Wall clock time and date at job start Wed Apr 1 2020 04:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47057 * 2 1 4 4 O 1.42899 * 109.47018 * 239.99727 * 2 1 3 5 5 C 1.35910 * 116.99828 * 83.36218 * 4 2 1 6 6 C 1.39137 * 120.47245 * 3.63519 * 5 4 2 7 7 C 1.38539 * 118.37078 * 179.71278 * 6 5 4 8 8 C 1.38257 * 119.22339 * 0.57376 * 7 6 5 9 9 N 1.31846 * 120.88307 * 359.67993 * 8 7 6 10 10 C 1.31842 * 121.77983 * 0.02723 * 9 8 7 11 11 C 1.50699 * 109.46966 * 120.00143 * 2 1 3 12 12 O 1.21277 * 120.00380 * 111.02218 * 11 2 1 13 13 N 1.34779 * 119.99820 * 291.02248 * 11 2 1 14 14 C 1.46959 * 120.36451 * 176.42753 * 13 11 2 15 15 C 1.52340 * 109.09248 * 291.65321 * 14 13 11 16 16 C 1.53799 * 109.16220 * 287.30859 * 15 14 13 17 17 C 1.52454 * 109.40695 * 77.83772 * 16 15 14 18 18 C 1.53952 * 110.72539 * 246.26405 * 17 16 15 19 19 C 1.52882 * 109.72859 * 44.36705 * 18 17 16 20 20 H 1.09002 * 109.48108 * 312.89762 * 19 18 17 21 21 N 1.46496 * 109.48683 * 192.85854 * 19 18 17 22 22 C 1.36934 * 119.99712 * 154.72550 * 21 19 18 23 23 H 1.08001 * 120.00531 * 359.97438 * 22 21 19 24 24 C 1.38815 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99797 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00353 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47104 * 59.99665 * 26 24 22 28 28 H 1.48499 * 109.47427 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46669 * 299.99970 * 26 24 22 30 30 C 1.45329 * 120.36365 * 356.43742 * 13 11 2 31 31 H 1.08994 * 109.47213 * 65.36461 * 1 2 3 32 32 H 1.08999 * 109.47045 * 185.36422 * 1 2 3 33 33 H 1.09005 * 109.47304 * 305.36299 * 1 2 3 34 34 H 1.07998 * 120.81558 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.39018 * 180.26128 * 7 6 5 36 36 H 1.07999 * 119.55824 * 179.70863 * 8 7 6 37 37 H 1.08000 * 119.65367 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.53412 * 171.77104 * 14 13 11 39 39 H 1.09000 * 109.53724 * 51.53795 * 14 13 11 40 40 H 1.09002 * 109.52377 * 167.40706 * 15 14 13 41 41 H 1.09001 * 109.57555 * 47.24986 * 15 14 13 42 42 H 1.09001 * 109.48213 * 317.86632 * 16 15 14 43 43 H 1.08996 * 109.48278 * 197.82092 * 16 15 14 44 44 H 1.08999 * 109.22198 * 125.94527 * 17 16 15 45 45 H 1.08999 * 109.19462 * 6.56855 * 17 16 15 46 46 H 1.08994 * 109.43451 * 284.28330 * 18 17 16 47 47 H 1.09001 * 109.42880 * 164.44148 * 18 17 16 48 48 H 0.96994 * 120.00047 * 334.99747 * 21 19 18 49 49 H 0.97002 * 120.00405 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.67446 * 16.90910 * 30 13 11 51 51 H 1.09004 * 109.68155 * 256.36600 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0800 0.0538 -2.3124 6 6 1.7748 1.4113 -2.3071 7 6 1.8703 2.1121 -3.4983 8 6 2.2509 1.4428 -4.6466 9 7 2.5282 0.1541 -4.6184 10 6 2.4552 -0.5476 -3.5046 11 6 2.0323 -0.7104 1.2304 12 8 2.5897 -1.7825 1.1267 13 7 1.8622 -0.1543 2.4463 14 6 2.2781 -0.8750 3.6576 15 6 1.3716 -2.0834 3.8546 16 6 -0.0139 -1.6046 4.3200 17 6 -0.7913 -1.0650 3.1247 18 6 -1.0278 0.4496 3.2673 19 6 0.2592 1.1313 3.7323 20 1 0.6843 0.5745 4.5674 21 7 -0.0398 2.5004 4.1593 22 6 0.7727 3.1277 5.0657 23 1 1.6337 2.6130 5.4660 24 6 0.4892 4.4248 5.4708 25 7 -0.5603 5.0518 4.9833 26 14 1.5971 5.2803 6.7077 27 1 2.9747 5.3685 6.1604 28 1 1.0813 6.6477 6.9715 29 1 1.6162 4.5051 7.9741 30 6 1.2651 1.1645 2.5739 31 1 -0.3633 0.4283 -0.9341 32 1 -0.3633 -1.0232 0.0961 33 1 -0.3634 0.5948 0.8381 34 1 1.4751 1.9074 -1.3958 35 1 1.6451 3.1679 -3.5306 36 1 2.3225 1.9828 -5.5791 37 1 2.6904 -1.6015 -3.5207 38 1 2.1973 -0.2142 4.5208 39 1 3.3102 -1.2078 3.5475 40 1 1.8016 -2.7423 4.6090 41 1 1.2730 -2.6233 2.9128 42 1 0.1047 -0.8155 5.0626 43 1 -0.5581 -2.4399 4.7606 44 1 -1.7530 -1.5742 3.0627 45 1 -0.2249 -1.2556 2.2132 46 1 -1.8163 0.6262 3.9987 47 1 -1.3288 0.8618 2.3042 48 1 -0.8154 2.9611 3.8031 49 1 -0.7588 5.9581 5.2666 50 1 0.7509 1.4256 1.6489 51 1 2.0416 1.9003 2.7831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088378612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:43 Heat of formation + Delta-G solvation = -22.937066 kcal Electronic energy + Delta-G solvation = -32414.094965 eV Core-core repulsion = 28314.253559 eV Total energy + Delta-G solvation = -4099.841406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25269 -41.33788 -39.52039 -38.62200 -36.23163 -35.41462 -34.23382 -33.31071 -33.14243 -31.54234 -30.89834 -28.64826 -27.47538 -26.32072 -25.44966 -24.70755 -24.13629 -23.09876 -22.78861 -20.94175 -19.94571 -19.57150 -19.16883 -18.34501 -17.77123 -17.46411 -17.01425 -16.93558 -16.77740 -16.48344 -15.85571 -15.47106 -15.36616 -15.15740 -15.03622 -14.87251 -14.76842 -14.49689 -14.25018 -14.07288 -13.95561 -13.70955 -13.43949 -13.20219 -13.06181 -12.85693 -12.80537 -12.73746 -12.47846 -12.32678 -12.23552 -12.11483 -11.92455 -11.73622 -11.48531 -11.42579 -11.14990 -11.01974 -10.79531 -10.64883 -10.59374 -9.61704 -9.48560 -8.95922 -7.91221 -5.19040 0.12540 0.20399 1.38450 1.42008 1.51432 1.51970 1.57374 2.34150 2.59203 2.77818 3.21009 3.42109 3.48870 3.55491 3.71489 3.73409 3.76340 3.81533 3.89223 4.03508 4.09803 4.12223 4.19221 4.22913 4.27190 4.37750 4.46652 4.49372 4.55386 4.58164 4.67133 4.73835 4.76992 4.86229 4.93918 4.98047 5.01563 5.04000 5.09158 5.13443 5.21471 5.32502 5.36832 5.40018 5.43631 5.52496 5.57820 5.68148 6.09437 6.30321 6.33954 6.93688 7.01266 7.38777 8.12494 8.35559 9.31193 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003360 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.001547 B = 8330.900221 C = 9987.204111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.066 3.934 3 H 0.108 0.892 4 O -0.298 6.298 5 C 0.068 3.932 6 C -0.173 4.173 7 C -0.122 4.122 8 C 0.051 3.949 9 N -0.469 5.469 10 C 0.058 3.942 11 C 0.519 3.481 12 O -0.559 6.559 13 N -0.584 5.584 14 C 0.112 3.888 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.114 4.114 18 C -0.119 4.119 19 C 0.156 3.844 20 H 0.069 0.931 21 N -0.728 5.728 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.066 4.066 25 N -0.964 5.964 26 Si 0.960 3.040 27 H -0.280 1.280 28 H -0.300 1.300 29 H -0.281 1.281 30 C 0.080 3.920 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.376 0.624 49 H 0.250 0.750 50 H 0.093 0.907 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -9.554 -12.373 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 H 0.126 0.874 4 O -0.210 6.210 5 C 0.020 3.980 6 C -0.199 4.199 7 C -0.141 4.141 8 C -0.106 4.106 9 N -0.178 5.178 10 C -0.100 4.100 11 C 0.306 3.694 12 O -0.438 6.438 13 N -0.317 5.317 14 C -0.009 4.009 15 C -0.166 4.166 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.157 4.157 19 C 0.047 3.953 20 H 0.087 0.913 21 N -0.367 5.367 22 C -0.367 4.367 23 H 0.094 0.906 24 C -0.259 4.259 25 N -0.614 5.614 26 Si 0.790 3.210 27 H -0.207 1.207 28 H -0.227 1.227 29 H -0.207 1.207 30 C -0.045 4.045 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.203 0.797 37 H 0.182 0.818 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.208 0.792 49 H 0.059 0.941 50 H 0.111 0.889 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.957 -10.703 -12.998 16.951 hybrid contribution 0.009 1.592 1.560 2.229 sum 1.966 -9.111 -11.439 14.755 Atomic orbital electron populations 1.22591 0.90916 1.04709 1.05368 1.22311 0.97016 0.97131 0.82933 0.87440 1.86190 1.80857 1.38389 1.15556 1.20372 0.98209 0.91855 0.87568 1.22060 1.03545 0.92876 1.01439 1.22392 0.97180 1.02809 0.91745 1.23244 0.97346 0.89997 1.00046 1.67763 1.13108 1.09543 1.27406 1.22310 1.00904 1.01272 0.85472 1.20205 0.79129 0.85524 0.84500 1.90681 1.43449 1.23088 1.86568 1.47713 1.60190 1.18561 1.05218 1.21654 0.98378 0.94274 0.86617 1.21961 0.95743 0.97003 1.01888 1.21812 0.95373 1.00896 0.98102 1.21724 1.00373 0.94381 0.98726 1.22007 0.97042 0.95370 1.01280 1.21076 0.93926 0.85560 0.94716 0.91310 1.42522 1.31279 1.12340 1.50571 1.19491 1.05555 0.95768 1.15907 0.90644 1.25378 0.99560 0.98297 1.02680 1.69770 1.29882 1.13004 1.48747 0.85420 0.78583 0.77357 0.79629 1.20668 1.22686 1.20742 1.22735 0.97313 0.82203 1.02267 0.89400 0.90868 0.88368 0.82900 0.81252 0.79662 0.81786 0.88931 0.91519 0.89628 0.92241 0.91513 0.90983 0.91370 0.92174 0.92475 0.91293 0.79220 0.94148 0.88862 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 7.87 71.98 0.57 -3.00 16 2 C 0.07 1.58 1.82 29.85 0.05 1.64 16 3 H 0.11 2.30 5.36 -2.39 -0.01 2.29 16 4 O -0.30 -8.08 9.37 -73.65 -0.69 -8.77 16 5 C 0.07 1.59 6.52 22.60 0.15 1.74 16 6 C -0.17 -3.30 8.48 22.56 0.19 -3.11 16 7 C -0.12 -1.88 10.11 22.35 0.23 -1.66 16 8 C 0.05 0.86 11.18 84.70 0.95 1.81 16 9 N -0.47 -10.61 10.36 -195.44 -2.02 -12.63 16 10 C 0.06 1.37 11.14 84.80 0.94 2.31 16 11 C 0.52 15.06 5.56 87.66 0.49 15.55 16 12 O -0.56 -19.94 15.41 15.86 0.24 -19.70 16 13 N -0.58 -15.75 1.68 -823.93 -1.39 -17.14 16 14 C 0.11 2.90 5.18 86.07 0.45 3.35 16 15 C -0.13 -2.98 5.55 30.65 0.17 -2.81 16 16 C -0.12 -2.83 5.49 30.68 0.17 -2.66 16 17 C -0.11 -2.62 5.35 30.73 0.16 -2.46 16 18 C -0.12 -3.18 4.83 30.88 0.15 -3.03 16 19 C 0.16 4.98 2.29 45.11 0.10 5.08 16 20 H 0.07 2.26 3.29 -2.39 -0.01 2.25 16 21 N -0.73 -31.17 5.12 -322.41 -1.65 -32.82 16 22 C -0.24 -11.55 9.89 84.03 0.83 -10.71 16 23 H 0.08 3.56 7.83 -2.91 -0.02 3.53 16 24 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 25 N -0.96 -54.35 13.06 21.65 0.28 -54.07 16 26 Si 0.96 43.04 29.55 68.60 2.03 45.06 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 30 C 0.08 2.29 5.08 86.75 0.44 2.73 16 31 H 0.09 1.50 7.43 -2.39 -0.02 1.49 16 32 H 0.07 1.53 7.56 -2.39 -0.02 1.51 16 33 H 0.10 1.93 3.09 -2.38 -0.01 1.92 16 34 H 0.15 2.51 5.92 -2.91 -0.02 2.49 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.09 2.41 6.07 -2.38 -0.01 2.40 16 39 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.60 6.32 -2.39 -0.02 1.59 16 42 H 0.07 1.70 5.47 -2.39 -0.01 1.69 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.43 3.53 -2.39 -0.01 1.42 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 1.69 6.03 -2.39 -0.01 1.67 16 48 H 0.38 17.52 7.80 -92.71 -0.72 16.80 16 49 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 50 H 0.09 2.33 3.93 -2.39 -0.01 2.32 16 51 H 0.06 1.87 8.10 -2.38 -0.02 1.85 16 Total: -1.00 -64.83 378.54 3.57 -61.26 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.26 Total: 37.05 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.50 Total: 1.75 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -4.78 Total: -116.66 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.45 Total: -28.47 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.83 3.57 -61.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088378612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.322 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds