Wall clock time and date at job start Wed Apr 1 2020 04:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 O 1.42894 * 109.47322 * 120.00249 * 2 1 3 5 5 C 1.35911 * 117.00328 * 275.85561 * 4 2 1 6 6 C 1.39146 * 120.47294 * 3.32515 * 5 4 2 7 7 C 1.38529 * 118.37699 * 179.75978 * 6 5 4 8 8 C 1.38259 * 119.21879 * 0.49440 * 7 6 5 9 9 N 1.31842 * 120.89039 * 359.76615 * 8 7 6 10 10 C 1.31842 * 121.77639 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46959 * 240.00408 * 2 1 3 12 12 O 1.21281 * 119.99930 * 258.79351 * 11 2 1 13 13 N 1.34865 * 120.00220 * 78.80090 * 11 2 1 14 14 C 1.45775 * 120.49300 * 355.01395 * 13 11 2 15 15 C 1.52316 * 114.04639 * 74.04889 * 14 13 11 16 16 C 1.52405 * 112.53826 * 23.43971 * 15 14 13 17 17 C 1.52452 * 111.42188 * 78.84746 * 16 15 14 18 18 C 1.51501 * 112.47227 * 302.25880 * 17 16 15 19 19 C 1.52615 * 112.52073 * 296.08361 * 18 17 16 20 20 H 1.10800 * 107.75586 * 225.63554 * 19 18 17 21 21 N 1.45674 * 112.57377 * 344.00238 * 19 18 17 22 22 C 1.36942 * 120.00078 * 209.11501 * 21 19 18 23 23 H 1.08001 * 119.99672 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99920 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00351 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47275 * 89.99592 * 26 24 22 28 28 H 1.48495 * 109.47183 * 209.99809 * 26 24 22 29 29 H 1.48505 * 109.47149 * 329.99803 * 26 24 22 30 30 C 1.47301 * 120.04385 * 178.81994 * 13 11 2 31 31 H 1.08999 * 109.46940 * 186.52512 * 1 2 3 32 32 H 1.09004 * 109.47108 * 306.52712 * 1 2 3 33 33 H 1.09002 * 109.47186 * 66.52552 * 1 2 3 34 34 H 1.07999 * 120.80755 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.38989 * 180.26471 * 7 6 5 36 36 H 1.07999 * 119.55681 * 179.75032 * 8 7 6 37 37 H 1.08004 * 119.65848 * 180.02562 * 10 9 8 38 38 H 1.09301 * 109.43958 * 197.83219 * 14 13 11 39 39 H 1.10205 * 107.81028 * 313.58620 * 14 13 11 40 40 H 1.09736 * 109.42116 * 145.08440 * 15 14 13 41 41 H 1.09938 * 109.21889 * 262.09754 * 15 14 13 42 42 H 1.08105 * 111.81174 * 313.46542 * 16 15 14 43 43 H 1.10696 * 107.85624 * 196.82147 * 16 15 14 44 44 H 1.09151 * 109.89864 * 178.81050 * 17 16 15 45 45 H 1.10146 * 108.40713 * 62.22753 * 17 16 15 46 46 H 1.10340 * 108.37707 * 176.29790 * 18 17 16 47 47 H 1.08979 * 110.39092 * 59.91391 * 18 17 16 48 48 H 0.96998 * 120.00484 * 29.11985 * 21 19 18 49 49 H 0.97003 * 120.00444 * 180.02562 * 25 24 22 50 50 H 1.09254 * 109.40258 * 15.92877 * 30 13 11 51 51 H 1.09441 * 109.12560 * 134.92448 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0956 0.0580 2.3085 6 6 1.6688 1.3822 2.3333 7 6 1.7750 2.0861 3.5217 8 6 2.3069 1.4582 4.6328 9 7 2.7072 0.2034 4.5743 10 6 2.6186 -0.5027 3.4644 11 6 2.0323 -0.7103 -1.2305 12 8 2.4269 -1.8545 -1.1517 13 7 2.0432 -0.0737 -2.4194 14 6 1.4724 1.2613 -2.5489 15 6 2.3257 2.3634 -1.9346 16 6 3.7955 1.9741 -1.8293 17 6 4.5064 2.1157 -3.1704 18 6 3.8616 1.2819 -4.2586 19 6 3.9456 -0.2153 -3.9750 20 1 4.2663 -0.7186 -4.9086 21 7 4.9255 -0.5354 -2.9458 22 6 5.5658 -1.7458 -2.9627 23 1 5.3445 -2.4629 -3.7394 24 6 6.4992 -2.0510 -1.9817 25 7 6.7693 -1.1769 -1.0355 26 14 7.3731 -3.7018 -2.0052 27 1 8.6189 -3.5912 -2.8059 28 1 7.7116 -4.1026 -0.6160 29 1 6.4836 -4.7242 -2.6125 30 6 2.5581 -0.7582 -3.6178 31 1 -0.3633 -1.0210 0.1168 32 1 -0.3633 0.6117 0.8258 33 1 -0.3634 0.4094 -0.9426 34 1 1.2614 1.8487 1.4485 35 1 1.4496 3.1142 3.5787 36 1 2.3960 2.0031 5.5610 37 1 2.9565 -1.5284 3.4551 38 1 1.2851 1.4761 -3.6041 39 1 0.4917 1.2589 -2.0462 40 1 2.2354 3.2747 -2.5393 41 1 1.9433 2.6005 -0.9315 42 1 3.9197 0.9812 -1.4201 43 1 4.2804 2.6687 -1.1168 44 1 5.5599 1.8514 -3.0621 45 1 4.4701 3.1740 -3.4733 46 1 4.3846 1.4852 -5.2087 47 1 2.8244 1.5834 -4.4037 48 1 5.1246 0.1087 -2.2484 49 1 7.4218 -1.3900 -0.3501 50 1 2.6168 -1.8321 -3.4253 51 1 1.8715 -0.5856 -4.4523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088378613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:48 Heat of formation + Delta-G solvation = -4.850312 kcal Electronic energy + Delta-G solvation = -33487.484523 eV Core-core repulsion = 29388.427418 eV Total energy + Delta-G solvation = -4099.057105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91315 -39.93540 -38.24889 -37.06961 -34.88759 -33.60442 -32.51736 -32.20700 -31.63149 -29.99623 -29.28972 -27.77423 -26.50847 -25.09975 -23.92707 -23.55571 -23.10842 -21.84731 -20.59926 -19.64612 -18.59951 -18.20126 -17.32391 -16.83570 -16.75494 -16.15003 -15.76902 -15.59430 -15.19397 -14.78192 -14.57194 -14.41077 -14.14707 -13.92375 -13.65633 -13.60782 -13.39138 -13.23986 -12.94339 -12.69432 -12.42255 -12.29712 -12.18643 -11.75315 -11.67740 -11.58049 -11.49079 -11.14168 -11.03291 -10.81880 -10.71798 -10.67778 -10.30917 -10.09499 -9.84470 -9.83628 -9.61951 -9.59600 -9.51037 -9.15202 -8.93234 -8.37496 -8.16784 -6.78113 -5.64026 -2.90590 1.11798 1.23886 2.67353 3.13179 3.53209 3.59686 3.61151 3.64300 3.79973 4.41590 4.52919 4.55596 4.70364 4.72246 4.72614 4.82569 4.90339 5.02997 5.06239 5.10311 5.21228 5.27316 5.34360 5.41334 5.51594 5.52410 5.56436 5.71565 5.72507 5.76187 5.78982 5.86144 5.95044 5.98820 6.03272 6.05688 6.16236 6.22560 6.33577 6.38353 6.41352 6.50117 6.60914 6.79823 6.90060 6.91770 7.08242 7.26014 7.80755 7.84198 7.96763 8.55694 8.69565 9.67492 10.25101 10.56998 11.59004 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.004838 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.969052 B = 5786.126499 C = 7340.477215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 H 0.097 0.903 4 O -0.272 6.272 5 C 0.093 3.907 6 C -0.173 4.173 7 C -0.132 4.132 8 C 0.049 3.951 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.521 3.479 12 O -0.486 6.486 13 N -0.591 5.591 14 C 0.103 3.897 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.119 4.119 19 C 0.164 3.836 20 H 0.048 0.952 21 N -0.707 5.707 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.007 4.007 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.293 1.293 28 H -0.293 1.293 29 H -0.283 1.283 30 C 0.092 3.908 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.387 0.613 49 H 0.253 0.747 50 H 0.089 0.911 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.074 12.401 1.285 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.001 3.999 3 H 0.114 0.886 4 O -0.182 6.182 5 C 0.045 3.955 6 C -0.199 4.199 7 C -0.151 4.151 8 C -0.108 4.108 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.305 3.695 12 O -0.357 6.357 13 N -0.326 5.326 14 C -0.021 4.021 15 C -0.173 4.173 16 C -0.160 4.160 17 C -0.142 4.142 18 C -0.157 4.157 19 C 0.051 3.949 20 H 0.066 0.934 21 N -0.350 5.350 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.203 4.203 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.221 1.221 28 H -0.219 1.219 29 H -0.208 1.208 30 C -0.033 4.033 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.225 0.775 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.346 10.990 2.008 18.982 hybrid contribution 0.129 0.165 -0.561 0.599 sum -15.216 11.155 1.448 18.923 Atomic orbital electron populations 1.22409 0.93285 1.04442 1.03406 1.22464 0.95204 0.97570 0.84641 0.88562 1.86302 1.80177 1.36653 1.15068 1.20287 0.95759 0.91152 0.88348 1.21732 1.04260 0.94013 0.99893 1.21938 0.99321 1.00891 0.92990 1.22620 0.98112 0.91342 0.98714 1.67735 1.13981 1.07682 1.26144 1.22282 0.98688 1.01166 0.85969 1.19619 0.79367 0.86969 0.83511 1.90800 1.43593 1.17093 1.84236 1.47467 1.61751 1.14920 1.08476 1.21549 0.95235 0.83039 1.02309 1.21955 0.96730 0.98139 1.00439 1.21438 0.93155 1.03681 0.97702 1.21034 1.00910 0.97918 0.94292 1.21658 0.99937 0.96186 0.97905 1.20497 0.88832 0.92278 0.93308 0.93400 1.42360 1.44251 1.18160 1.30210 1.19151 1.15553 0.93119 1.08568 0.91522 1.24629 1.00238 0.97849 0.97545 1.69630 1.37270 1.34804 1.16212 0.86240 0.79393 0.84194 0.76654 1.22076 1.21896 1.20834 1.22944 0.96871 0.99203 0.84255 0.90468 0.91143 0.89967 0.84440 0.84688 0.82733 0.81729 0.89750 0.92329 0.91046 0.92860 0.89406 0.93445 0.90837 0.93920 0.93323 0.92462 0.77510 0.93757 0.89300 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.02 37.16 0.34 -1.61 16 2 C 0.06 0.92 1.92 -27.88 -0.05 0.87 16 3 H 0.10 1.29 3.31 -51.93 -0.17 1.12 16 4 O -0.27 -4.86 9.42 -38.63 -0.36 -5.23 16 5 C 0.09 1.44 6.61 -39.07 -0.26 1.18 16 6 C -0.17 -2.10 8.39 -39.14 -0.33 -2.43 16 7 C -0.13 -1.38 10.11 -39.47 -0.40 -1.78 16 8 C 0.05 0.58 11.18 -17.54 -0.20 0.38 16 9 N -0.45 -6.63 10.36 -13.12 -0.14 -6.76 16 10 C 0.08 1.23 11.14 -17.37 -0.19 1.03 16 11 C 0.52 9.76 5.80 -10.94 -0.06 9.70 16 12 O -0.49 -11.89 16.01 -13.61 -0.22 -12.11 16 13 N -0.59 -9.24 1.71 -172.91 -0.30 -9.54 16 14 C 0.10 1.13 4.43 -4.78 -0.02 1.11 16 15 C -0.13 -1.48 4.60 -27.38 -0.13 -1.60 16 16 C -0.12 -1.90 4.60 -27.32 -0.13 -2.02 16 17 C -0.10 -1.63 4.71 -27.77 -0.13 -1.76 16 18 C -0.12 -1.78 4.98 -27.69 -0.14 -1.92 16 19 C 0.16 3.09 2.67 -68.46 -0.18 2.91 16 20 H 0.05 0.93 8.11 -50.90 -0.41 0.52 16 21 N -0.71 -17.31 4.58 -53.37 -0.24 -17.56 16 22 C -0.23 -6.57 9.88 -15.06 -0.15 -6.72 16 23 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 26 Si 0.90 23.71 29.55 -169.99 -5.02 18.69 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 29 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 30 C 0.09 1.58 5.45 -3.50 -0.02 1.56 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.63 6.94 -51.93 -0.36 0.27 16 33 H 0.08 0.72 5.61 -51.93 -0.29 0.43 16 34 H 0.14 1.36 5.55 -52.49 -0.29 1.07 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.17 2.52 8.06 -52.48 -0.42 2.10 16 38 H 0.08 0.78 6.25 -51.76 -0.32 0.46 16 39 H 0.06 0.51 5.17 -51.24 -0.27 0.24 16 40 H 0.07 0.65 8.12 -51.51 -0.42 0.23 16 41 H 0.05 0.51 6.78 -51.40 -0.35 0.16 16 42 H 0.09 1.77 4.30 -52.43 -0.23 1.55 16 43 H 0.05 0.72 8.28 -50.96 -0.42 0.30 16 44 H 0.07 1.42 7.33 -51.84 -0.38 1.04 16 45 H 0.04 0.56 8.24 -51.28 -0.42 0.14 16 46 H 0.05 0.70 8.25 -51.16 -0.42 0.28 16 47 H 0.06 0.70 4.96 -51.94 -0.26 0.44 16 48 H 0.39 9.97 3.89 -40.82 -0.16 9.81 16 49 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 50 H 0.09 1.84 7.09 -51.79 -0.37 1.48 16 51 H 0.05 0.73 8.06 -51.68 -0.42 0.32 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -35.97 381.68 -9.14 -45.11 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.19 Total: 11.21 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.15 Total: -1.42 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.05 Total: -62.00 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.58 Total: -17.34 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.97 -9.14 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088378613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.258 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds