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.449 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds