Wall clock time and date at job start Wed Apr 1 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47057 * 2 1 4 4 O 1.42899 * 109.47018 * 239.99727 * 2 1 3 5 5 C 1.35910 * 116.99828 * 83.36218 * 4 2 1 6 6 C 1.39137 * 120.47245 * 3.63519 * 5 4 2 7 7 C 1.38539 * 118.37078 * 179.71278 * 6 5 4 8 8 C 1.38257 * 119.22339 * 0.57376 * 7 6 5 9 9 N 1.31846 * 120.88307 * 359.67993 * 8 7 6 10 10 C 1.31842 * 121.77983 * 0.02723 * 9 8 7 11 11 C 1.50699 * 109.46966 * 120.00143 * 2 1 3 12 12 O 1.21277 * 120.00380 * 111.02218 * 11 2 1 13 13 N 1.34779 * 119.99820 * 291.02248 * 11 2 1 14 14 C 1.46959 * 120.36451 * 176.42753 * 13 11 2 15 15 C 1.52340 * 109.09248 * 291.65321 * 14 13 11 16 16 C 1.53799 * 109.16220 * 287.30859 * 15 14 13 17 17 C 1.52454 * 109.40695 * 77.83772 * 16 15 14 18 18 C 1.53952 * 110.72539 * 246.26405 * 17 16 15 19 19 C 1.52882 * 109.72859 * 44.36705 * 18 17 16 20 20 H 1.09002 * 109.48108 * 312.89762 * 19 18 17 21 21 N 1.46496 * 109.48683 * 192.85854 * 19 18 17 22 22 C 1.36934 * 119.99712 * 154.72550 * 21 19 18 23 23 H 1.08001 * 120.00531 * 359.97438 * 22 21 19 24 24 C 1.38815 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99797 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00353 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47104 * 59.99665 * 26 24 22 28 28 H 1.48499 * 109.47427 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46669 * 299.99970 * 26 24 22 30 30 C 1.45329 * 120.36365 * 356.43742 * 13 11 2 31 31 H 1.08994 * 109.47213 * 65.36461 * 1 2 3 32 32 H 1.08999 * 109.47045 * 185.36422 * 1 2 3 33 33 H 1.09005 * 109.47304 * 305.36299 * 1 2 3 34 34 H 1.07998 * 120.81558 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.39018 * 180.26128 * 7 6 5 36 36 H 1.07999 * 119.55824 * 179.70863 * 8 7 6 37 37 H 1.08000 * 119.65367 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.53412 * 171.77104 * 14 13 11 39 39 H 1.09000 * 109.53724 * 51.53795 * 14 13 11 40 40 H 1.09002 * 109.52377 * 167.40706 * 15 14 13 41 41 H 1.09001 * 109.57555 * 47.24986 * 15 14 13 42 42 H 1.09001 * 109.48213 * 317.86632 * 16 15 14 43 43 H 1.08996 * 109.48278 * 197.82092 * 16 15 14 44 44 H 1.08999 * 109.22198 * 125.94527 * 17 16 15 45 45 H 1.08999 * 109.19462 * 6.56855 * 17 16 15 46 46 H 1.08994 * 109.43451 * 284.28330 * 18 17 16 47 47 H 1.09001 * 109.42880 * 164.44148 * 18 17 16 48 48 H 0.96994 * 120.00047 * 334.99747 * 21 19 18 49 49 H 0.97002 * 120.00405 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.67446 * 16.90910 * 30 13 11 51 51 H 1.09004 * 109.68155 * 256.36600 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0800 0.0538 -2.3124 6 6 1.7748 1.4113 -2.3071 7 6 1.8703 2.1121 -3.4983 8 6 2.2509 1.4428 -4.6466 9 7 2.5282 0.1541 -4.6184 10 6 2.4552 -0.5476 -3.5046 11 6 2.0323 -0.7104 1.2304 12 8 2.5897 -1.7825 1.1267 13 7 1.8622 -0.1543 2.4463 14 6 2.2781 -0.8750 3.6576 15 6 1.3716 -2.0834 3.8546 16 6 -0.0139 -1.6046 4.3200 17 6 -0.7913 -1.0650 3.1247 18 6 -1.0278 0.4496 3.2673 19 6 0.2592 1.1313 3.7323 20 1 0.6843 0.5745 4.5674 21 7 -0.0398 2.5004 4.1593 22 6 0.7727 3.1277 5.0657 23 1 1.6337 2.6130 5.4660 24 6 0.4892 4.4248 5.4708 25 7 -0.5603 5.0518 4.9833 26 14 1.5971 5.2803 6.7077 27 1 2.9747 5.3685 6.1604 28 1 1.0813 6.6477 6.9715 29 1 1.6162 4.5051 7.9741 30 6 1.2651 1.1645 2.5739 31 1 -0.3633 0.4283 -0.9341 32 1 -0.3633 -1.0232 0.0961 33 1 -0.3634 0.5948 0.8381 34 1 1.4751 1.9074 -1.3958 35 1 1.6451 3.1679 -3.5306 36 1 2.3225 1.9828 -5.5791 37 1 2.6904 -1.6015 -3.5207 38 1 2.1973 -0.2142 4.5208 39 1 3.3102 -1.2078 3.5475 40 1 1.8016 -2.7423 4.6090 41 1 1.2730 -2.6233 2.9128 42 1 0.1047 -0.8155 5.0626 43 1 -0.5581 -2.4399 4.7606 44 1 -1.7530 -1.5742 3.0627 45 1 -0.2249 -1.2556 2.2132 46 1 -1.8163 0.6262 3.9987 47 1 -1.3288 0.8618 2.3042 48 1 -0.8154 2.9611 3.8031 49 1 -0.7588 5.9581 5.2666 50 1 0.7509 1.4256 1.6489 51 1 2.0416 1.9003 2.7831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088378612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:44 Heat of formation + Delta-G solvation = -6.379036 kcal Electronic energy + Delta-G solvation = -32413.376955 eV Core-core repulsion = 28314.253559 eV Total energy + Delta-G solvation = -4099.123396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22593 -40.34877 -38.52769 -37.41685 -34.71235 -34.27136 -32.94403 -32.42437 -31.89501 -30.38547 -29.74851 -27.30707 -26.33211 -25.15832 -24.16987 -23.68832 -23.04022 -22.10136 -21.56386 -19.73851 -18.87892 -18.61591 -17.43768 -17.15885 -16.93200 -16.41472 -15.88091 -15.83818 -15.72634 -15.07311 -14.55959 -14.39307 -14.32204 -14.07077 -13.85739 -13.72126 -13.52896 -13.38007 -13.16038 -12.95717 -12.80202 -12.59451 -12.33223 -12.23016 -11.83438 -11.74966 -11.50027 -11.38218 -11.16577 -10.93603 -10.88543 -10.77911 -10.52267 -10.35772 -10.29121 -10.03113 -9.88622 -9.81262 -9.80864 -9.60769 -9.05328 -8.62792 -8.36992 -7.15285 -5.92865 -3.23540 0.91539 1.01758 2.41643 2.57953 3.33376 3.38106 3.39759 3.41909 3.58479 4.24881 4.32184 4.39679 4.46914 4.54021 4.64790 4.70936 4.86685 4.88001 4.95352 5.02780 5.05666 5.26779 5.28660 5.34460 5.37928 5.38377 5.51263 5.52947 5.59949 5.69873 5.74327 5.80108 5.82045 5.84393 5.85757 5.93422 6.02856 6.11338 6.17507 6.18374 6.20258 6.29706 6.44516 6.51171 6.59435 6.68858 6.85087 6.98677 7.50645 7.55029 7.73813 8.18566 8.25173 9.36782 9.90820 10.25400 11.28860 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003360 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.001547 B = 8330.900221 C = 9987.204111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.097 0.903 4 O -0.278 6.278 5 C 0.086 3.914 6 C -0.170 4.170 7 C -0.127 4.127 8 C 0.052 3.948 9 N -0.448 5.448 10 C 0.073 3.927 11 C 0.520 3.480 12 O -0.527 6.527 13 N -0.590 5.590 14 C 0.117 3.883 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.127 4.127 19 C 0.157 3.843 20 H 0.071 0.929 21 N -0.718 5.718 22 C -0.248 4.248 23 H 0.070 0.930 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 C 0.067 3.933 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.257 0.743 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -9.501 -11.645 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.005 3.995 3 H 0.114 0.886 4 O -0.189 6.189 5 C 0.038 3.962 6 C -0.196 4.196 7 C -0.147 4.147 8 C -0.105 4.105 9 N -0.157 5.157 10 C -0.086 4.086 11 C 0.305 3.695 12 O -0.403 6.403 13 N -0.324 5.324 14 C -0.004 4.004 15 C -0.174 4.174 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.165 4.165 19 C 0.046 3.954 20 H 0.088 0.912 21 N -0.359 5.359 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 C -0.058 4.058 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.997 -10.598 -12.269 16.335 hybrid contribution -0.051 1.640 1.407 2.162 sum 1.947 -8.958 -10.862 14.213 Atomic orbital electron populations 1.22652 0.92350 1.04792 1.04638 1.22291 0.96054 0.97192 0.84013 0.88568 1.86227 1.80227 1.37492 1.14962 1.20268 0.96843 0.91050 0.88075 1.21837 1.03954 0.93481 1.00332 1.22036 0.98556 1.01446 0.92671 1.22668 0.98720 0.90553 0.98531 1.67733 1.12233 1.08325 1.27402 1.22216 1.00294 1.00856 0.85194 1.19814 0.79854 0.85924 0.83860 1.90698 1.41916 1.21583 1.86110 1.47771 1.60638 1.19018 1.04969 1.21553 0.98073 0.93865 0.86939 1.22041 0.95774 0.97509 1.02127 1.21839 0.95342 1.00742 0.98523 1.21761 0.99535 0.95718 0.98743 1.22103 0.98883 0.94335 1.01155 1.20915 0.92318 0.87946 0.94207 0.91162 1.42396 1.31968 1.10652 1.50880 1.19148 1.05947 0.95992 1.16839 0.91189 1.24743 0.98052 0.97179 1.00360 1.69638 1.28016 1.13111 1.46835 0.86305 0.79947 0.78858 0.81272 1.21181 1.21633 1.21145 1.23043 0.98304 0.82263 1.02211 0.90890 0.90531 0.88375 0.83953 0.84304 0.82526 0.81895 0.88816 0.91311 0.91282 0.90834 0.90347 0.92524 0.92858 0.91990 0.91315 0.92447 0.78102 0.93281 0.90668 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 7.87 37.16 0.29 -1.75 16 2 C 0.06 0.81 1.82 -27.88 -0.05 0.76 16 3 H 0.10 1.11 5.36 -51.93 -0.28 0.83 16 4 O -0.28 -3.83 9.37 -39.20 -0.37 -4.20 16 5 C 0.09 1.05 6.52 -39.08 -0.25 0.79 16 6 C -0.17 -1.79 8.48 -39.14 -0.33 -2.12 16 7 C -0.13 -1.16 10.11 -39.46 -0.40 -1.56 16 8 C 0.05 0.50 11.18 -17.54 -0.20 0.31 16 9 N -0.45 -5.31 10.36 -13.13 -0.14 -5.44 16 10 C 0.07 0.87 11.14 -17.38 -0.19 0.68 16 11 C 0.52 7.73 5.56 -10.98 -0.06 7.67 16 12 O -0.53 -9.43 15.41 -14.19 -0.22 -9.65 16 13 N -0.59 -8.23 1.68 -174.36 -0.29 -8.52 16 14 C 0.12 1.57 5.18 -4.13 -0.02 1.55 16 15 C -0.14 -1.68 5.55 -26.65 -0.15 -1.83 16 16 C -0.13 -1.56 5.49 -26.59 -0.15 -1.71 16 17 C -0.12 -1.49 5.35 -26.51 -0.14 -1.63 16 18 C -0.13 -1.79 4.83 -26.30 -0.13 -1.92 16 19 C 0.16 2.58 2.29 -67.76 -0.16 2.43 16 20 H 0.07 1.19 3.29 -51.93 -0.17 1.02 16 21 N -0.72 -15.56 5.12 -53.26 -0.27 -15.84 16 22 C -0.25 -6.15 9.89 -15.06 -0.15 -6.30 16 23 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 26 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.07 1.00 5.08 -4.44 -0.02 0.97 16 31 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 32 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 33 H 0.10 1.07 3.09 -51.93 -0.16 0.91 16 34 H 0.14 1.34 5.92 -52.49 -0.31 1.03 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.26 6.07 -51.93 -0.32 0.94 16 39 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 42 H 0.08 1.06 5.47 -51.93 -0.28 0.77 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.79 3.53 -51.93 -0.18 0.61 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.76 6.03 -51.93 -0.31 0.45 16 48 H 0.39 9.01 7.80 -40.82 -0.32 8.69 16 49 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.08 1.00 3.93 -51.93 -0.20 0.80 16 51 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -30.12 378.54 -9.07 -39.19 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.99 Total: 12.00 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.20 Total: -3.93 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.02 Total: -55.01 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.59 Total: -13.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.12 -9.07 -39.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088378612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.810 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds