Wall clock time and date at job start Wed Apr 1 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 O 1.42893 * 109.47050 * 119.99496 * 2 1 3 5 5 C 1.35675 * 117.00318 * 269.99961 * 4 2 1 6 6 C 1.38917 * 119.68937 * 179.72659 * 5 4 2 7 7 C 1.38382 * 119.11367 * 179.75664 * 6 5 4 8 8 C 1.38830 * 118.48550 * 0.51306 * 7 6 5 9 9 C 1.38050 * 119.28517 * 359.72997 * 8 7 6 10 10 N 1.31959 * 120.83861 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47352 * 239.99912 * 2 1 3 12 12 O 1.21283 * 120.00014 * 250.18469 * 11 2 1 13 13 N 1.34781 * 120.00245 * 70.18308 * 11 2 1 14 14 C 1.46960 * 120.36127 * 175.32365 * 13 11 2 15 15 C 1.52334 * 109.10017 * 291.65679 * 14 13 11 16 16 C 1.53798 * 109.16397 * 287.30895 * 15 14 13 17 17 C 1.52444 * 109.40929 * 77.83705 * 16 15 14 18 18 C 1.53958 * 110.73043 * 246.27398 * 17 16 15 19 19 C 1.52883 * 109.72882 * 44.36017 * 18 17 16 20 20 H 1.08999 * 109.48497 * 312.92308 * 19 18 17 21 21 N 1.46495 * 109.48331 * 192.86770 * 19 18 17 22 22 C 1.36944 * 119.99703 * 154.99994 * 21 19 18 23 23 H 1.07997 * 119.99906 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99642 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00529 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99662 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47147 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47141 * 120.00152 * 26 24 22 29 29 H 1.48507 * 109.47144 * 240.00265 * 26 24 22 30 30 C 1.45331 * 120.36143 * 355.34228 * 13 11 2 31 31 H 1.08997 * 109.46970 * 65.01624 * 1 2 3 32 32 H 1.09001 * 109.46570 * 185.01011 * 1 2 3 33 33 H 1.08991 * 109.47473 * 305.01262 * 1 2 3 34 34 H 1.08002 * 120.44261 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.75751 * 180.24501 * 7 6 5 36 36 H 1.07998 * 120.35804 * 179.75060 * 8 7 6 37 37 H 1.08002 * 119.57676 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.52910 * 171.77933 * 14 13 11 39 39 H 1.08989 * 109.59801 * 51.58752 * 14 13 11 40 40 H 1.09006 * 109.52512 * 167.40163 * 15 14 13 41 41 H 1.09005 * 109.52157 * 47.21089 * 15 14 13 42 42 H 1.08997 * 109.47930 * 317.85600 * 16 15 14 43 43 H 1.08996 * 109.48541 * 197.81704 * 16 15 14 44 44 H 1.08998 * 109.22962 * 125.95209 * 17 16 15 45 45 H 1.09005 * 109.19418 * 6.56981 * 17 16 15 46 46 H 1.08998 * 109.42678 * 164.44279 * 18 17 16 47 47 H 1.09005 * 109.42325 * 284.28258 * 18 17 16 48 48 H 0.96995 * 120.00233 * 334.99767 * 21 19 18 49 49 H 0.97000 * 120.00363 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.67865 * 256.36243 * 30 13 11 51 51 H 1.09000 * 109.67816 * 16.90670 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2117 0.0831 2.2741 6 6 2.6688 -0.5155 3.4414 7 6 2.8790 0.2683 4.5623 8 6 2.6129 1.6283 4.4787 9 6 2.1555 2.1548 3.2873 10 7 1.9694 1.3826 2.2336 11 6 2.0324 -0.7104 -1.2304 12 8 2.5703 -1.7927 -1.1286 13 7 1.8840 -0.1431 -2.4440 14 6 2.4608 -0.7790 -3.6367 15 6 3.9801 -0.7020 -3.5573 16 6 4.4263 0.7472 -3.8144 17 6 4.1983 1.5782 -2.5569 18 6 3.1118 2.6423 -2.7965 19 6 1.9327 2.0172 -3.5423 20 1 2.3038 1.4313 -4.3832 21 7 1.0498 3.0767 -4.0362 22 6 0.2479 2.8487 -5.1226 23 1 0.2667 1.8880 -5.6155 24 6 -0.5891 3.8525 -5.5903 25 7 -0.6116 5.0236 -4.9899 26 14 -1.6835 3.5413 -7.0718 27 1 -1.4727 2.1549 -7.5603 28 1 -3.1056 3.7175 -6.6824 29 1 -1.3425 4.5038 -8.1501 30 6 1.1522 1.1043 -2.5872 31 1 -0.3633 0.4340 -0.9315 32 1 -0.3632 -1.0238 0.0898 33 1 -0.3634 0.5896 0.8416 34 1 2.8617 -1.5777 3.4724 35 1 3.2376 -0.1688 5.4825 36 1 2.7624 2.2674 5.3362 37 1 1.9474 3.2123 3.2169 38 1 2.1158 -0.2584 -4.5301 39 1 2.1505 -1.8229 -3.6806 40 1 4.4180 -1.3571 -4.3105 41 1 4.3093 -1.0140 -2.5660 42 1 3.8462 1.1656 -4.6368 43 1 5.4853 0.7612 -4.0722 44 1 5.1294 2.0721 -2.2793 45 1 3.8846 0.9215 -1.7454 46 1 2.7690 3.0326 -1.8382 47 1 3.5265 3.4563 -3.3912 48 1 1.0332 3.9397 -3.5937 49 1 -1.1968 5.7249 -5.3165 50 1 0.1625 0.9042 -2.9977 51 1 1.0561 1.5872 -1.6147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088414267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:24 Heat of formation + Delta-G solvation = -28.679198 kcal Electronic energy + Delta-G solvation = -32437.279910 eV Core-core repulsion = 28337.189507 eV Total energy + Delta-G solvation = -4100.090403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12079 -41.29814 -39.39407 -38.46673 -36.23890 -35.51445 -34.08755 -33.46386 -33.08538 -31.58201 -30.90294 -28.69019 -27.41395 -26.27585 -25.44192 -24.57027 -24.13420 -23.08760 -22.84412 -20.86614 -20.07386 -19.59239 -19.18234 -18.28424 -17.60948 -17.27747 -17.00316 -16.82447 -16.73963 -16.23890 -15.84869 -15.45000 -15.44449 -15.33051 -15.12650 -14.86415 -14.53468 -14.38797 -14.17670 -14.01302 -13.91056 -13.65314 -13.50772 -13.15418 -12.93847 -12.90061 -12.77798 -12.76901 -12.61409 -12.31530 -12.21182 -12.11202 -11.92042 -11.78590 -11.53982 -11.48861 -11.20170 -11.03142 -10.89609 -10.65544 -10.54475 -9.62990 -9.49598 -8.96242 -7.90832 -5.19324 0.20382 0.33858 1.37898 1.47855 1.50068 1.51748 1.59789 2.33490 2.59290 2.83066 3.26976 3.30242 3.42442 3.72211 3.80532 3.83034 3.93248 3.99788 4.05099 4.08195 4.11435 4.17413 4.21797 4.23011 4.35090 4.37967 4.48676 4.51610 4.59366 4.64407 4.64581 4.73588 4.80939 4.82666 4.92525 4.95610 5.00971 5.07862 5.10102 5.17189 5.28707 5.28776 5.34213 5.37675 5.43588 5.54610 5.57623 5.65237 6.15795 6.30280 6.33945 6.87280 7.02264 7.38276 8.11196 8.35072 9.32259 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003254 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.250976 B = 8602.960918 C = 9567.320772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.110 0.890 4 O -0.299 6.299 5 C 0.290 3.710 6 C -0.202 4.202 7 C -0.035 4.035 8 C -0.202 4.202 9 C 0.124 3.876 10 N -0.564 5.564 11 C 0.518 3.482 12 O -0.562 6.562 13 N -0.585 5.585 14 C 0.112 3.888 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.116 4.116 19 C 0.157 3.843 20 H 0.073 0.927 21 N -0.728 5.728 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.069 4.069 25 N -0.965 5.965 26 Si 0.962 3.038 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.298 1.298 30 C 0.089 3.911 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.180 0.820 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.374 0.626 49 H 0.249 0.751 50 H 0.061 0.939 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -8.786 17.157 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.128 0.872 4 O -0.206 6.206 5 C 0.112 3.888 6 C -0.222 4.222 7 C -0.061 4.061 8 C -0.222 4.222 9 C -0.031 4.031 10 N -0.288 5.288 11 C 0.306 3.694 12 O -0.441 6.441 13 N -0.317 5.317 14 C -0.010 4.010 15 C -0.166 4.166 16 C -0.160 4.160 17 C -0.145 4.145 18 C -0.154 4.154 19 C 0.048 3.952 20 H 0.090 0.910 21 N -0.368 5.368 22 C -0.364 4.364 23 H 0.096 0.904 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.793 3.207 27 H -0.190 1.190 28 H -0.225 1.225 29 H -0.225 1.225 30 C -0.036 4.036 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.194 0.806 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.206 0.794 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.012 -9.376 16.197 20.772 hybrid contribution -0.786 0.342 -0.132 0.867 sum 8.226 -9.034 16.065 20.184 Atomic orbital electron populations 1.22210 0.91578 1.03548 1.04592 1.21993 0.96467 0.97345 0.82224 0.87195 1.86316 1.80508 1.35516 1.18303 1.20244 0.93251 0.88041 0.87259 1.21349 1.06519 1.02889 0.91464 1.21871 0.92852 0.93439 0.97895 1.22401 1.03035 0.96573 1.00163 1.22988 0.92551 1.00140 0.87471 1.67236 1.22373 1.04839 1.34317 1.20338 0.79030 0.85360 0.84719 1.90652 1.44985 1.21836 1.86601 1.47726 1.53650 1.24060 1.06311 1.21671 0.94079 0.98065 0.87168 1.21965 0.94786 0.97396 1.02418 1.21809 1.01840 0.94433 0.97944 1.21597 0.98005 0.96898 0.97974 1.21934 0.95506 0.98161 0.99838 1.21082 0.89387 0.89738 0.95013 0.90954 1.42560 1.47514 1.12618 1.34078 1.19584 1.14448 0.97716 1.04668 0.90400 1.25427 1.02338 0.96153 1.02287 1.69802 1.43217 1.04522 1.44057 0.85233 0.78344 0.77592 0.79556 1.18999 1.22502 1.22513 1.22615 0.95671 0.83590 1.01728 0.89647 0.91445 0.90360 0.83547 0.80598 0.81086 0.80313 0.88766 0.91211 0.89159 0.92657 0.91208 0.90696 0.91559 0.93677 0.92482 0.92259 0.79367 0.94171 0.92087 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.15 71.98 0.66 -3.76 16 2 C 0.08 2.42 2.06 29.85 0.06 2.48 16 3 H 0.11 3.38 6.00 -2.39 -0.01 3.37 16 4 O -0.30 -9.48 9.31 -71.09 -0.66 -10.14 16 5 C 0.29 7.82 7.45 84.79 0.63 8.45 16 6 C -0.20 -4.13 10.04 22.47 0.23 -3.91 16 7 C -0.04 -0.48 10.17 22.45 0.23 -0.25 16 8 C -0.20 -2.59 10.11 22.37 0.23 -2.36 16 9 C 0.12 2.24 11.18 84.63 0.95 3.19 16 10 N -0.56 -14.39 8.65 -308.95 -2.67 -17.06 16 11 C 0.52 17.16 5.45 87.66 0.48 17.64 16 12 O -0.56 -21.69 15.47 15.80 0.24 -21.45 16 13 N -0.58 -17.86 1.68 -823.98 -1.39 -19.25 16 14 C 0.11 3.13 5.17 86.07 0.45 3.57 16 15 C -0.13 -3.25 5.56 30.64 0.17 -3.08 16 16 C -0.12 -3.09 5.49 30.68 0.17 -2.93 16 17 C -0.11 -2.91 5.40 30.73 0.17 -2.74 16 18 C -0.12 -3.64 5.22 30.88 0.16 -3.48 16 19 C 0.16 5.55 2.29 45.10 0.10 5.66 16 20 H 0.07 2.56 3.29 -2.39 -0.01 2.55 16 21 N -0.73 -33.40 5.12 -322.42 -1.65 -35.05 16 22 C -0.23 -11.86 9.88 84.03 0.83 -11.03 16 23 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 25 N -0.97 -56.39 13.06 21.65 0.28 -56.11 16 26 Si 0.96 44.27 29.55 68.60 2.03 46.30 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 30 C 0.09 2.93 4.10 86.75 0.36 3.28 16 31 H 0.08 2.35 5.74 -2.39 -0.01 2.33 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.09 2.62 6.07 -2.39 -0.01 2.60 16 39 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.05 1.64 6.35 -2.38 -0.02 1.63 16 42 H 0.07 1.91 5.47 -2.39 -0.01 1.90 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.34 5.37 -2.38 -0.01 1.33 16 46 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 47 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.37 18.77 7.80 -92.71 -0.72 18.04 16 49 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.06 2.20 7.91 -2.39 -0.02 2.18 16 51 H 0.08 2.57 4.83 -2.39 -0.01 2.56 16 Total: -1.00 -67.87 390.36 2.74 -65.13 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.23 Total: 40.19 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.32 Total: 7.43 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.43 Total: -127.46 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.42 Total: -31.59 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.87 2.74 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.450 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds