Wall clock time and date at job start Wed Apr 1 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.53003 * 109.47062 * 240.00190 * 2 1 3 5 5 N 1.46500 * 109.46987 * 120.00449 * 2 1 3 6 6 C 1.35435 * 119.47092 * 240.02159 * 5 2 1 7 7 C 1.35758 * 121.23234 * 179.97438 * 6 5 2 8 8 C 1.39470 * 120.12839 * 0.02562 * 7 6 5 9 9 C 1.39335 * 118.96124 * 359.97438 * 8 7 6 10 10 C 1.47083 * 120.58416 * 180.02562 * 9 8 7 11 11 O 1.21647 * 119.99922 * 354.16899 * 10 9 8 12 12 N 1.34776 * 119.99765 * 174.17689 * 10 9 8 13 13 C 1.46505 * 119.99754 * 185.11802 * 12 10 9 14 14 C 1.53003 * 109.46865 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85029 * 316.19195 * 14 13 12 16 16 C 1.53782 * 113.61628 * 87.50004 * 14 13 12 17 17 C 1.53782 * 87.07905 * 139.98174 * 16 14 13 18 18 H 1.09006 * 113.68958 * 220.01144 * 17 16 14 19 19 N 1.46500 * 113.61859 * 89.11613 * 17 16 14 20 20 C 1.36937 * 120.00134 * 107.49915 * 19 17 16 21 21 H 1.07998 * 119.99621 * 0.02562 * 20 19 17 22 22 C 1.38802 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47186 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47052 * 119.99845 * 24 22 20 27 27 H 1.48502 * 109.47408 * 239.99924 * 24 22 20 28 28 C 1.53781 * 113.61330 * 185.00085 * 14 13 12 29 29 C 1.34656 * 119.47555 * 59.99331 * 5 2 1 30 30 O 1.21884 * 120.09761 * 359.73091 * 29 5 2 31 31 H 1.09001 * 109.47388 * 300.00184 * 1 2 3 32 32 H 1.09003 * 109.47075 * 59.99539 * 1 2 3 33 33 H 1.09003 * 109.47927 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46857 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46991 * 300.00238 * 3 2 1 36 36 H 1.09004 * 109.46568 * 60.00185 * 3 2 1 37 37 H 1.09001 * 109.46552 * 300.00271 * 4 2 1 38 38 H 1.08998 * 109.47179 * 59.99778 * 4 2 1 39 39 H 1.08994 * 109.47322 * 180.02562 * 4 2 1 40 40 H 1.08006 * 119.38467 * 359.97438 * 6 5 2 41 41 H 1.08001 * 119.93042 * 180.02562 * 7 6 5 42 42 H 1.07998 * 120.51486 * 179.97438 * 8 7 6 43 43 H 0.96995 * 120.00329 * 5.11419 * 12 10 9 44 44 H 1.08994 * 109.46760 * 299.99537 * 13 12 10 45 45 H 1.08996 * 109.47082 * 60.00144 * 13 12 10 46 46 H 1.08995 * 113.61086 * 254.52930 * 16 14 13 47 47 H 1.08991 * 113.61215 * 25.43191 * 16 14 13 48 48 H 0.97001 * 119.99781 * 287.50502 * 19 17 16 49 49 H 0.96998 * 119.99960 * 180.02562 * 23 22 20 50 50 H 1.08998 * 113.61056 * 334.56200 * 28 14 13 51 51 H 1.08996 * 113.61670 * 105.38178 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.7958 -0.0222 2.0808 7 6 3.2674 -0.6270 3.2011 8 6 2.9551 -1.9613 3.4605 9 6 2.1556 -2.6555 2.5548 10 6 1.8037 -4.0636 2.7933 11 8 2.2960 -4.6632 3.7302 12 7 0.9360 -4.6895 1.9736 13 6 0.4992 -6.0551 2.2745 14 6 -0.4774 -6.5275 1.1956 15 1 -1.2135 -5.7688 0.9294 16 6 0.2110 -7.1733 -0.0184 17 6 -0.9302 -8.2041 -0.0179 18 1 -0.6012 -9.2217 -0.2290 19 7 -2.0855 -7.8011 -0.8234 20 6 -2.3365 -8.4205 -2.0186 21 1 -1.6829 -9.2064 -2.3672 22 6 -3.4309 -8.0383 -2.7821 23 7 -4.2278 -7.0808 -2.3570 24 14 -3.7729 -8.8827 -4.4129 25 1 -2.7372 -9.9176 -4.6612 26 1 -5.1116 -9.5240 -4.3671 27 1 -3.7422 -7.8785 -5.5064 28 6 -1.0917 -7.9078 1.4824 29 6 1.6864 -1.9799 1.3987 30 8 0.9811 -2.5632 0.5938 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3635 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8901 37 1 1.6765 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7216 -1.2491 40 1 3.0455 1.0115 1.8916 41 1 3.8855 -0.0738 3.8926 42 1 3.3271 -2.4487 4.3495 43 1 0.6008 -4.2358 1.1846 44 1 1.3649 -6.7169 2.2964 45 1 0.0038 -6.0725 3.2453 46 1 0.2238 -6.5365 -0.9029 47 1 1.1867 -7.6020 0.2099 48 1 -2.6727 -7.0954 -0.5101 49 1 -4.9928 -6.8139 -2.8903 50 1 -0.4720 -8.5373 2.1210 51 1 -2.1301 -7.8639 1.8109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086500011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:34 Heat of formation + Delta-G solvation = -24.176712 kcal Electronic energy + Delta-G solvation = -31039.953260 eV Core-core repulsion = 26940.058099 eV Total energy + Delta-G solvation = -4099.895161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.91837 -40.77278 -39.83729 -38.38593 -37.42899 -35.92345 -34.85885 -33.20663 -32.11763 -31.24083 -29.18664 -28.40265 -28.30681 -26.49137 -25.95207 -25.27300 -24.52964 -23.08168 -22.18195 -21.10357 -19.94387 -19.36518 -18.85146 -18.15286 -18.10904 -17.05595 -16.96275 -16.81184 -16.56088 -16.28008 -15.82107 -15.72391 -15.38673 -15.22978 -15.03383 -14.86431 -14.70801 -14.58378 -13.85765 -13.78517 -13.60271 -13.34375 -13.19168 -13.10781 -13.08807 -12.97271 -12.93598 -12.80405 -12.67266 -12.61809 -12.19322 -12.17269 -12.14582 -12.06537 -11.61827 -11.53487 -11.19551 -11.07758 -10.95528 -10.82955 -10.72053 -10.00776 -9.07417 -9.03590 -7.97163 -5.26563 -0.56356 0.79817 1.42149 1.45075 1.46514 1.56845 1.72196 2.39107 2.53663 2.71080 3.34600 3.37164 3.64334 3.67568 3.75820 3.76413 3.77211 3.82909 3.88021 3.94905 3.99174 4.12660 4.23487 4.27910 4.37148 4.51895 4.59560 4.60118 4.67851 4.70787 4.71455 4.81397 4.84373 4.86430 4.92134 4.93339 5.01920 5.06751 5.16906 5.22410 5.24996 5.26262 5.27977 5.32170 5.47588 5.52243 5.59222 5.62738 5.98128 6.25875 6.58739 6.91131 7.30069 7.30534 8.06300 8.29695 9.26647 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002661 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.667932 B =10520.776471 C =12537.948151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 C -0.159 4.159 4 C -0.165 4.165 5 N -0.478 5.478 6 C 0.173 3.827 7 C -0.239 4.239 8 C 0.075 3.925 9 C -0.329 4.329 10 C 0.566 3.434 11 O -0.594 6.594 12 N -0.718 5.718 13 C 0.137 3.863 14 C -0.105 4.105 15 H 0.068 0.932 16 C -0.154 4.154 17 C 0.149 3.851 18 H 0.067 0.933 19 N -0.721 5.721 20 C -0.243 4.243 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.291 1.291 27 H -0.293 1.293 28 C -0.129 4.129 29 C 0.521 3.479 30 O -0.571 6.571 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.224 0.776 41 H 0.199 0.801 42 H 0.151 0.849 43 H 0.413 0.587 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.091 0.909 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.110 0.890 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.731 24.868 11.211 33.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 C -0.216 4.216 4 C -0.223 4.223 5 N -0.184 5.184 6 C 0.043 3.957 7 C -0.261 4.261 8 C 0.051 3.949 9 C -0.336 4.336 10 C 0.356 3.644 11 O -0.478 6.478 12 N -0.378 5.378 13 C 0.014 3.986 14 C -0.124 4.124 15 H 0.086 0.914 16 C -0.195 4.195 17 C 0.039 3.961 18 H 0.085 0.915 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.805 3.195 25 H -0.189 1.189 26 H -0.218 1.218 27 H -0.221 1.221 28 C -0.168 4.168 29 C 0.325 3.675 30 O -0.456 6.456 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.216 0.784 42 H 0.169 0.831 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.128 0.872 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.540 23.974 11.053 32.844 hybrid contribution -1.127 -0.410 -1.205 1.700 sum 18.413 23.564 9.848 31.484 Atomic orbital electron populations 1.22231 0.93422 1.02998 1.03695 1.21267 0.95306 0.94579 0.82880 1.22355 1.03259 0.90204 1.05812 1.22224 1.01598 1.01504 0.96955 1.45817 1.40273 1.10938 1.21358 1.23332 0.85119 1.00362 0.86899 1.21189 1.09509 0.94453 1.00924 1.22314 0.83909 0.93946 0.94696 1.20865 1.15091 0.95902 1.01761 1.17994 0.78402 0.86428 0.81603 1.90702 1.55937 1.68028 1.33152 1.46739 1.45642 1.16344 1.29104 1.21314 0.96971 0.82728 0.97619 1.22461 0.97363 0.96924 0.95616 0.91387 1.23719 0.99251 0.99741 0.96789 1.21360 0.87698 0.96051 0.91028 0.91538 1.42340 1.28922 1.43378 1.21208 1.19737 1.07482 1.13744 0.96486 0.90403 1.25627 0.98215 1.00281 1.02907 1.69847 1.18206 1.33751 1.40338 0.85023 0.77589 0.77636 0.79212 1.18915 1.21832 1.22070 1.23334 1.00847 0.95397 0.97247 1.17016 0.81955 0.81696 0.86874 1.90599 1.41443 1.65309 1.48286 0.91466 0.89251 0.93461 0.89049 0.88618 0.89098 0.93488 0.89215 0.91414 0.75974 0.78402 0.83144 0.74099 0.91450 0.91864 0.94362 0.89057 0.79559 0.94005 0.87153 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.39 71.98 0.60 -2.24 16 2 C 0.14 1.82 1.02 3.60 0.00 1.82 16 3 C -0.16 -0.33 7.09 71.98 0.51 0.18 16 4 C -0.17 -2.78 8.39 71.98 0.60 -2.17 16 5 N -0.48 -7.31 2.53 -605.54 -1.53 -8.84 16 6 C 0.17 1.04 9.58 83.56 0.80 1.84 16 7 C -0.24 -1.65 9.99 21.99 0.22 -1.43 16 8 C 0.08 1.29 9.69 22.83 0.22 1.51 16 9 C -0.33 -8.83 5.92 -19.79 -0.12 -8.95 16 10 C 0.57 19.68 7.73 86.56 0.67 20.35 16 11 O -0.59 -22.87 16.41 -4.18 -0.07 -22.94 16 12 N -0.72 -25.78 5.47 -466.69 -2.55 -28.33 16 13 C 0.14 4.70 5.52 86.38 0.48 5.17 16 14 C -0.10 -3.86 3.63 -10.27 -0.04 -3.90 16 15 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 16 C -0.15 -6.05 7.43 31.12 0.23 -5.82 16 17 C 0.15 6.38 4.56 45.52 0.21 6.59 16 18 H 0.07 2.78 8.10 -2.38 -0.02 2.76 16 19 N -0.72 -38.91 5.31 -320.44 -1.70 -40.61 16 20 C -0.24 -14.16 9.97 84.03 0.84 -13.32 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 23 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 24 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 25 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 28 C -0.13 -4.59 7.39 31.12 0.23 -4.36 16 29 C 0.52 13.56 6.84 85.16 0.58 14.14 16 30 O -0.57 -19.13 9.83 -4.94 -0.05 -19.18 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.26 6.11 -2.39 -0.01 1.24 16 34 H 0.09 -0.15 7.41 -2.39 -0.02 -0.16 16 35 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.09 -0.13 7.41 -2.38 -0.02 -0.15 16 37 H 0.05 1.23 6.13 -2.39 -0.01 1.22 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.22 -0.99 5.55 -2.91 -0.02 -1.01 16 41 H 0.20 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.15 2.45 7.71 -2.91 -0.02 2.43 16 43 H 0.41 15.68 5.08 -92.77 -0.47 15.20 16 44 H 0.07 2.25 7.84 -2.39 -0.02 2.24 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.09 3.13 7.90 -2.39 -0.02 3.11 16 48 H 0.37 21.64 7.90 -92.71 -0.73 20.91 16 49 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.11 3.22 8.10 -2.39 -0.02 3.20 16 51 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -84.80 404.82 2.66 -82.13 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.25 Total: 44.29 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.51 Total: 5.18 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -5.50 Total: -139.31 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.12 Total: -42.12 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -84.80 2.66 -82.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086500011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.955 kcal (2) G-P(sol) polarization free energy of solvation -84.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds