Wall clock time and date at job start Wed Apr 1 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 O 1.42894 * 109.47322 * 120.00249 * 2 1 3 5 5 C 1.35911 * 117.00328 * 275.85561 * 4 2 1 6 6 C 1.39146 * 120.47294 * 3.32515 * 5 4 2 7 7 C 1.38529 * 118.37699 * 179.75978 * 6 5 4 8 8 C 1.38259 * 119.21879 * 0.49440 * 7 6 5 9 9 N 1.31842 * 120.89039 * 359.76615 * 8 7 6 10 10 C 1.31842 * 121.77639 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46959 * 240.00408 * 2 1 3 12 12 O 1.21281 * 119.99930 * 258.79351 * 11 2 1 13 13 N 1.34865 * 120.00220 * 78.80090 * 11 2 1 14 14 C 1.45775 * 120.49300 * 355.01395 * 13 11 2 15 15 C 1.52316 * 114.04639 * 74.04889 * 14 13 11 16 16 C 1.52405 * 112.53826 * 23.43971 * 15 14 13 17 17 C 1.52452 * 111.42188 * 78.84746 * 16 15 14 18 18 C 1.51501 * 112.47227 * 302.25880 * 17 16 15 19 19 C 1.52615 * 112.52073 * 296.08361 * 18 17 16 20 20 H 1.10800 * 107.75586 * 225.63554 * 19 18 17 21 21 N 1.45674 * 112.57377 * 344.00238 * 19 18 17 22 22 C 1.36942 * 120.00078 * 209.11501 * 21 19 18 23 23 H 1.08001 * 119.99672 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99920 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00351 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47275 * 89.99592 * 26 24 22 28 28 H 1.48495 * 109.47183 * 209.99809 * 26 24 22 29 29 H 1.48505 * 109.47149 * 329.99803 * 26 24 22 30 30 C 1.47301 * 120.04385 * 178.81994 * 13 11 2 31 31 H 1.08999 * 109.46940 * 186.52512 * 1 2 3 32 32 H 1.09004 * 109.47108 * 306.52712 * 1 2 3 33 33 H 1.09002 * 109.47186 * 66.52552 * 1 2 3 34 34 H 1.07999 * 120.80755 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.38989 * 180.26471 * 7 6 5 36 36 H 1.07999 * 119.55681 * 179.75032 * 8 7 6 37 37 H 1.08004 * 119.65848 * 180.02562 * 10 9 8 38 38 H 1.09301 * 109.43958 * 197.83219 * 14 13 11 39 39 H 1.10205 * 107.81028 * 313.58620 * 14 13 11 40 40 H 1.09736 * 109.42116 * 145.08440 * 15 14 13 41 41 H 1.09938 * 109.21889 * 262.09754 * 15 14 13 42 42 H 1.08105 * 111.81174 * 313.46542 * 16 15 14 43 43 H 1.10696 * 107.85624 * 196.82147 * 16 15 14 44 44 H 1.09151 * 109.89864 * 178.81050 * 17 16 15 45 45 H 1.10146 * 108.40713 * 62.22753 * 17 16 15 46 46 H 1.10340 * 108.37707 * 176.29790 * 18 17 16 47 47 H 1.08979 * 110.39092 * 59.91391 * 18 17 16 48 48 H 0.96998 * 120.00484 * 29.11985 * 21 19 18 49 49 H 0.97003 * 120.00444 * 180.02562 * 25 24 22 50 50 H 1.09254 * 109.40258 * 15.92877 * 30 13 11 51 51 H 1.09441 * 109.12560 * 134.92448 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0956 0.0580 2.3085 6 6 1.6688 1.3822 2.3333 7 6 1.7750 2.0861 3.5217 8 6 2.3069 1.4582 4.6328 9 7 2.7072 0.2034 4.5743 10 6 2.6186 -0.5027 3.4644 11 6 2.0323 -0.7103 -1.2305 12 8 2.4269 -1.8545 -1.1517 13 7 2.0432 -0.0737 -2.4194 14 6 1.4724 1.2613 -2.5489 15 6 2.3257 2.3634 -1.9346 16 6 3.7955 1.9741 -1.8293 17 6 4.5064 2.1157 -3.1704 18 6 3.8616 1.2819 -4.2586 19 6 3.9456 -0.2153 -3.9750 20 1 4.2663 -0.7186 -4.9086 21 7 4.9255 -0.5354 -2.9458 22 6 5.5658 -1.7458 -2.9627 23 1 5.3445 -2.4629 -3.7394 24 6 6.4992 -2.0510 -1.9817 25 7 6.7693 -1.1769 -1.0355 26 14 7.3731 -3.7018 -2.0052 27 1 8.6189 -3.5912 -2.8059 28 1 7.7116 -4.1026 -0.6160 29 1 6.4836 -4.7242 -2.6125 30 6 2.5581 -0.7582 -3.6178 31 1 -0.3633 -1.0210 0.1168 32 1 -0.3633 0.6117 0.8258 33 1 -0.3634 0.4094 -0.9426 34 1 1.2614 1.8487 1.4485 35 1 1.4496 3.1142 3.5787 36 1 2.3960 2.0031 5.5610 37 1 2.9565 -1.5284 3.4551 38 1 1.2851 1.4761 -3.6041 39 1 0.4917 1.2589 -2.0462 40 1 2.2354 3.2747 -2.5393 41 1 1.9433 2.6005 -0.9315 42 1 3.9197 0.9812 -1.4201 43 1 4.2804 2.6687 -1.1168 44 1 5.5599 1.8514 -3.0621 45 1 4.4701 3.1740 -3.4733 46 1 4.3846 1.4852 -5.2087 47 1 2.8244 1.5834 -4.4037 48 1 5.1246 0.1087 -2.2484 49 1 7.4218 -1.3900 -0.3501 50 1 2.6168 -1.8321 -3.4253 51 1 1.8715 -0.5856 -4.4523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088378613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:47 Heat of formation + Delta-G solvation = -29.386215 kcal Electronic energy + Delta-G solvation = -33488.548480 eV Core-core repulsion = 29388.427418 eV Total energy + Delta-G solvation = -4100.121062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05367 -41.11294 -39.42950 -38.47232 -36.42114 -34.95792 -34.15904 -33.23246 -32.87529 -31.14727 -30.91143 -29.04434 -27.71179 -26.32100 -25.64847 -24.78474 -24.24833 -22.92135 -21.86041 -20.95227 -19.79160 -19.44563 -19.33068 -17.97323 -17.78583 -17.31958 -17.02029 -16.78472 -16.52297 -16.29700 -16.15449 -15.61285 -15.37431 -15.30722 -14.98532 -14.71911 -14.61049 -14.43678 -14.34895 -13.91374 -13.70901 -13.36553 -13.25496 -13.17394 -12.92542 -12.83005 -12.75093 -12.61647 -12.58518 -12.39357 -12.24854 -12.15672 -11.86734 -11.76423 -11.40509 -11.05074 -11.03525 -10.87864 -10.77940 -10.59682 -10.48165 -9.63258 -9.45451 -8.76356 -7.92044 -5.13805 0.13204 0.24847 1.36734 1.41383 1.46540 1.47684 1.85703 2.48726 2.56207 2.79415 3.34852 3.43720 3.54539 3.58612 3.76030 3.83216 3.89778 3.90350 4.00324 4.01473 4.14438 4.15647 4.16991 4.31458 4.34537 4.41780 4.50501 4.57844 4.61988 4.67433 4.73612 4.80849 4.87747 4.93152 4.98522 5.03219 5.06566 5.07311 5.11898 5.17450 5.21212 5.29369 5.46186 5.50597 5.50802 5.60331 5.68723 5.81500 6.18966 6.32532 6.58417 6.95826 7.36787 7.40413 8.26020 8.43207 9.31702 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.004838 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.969052 B = 5786.126499 C = 7340.477215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 H 0.116 0.884 4 O -0.316 6.316 5 C 0.069 3.931 6 C -0.166 4.166 7 C -0.114 4.114 8 C 0.045 3.955 9 N -0.472 5.472 10 C 0.041 3.959 11 C 0.509 3.491 12 O -0.567 6.567 13 N -0.582 5.582 14 C 0.086 3.914 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.110 4.110 19 C 0.151 3.849 20 H 0.037 0.963 21 N -0.718 5.718 22 C -0.221 4.221 23 H 0.064 0.936 24 C -0.075 4.075 25 N -0.965 5.965 26 Si 0.957 3.043 27 H -0.282 1.282 28 H -0.304 1.304 29 H -0.279 1.279 30 C 0.097 3.903 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.041 0.959 44 H 0.022 0.978 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.102 0.898 48 H 0.380 0.620 49 H 0.243 0.757 50 H 0.040 0.960 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.638 17.120 -0.017 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 H 0.133 0.867 4 O -0.228 6.228 5 C 0.021 3.979 6 C -0.193 4.193 7 C -0.133 4.133 8 C -0.113 4.113 9 N -0.181 5.181 10 C -0.116 4.116 11 C 0.296 3.704 12 O -0.444 6.444 13 N -0.315 5.315 14 C -0.036 4.036 15 C -0.168 4.168 16 C -0.159 4.159 17 C -0.140 4.140 18 C -0.148 4.148 19 C 0.041 3.959 20 H 0.055 0.945 21 N -0.360 5.360 22 C -0.353 4.353 23 H 0.082 0.918 24 C -0.267 4.267 25 N -0.617 5.617 26 Si 0.788 3.212 27 H -0.209 1.209 28 H -0.231 1.231 29 H -0.204 1.204 30 C -0.029 4.029 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.207 0.793 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.217 0.783 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.961 15.751 0.629 24.658 hybrid contribution 1.188 -1.187 -0.189 1.690 sum -17.773 14.563 0.440 22.982 Atomic orbital electron populations 1.22422 0.89838 1.04222 1.06116 1.22605 0.97588 0.97102 0.82143 0.86709 1.86244 1.81301 1.38754 1.16488 1.20422 0.97336 0.92808 0.87351 1.22106 1.03100 0.92289 1.01768 1.22463 0.96917 1.02606 0.91339 1.23356 0.96783 0.90339 1.00817 1.67702 1.15100 1.09476 1.25870 1.22113 1.00979 1.01117 0.87373 1.20494 0.78146 0.86354 0.85378 1.90756 1.47415 1.20664 1.85581 1.47525 1.60428 1.16551 1.06996 1.22041 0.96332 0.80100 1.05124 1.21960 0.92748 0.99269 1.02823 1.21369 0.96947 1.00512 0.97085 1.20993 0.98025 1.00044 0.94925 1.21591 1.02809 0.92494 0.97858 1.20866 0.88392 0.95590 0.91054 0.94489 1.42511 1.45426 1.16649 1.31397 1.19485 1.14232 0.94270 1.07348 0.91785 1.25315 1.02263 1.00919 0.98162 1.69786 1.38443 1.36338 1.17136 0.85358 0.78805 0.81049 0.75958 1.20854 1.23085 1.20415 1.22685 0.97006 0.96648 0.86513 0.92372 0.88396 0.86940 0.81439 0.79775 0.79349 0.83973 0.86535 0.88738 0.87171 0.90704 0.94601 0.94023 0.95937 0.90194 0.92366 0.87975 0.78316 0.94844 0.94170 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 9.02 71.98 0.65 -2.56 16 2 C 0.06 1.90 1.92 29.85 0.06 1.96 16 3 H 0.12 2.79 3.31 -2.39 -0.01 2.78 16 4 O -0.32 -12.00 9.42 -74.22 -0.70 -12.70 16 5 C 0.07 2.19 6.61 22.60 0.15 2.34 16 6 C -0.17 -3.60 8.39 22.56 0.19 -3.41 16 7 C -0.11 -1.93 10.11 22.34 0.23 -1.71 16 8 C 0.04 0.95 11.18 84.70 0.95 1.90 16 9 N -0.47 -14.36 10.36 -195.44 -2.02 -16.38 16 10 C 0.04 1.41 11.14 84.80 0.94 2.35 16 11 C 0.51 19.51 5.80 87.64 0.51 20.02 16 12 O -0.57 -30.01 16.01 15.30 0.24 -29.77 16 13 N -0.58 -17.20 1.71 -819.31 -1.40 -18.60 16 14 C 0.09 1.40 4.43 86.29 0.38 1.78 16 15 C -0.13 -2.13 4.60 30.17 0.14 -1.99 16 16 C -0.12 -3.55 4.60 30.22 0.14 -3.41 16 17 C -0.10 -3.01 4.71 29.92 0.14 -2.87 16 18 C -0.11 -2.95 4.98 29.98 0.15 -2.80 16 19 C 0.15 5.69 2.67 45.09 0.12 5.81 16 20 H 0.04 1.45 8.11 -1.42 -0.01 1.44 16 21 N -0.72 -36.80 4.58 -322.78 -1.48 -38.27 16 22 C -0.22 -13.16 9.88 84.03 0.83 -12.33 16 23 H 0.06 3.74 7.82 -2.91 -0.02 3.72 16 24 C -0.07 -4.69 5.50 84.86 0.47 -4.22 16 25 N -0.97 -63.87 13.06 21.65 0.28 -63.59 16 26 Si 0.96 51.54 29.55 68.60 2.03 53.57 16 27 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 28 H -0.30 -16.74 7.11 99.48 0.71 -16.04 16 29 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 30 C 0.10 3.23 5.45 86.30 0.47 3.69 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.33 6.94 -2.39 -0.02 1.31 16 33 H 0.11 1.38 5.61 -2.39 -0.01 1.36 16 34 H 0.17 2.47 5.55 -2.91 -0.02 2.45 16 35 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.14 5.16 8.06 -2.91 -0.02 5.13 16 38 H 0.12 1.23 6.25 -2.23 -0.01 1.21 16 39 H 0.09 0.96 5.17 -1.74 -0.01 0.96 16 40 H 0.11 1.10 8.12 -1.99 -0.02 1.08 16 41 H 0.07 0.94 6.78 -1.89 -0.01 0.93 16 42 H 0.04 1.46 4.30 -2.86 -0.01 1.45 16 43 H 0.04 1.22 8.28 -1.47 -0.01 1.21 16 44 H 0.02 0.87 7.33 -2.31 -0.02 0.86 16 45 H 0.08 1.78 8.24 -1.77 -0.01 1.76 16 46 H 0.06 1.48 8.25 -1.67 -0.01 1.46 16 47 H 0.10 1.85 4.96 -2.40 -0.01 1.84 16 48 H 0.38 20.70 3.89 -92.71 -0.36 20.34 16 49 H 0.24 15.86 8.31 -92.71 -0.77 15.09 16 50 H 0.04 1.74 7.09 -2.25 -0.02 1.73 16 51 H 0.11 2.45 8.06 -2.15 -0.02 2.44 16 Total: -1.00 -93.18 381.68 4.11 -89.07 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.64 Total: 32.11 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.51 Total: 4.56 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -4.62 Total: -136.85 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.45 Total: -42.47 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.03 Total: 53.57 kcal Total: -93.18 4.11 -89.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088378613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.688 kcal (2) G-P(sol) polarization free energy of solvation -93.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds