Wall clock time and date at job start Wed Apr 1 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 O 1.42893 * 109.47050 * 119.99496 * 2 1 3 5 5 C 1.35675 * 117.00318 * 269.99961 * 4 2 1 6 6 C 1.38917 * 119.68937 * 179.72659 * 5 4 2 7 7 C 1.38382 * 119.11367 * 179.75664 * 6 5 4 8 8 C 1.38830 * 118.48550 * 0.51306 * 7 6 5 9 9 C 1.38050 * 119.28517 * 359.72997 * 8 7 6 10 10 N 1.31959 * 120.83861 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47352 * 239.99912 * 2 1 3 12 12 O 1.21283 * 120.00014 * 250.18469 * 11 2 1 13 13 N 1.34781 * 120.00245 * 70.18308 * 11 2 1 14 14 C 1.46960 * 120.36127 * 175.32365 * 13 11 2 15 15 C 1.52334 * 109.10017 * 291.65679 * 14 13 11 16 16 C 1.53798 * 109.16397 * 287.30895 * 15 14 13 17 17 C 1.52444 * 109.40929 * 77.83705 * 16 15 14 18 18 C 1.53958 * 110.73043 * 246.27398 * 17 16 15 19 19 C 1.52883 * 109.72882 * 44.36017 * 18 17 16 20 20 H 1.08999 * 109.48497 * 312.92308 * 19 18 17 21 21 N 1.46495 * 109.48331 * 192.86770 * 19 18 17 22 22 C 1.36944 * 119.99703 * 154.99994 * 21 19 18 23 23 H 1.07997 * 119.99906 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99642 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00529 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99662 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47147 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47141 * 120.00152 * 26 24 22 29 29 H 1.48507 * 109.47144 * 240.00265 * 26 24 22 30 30 C 1.45331 * 120.36143 * 355.34228 * 13 11 2 31 31 H 1.08997 * 109.46970 * 65.01624 * 1 2 3 32 32 H 1.09001 * 109.46570 * 185.01011 * 1 2 3 33 33 H 1.08991 * 109.47473 * 305.01262 * 1 2 3 34 34 H 1.08002 * 120.44261 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.75751 * 180.24501 * 7 6 5 36 36 H 1.07998 * 120.35804 * 179.75060 * 8 7 6 37 37 H 1.08002 * 119.57676 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.52910 * 171.77933 * 14 13 11 39 39 H 1.08989 * 109.59801 * 51.58752 * 14 13 11 40 40 H 1.09006 * 109.52512 * 167.40163 * 15 14 13 41 41 H 1.09005 * 109.52157 * 47.21089 * 15 14 13 42 42 H 1.08997 * 109.47930 * 317.85600 * 16 15 14 43 43 H 1.08996 * 109.48541 * 197.81704 * 16 15 14 44 44 H 1.08998 * 109.22962 * 125.95209 * 17 16 15 45 45 H 1.09005 * 109.19418 * 6.56981 * 17 16 15 46 46 H 1.08998 * 109.42678 * 164.44279 * 18 17 16 47 47 H 1.09005 * 109.42325 * 284.28258 * 18 17 16 48 48 H 0.96995 * 120.00233 * 334.99767 * 21 19 18 49 49 H 0.97000 * 120.00363 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.67865 * 256.36243 * 30 13 11 51 51 H 1.09000 * 109.67816 * 16.90670 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2117 0.0831 2.2741 6 6 2.6688 -0.5155 3.4414 7 6 2.8790 0.2683 4.5623 8 6 2.6129 1.6283 4.4787 9 6 2.1555 2.1548 3.2873 10 7 1.9694 1.3826 2.2336 11 6 2.0324 -0.7104 -1.2304 12 8 2.5703 -1.7927 -1.1286 13 7 1.8840 -0.1431 -2.4440 14 6 2.4608 -0.7790 -3.6367 15 6 3.9801 -0.7020 -3.5573 16 6 4.4263 0.7472 -3.8144 17 6 4.1983 1.5782 -2.5569 18 6 3.1118 2.6423 -2.7965 19 6 1.9327 2.0172 -3.5423 20 1 2.3038 1.4313 -4.3832 21 7 1.0498 3.0767 -4.0362 22 6 0.2479 2.8487 -5.1226 23 1 0.2667 1.8880 -5.6155 24 6 -0.5891 3.8525 -5.5903 25 7 -0.6116 5.0236 -4.9899 26 14 -1.6835 3.5413 -7.0718 27 1 -1.4727 2.1549 -7.5603 28 1 -3.1056 3.7175 -6.6824 29 1 -1.3425 4.5038 -8.1501 30 6 1.1522 1.1043 -2.5872 31 1 -0.3633 0.4340 -0.9315 32 1 -0.3632 -1.0238 0.0898 33 1 -0.3634 0.5896 0.8416 34 1 2.8617 -1.5777 3.4724 35 1 3.2376 -0.1688 5.4825 36 1 2.7624 2.2674 5.3362 37 1 1.9474 3.2123 3.2169 38 1 2.1158 -0.2584 -4.5301 39 1 2.1505 -1.8229 -3.6806 40 1 4.4180 -1.3571 -4.3105 41 1 4.3093 -1.0140 -2.5660 42 1 3.8462 1.1656 -4.6368 43 1 5.4853 0.7612 -4.0722 44 1 5.1294 2.0721 -2.2793 45 1 3.8846 0.9215 -1.7454 46 1 2.7690 3.0326 -1.8382 47 1 3.5265 3.4563 -3.3912 48 1 1.0332 3.9397 -3.5937 49 1 -1.1968 5.7249 -5.3165 50 1 0.1625 0.9042 -2.9977 51 1 1.0561 1.5872 -1.6147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088414267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:25 Heat of formation + Delta-G solvation = -10.663377 kcal Electronic energy + Delta-G solvation = -32436.498685 eV Core-core repulsion = 28337.189507 eV Total energy + Delta-G solvation = -4099.309179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.02475 -40.24703 -38.28810 -37.21139 -34.62062 -34.24214 -32.71601 -32.54328 -31.81323 -30.29683 -29.75755 -27.20474 -26.13780 -25.00452 -24.04315 -23.61247 -23.03156 -21.96538 -21.51587 -19.53817 -18.87562 -18.59034 -17.34950 -17.04214 -16.55807 -16.13426 -15.94460 -15.76176 -15.57438 -14.70160 -14.65767 -14.44164 -14.18094 -14.05759 -13.62547 -13.51174 -13.35767 -13.26421 -13.18929 -12.86354 -12.53919 -12.35402 -12.29544 -12.15447 -11.81824 -11.58412 -11.42566 -11.24366 -11.11815 -10.91988 -10.84303 -10.67312 -10.44809 -10.29195 -10.18913 -10.15427 -9.81741 -9.78069 -9.72996 -9.47658 -8.98002 -8.66795 -8.26073 -7.06282 -5.85733 -3.15814 0.96393 1.07228 2.52081 2.74212 3.37550 3.43563 3.45863 3.48990 3.60886 4.10915 4.47475 4.57349 4.64167 4.81534 4.89038 4.95424 4.96348 5.03978 5.07908 5.13037 5.14470 5.36682 5.43005 5.45445 5.50525 5.59106 5.64615 5.66503 5.70231 5.76411 5.81060 5.86829 5.92057 5.97330 5.97980 6.08069 6.11926 6.20222 6.24224 6.25486 6.29369 6.39981 6.54365 6.59319 6.69980 6.77867 6.95155 7.10823 7.60325 7.64403 7.69109 8.30368 8.33758 9.44040 9.99344 10.34147 11.36275 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003254 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.250976 B = 8602.960918 C = 9567.320772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.278 6.278 5 C 0.326 3.674 6 C -0.192 4.192 7 C -0.042 4.042 8 C -0.217 4.217 9 C 0.143 3.857 10 N -0.539 5.539 11 C 0.517 3.483 12 O -0.534 6.534 13 N -0.591 5.591 14 C 0.117 3.883 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.124 4.124 19 C 0.157 3.843 20 H 0.069 0.931 21 N -0.719 5.719 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.074 3.926 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 -8.201 15.837 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.132 0.868 4 O -0.184 6.184 5 C 0.146 3.854 6 C -0.212 4.212 7 C -0.067 4.067 8 C -0.238 4.238 9 C -0.013 4.013 10 N -0.262 5.262 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.325 5.325 14 C -0.005 4.005 15 C -0.174 4.174 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.162 4.162 19 C 0.046 3.954 20 H 0.087 0.913 21 N -0.359 5.359 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.735 3.265 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.051 4.051 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.930 -8.752 14.867 18.987 hybrid contribution -0.551 0.175 0.128 0.592 sum 7.379 -8.577 14.995 18.785 Atomic orbital electron populations 1.22286 0.92337 1.03526 1.04623 1.22130 0.96012 0.97983 0.82520 0.86773 1.86360 1.79689 1.34565 1.17744 1.19942 0.90857 0.87447 0.87104 1.21079 1.06560 1.02137 0.91460 1.21400 0.94252 0.93467 0.97593 1.21978 1.05590 0.96202 0.99997 1.22476 0.92251 0.99330 0.87248 1.67314 1.21550 1.04714 1.32655 1.20066 0.79680 0.85731 0.84208 1.90675 1.43637 1.20572 1.86206 1.47780 1.54038 1.24633 1.06011 1.21525 0.93224 0.98045 0.87671 1.22038 0.95715 0.96940 1.02714 1.21840 1.00771 0.94866 0.98935 1.21654 0.98186 0.97517 0.97823 1.22040 0.95855 0.97974 1.00371 1.20926 0.89442 0.90591 0.94449 0.91310 1.42419 1.47084 1.11927 1.34504 1.19241 1.15505 0.97972 1.04788 0.91110 1.24740 1.00278 0.95998 0.99503 1.69664 1.41913 1.03690 1.42327 0.86167 0.80428 0.77359 0.82502 1.20506 1.21834 1.21837 1.22961 0.96751 0.83428 1.02006 0.89314 0.91426 0.90883 0.84093 0.84263 0.84613 0.82246 0.88885 0.91374 0.91333 0.90977 0.90304 0.92594 0.92986 0.92646 0.92499 0.91475 0.78085 0.93452 0.90637 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.15 37.16 0.34 -1.95 16 2 C 0.07 1.09 2.06 -27.88 -0.06 1.03 16 3 H 0.11 1.71 6.00 -51.93 -0.31 1.40 16 4 O -0.28 -4.29 9.31 -38.43 -0.36 -4.65 16 5 C 0.33 4.38 7.45 -17.12 -0.13 4.25 16 6 C -0.19 -2.06 10.04 -39.28 -0.39 -2.45 16 7 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 8 C -0.22 -1.73 10.11 -39.43 -0.40 -2.13 16 9 C 0.14 1.41 11.18 -17.57 -0.20 1.21 16 10 N -0.54 -6.94 8.65 -13.33 -0.12 -7.05 16 11 C 0.52 8.48 5.45 -10.99 -0.06 8.42 16 12 O -0.53 -10.20 15.47 -14.15 -0.22 -10.41 16 13 N -0.59 -9.06 1.68 -174.37 -0.29 -9.35 16 14 C 0.12 1.69 5.17 -4.13 -0.02 1.67 16 15 C -0.14 -1.83 5.56 -26.66 -0.15 -1.97 16 16 C -0.13 -1.70 5.49 -26.60 -0.15 -1.85 16 17 C -0.11 -1.62 5.40 -26.52 -0.14 -1.76 16 18 C -0.12 -1.98 5.22 -26.29 -0.14 -2.11 16 19 C 0.16 2.80 2.29 -67.76 -0.16 2.64 16 20 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 21 N -0.72 -16.41 5.12 -53.26 -0.27 -16.68 16 22 C -0.24 -6.25 9.88 -15.06 -0.15 -6.40 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 26 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 C 0.07 1.21 4.10 -4.44 -0.02 1.19 16 31 H 0.09 1.20 5.74 -51.93 -0.30 0.90 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.09 1.34 6.07 -51.93 -0.32 1.02 16 39 H 0.07 0.97 8.05 -51.94 -0.42 0.56 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.10 6.35 -51.93 -0.33 0.77 16 42 H 0.08 1.15 5.47 -51.93 -0.28 0.86 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.84 5.37 -51.93 -0.28 0.56 16 46 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.39 9.50 7.80 -40.82 -0.32 9.18 16 49 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 51 H 0.08 1.18 4.83 -51.93 -0.25 0.93 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -31.05 390.36 -9.55 -40.60 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.57 Total: 12.47 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.31 Total: -1.29 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.04 Total: -59.02 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.58 Total: -15.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.05 -9.55 -40.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.941 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds