Wall clock time and date at job start Wed Apr 1 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46886 * 2 1 4 4 O 1.42901 * 109.46629 * 240.00805 * 2 1 3 5 5 C 1.35673 * 117.00044 * 90.00167 * 4 2 1 6 6 C 1.38926 * 119.68692 * 179.72695 * 5 4 2 7 7 C 1.38374 * 119.11465 * 179.74898 * 6 5 4 8 8 C 1.38830 * 118.48162 * 0.51234 * 7 6 5 9 9 C 1.38040 * 119.29478 * 359.72608 * 8 7 6 10 10 N 1.31970 * 120.83185 * 0.02752 * 9 8 7 11 11 C 1.50700 * 109.47366 * 120.00989 * 2 1 3 12 12 O 1.21275 * 120.00071 * 107.03620 * 11 2 1 13 13 N 1.34777 * 119.99248 * 286.75518 * 11 2 1 14 14 C 1.46970 * 120.35907 * 174.52955 * 13 11 2 15 15 C 1.51799 * 109.39791 * 291.89499 * 14 13 11 16 16 C 1.53800 * 109.06114 * 287.19662 * 15 14 13 17 17 C 1.52442 * 109.40357 * 77.78510 * 16 15 14 18 18 C 1.53949 * 110.73561 * 246.27379 * 17 16 15 19 19 C 1.52880 * 109.72861 * 44.36427 * 18 17 16 20 20 H 1.08996 * 109.50523 * 312.91806 * 19 18 17 21 21 N 1.46505 * 109.48864 * 192.87136 * 19 18 17 22 22 C 1.36929 * 120.00023 * 155.08834 * 21 19 18 23 23 H 1.08001 * 120.00550 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99756 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00139 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46991 * 60.00584 * 26 24 22 28 28 H 1.48508 * 109.46750 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47470 * 300.00004 * 26 24 22 30 30 C 1.45332 * 120.37384 * 354.80328 * 13 11 2 31 31 H 1.09002 * 109.46938 * 305.35586 * 1 2 3 32 32 H 1.08995 * 109.47606 * 65.35560 * 1 2 3 33 33 H 1.08998 * 109.47120 * 185.36541 * 1 2 3 34 34 H 1.08007 * 120.43996 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.75884 * 180.23864 * 7 6 5 36 36 H 1.08000 * 120.34856 * 179.70536 * 8 7 6 37 37 H 1.08001 * 119.58855 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.53635 * 51.52940 * 14 13 11 39 39 H 1.08998 * 109.52958 * 171.75197 * 14 13 11 40 40 H 1.08994 * 109.61283 * 167.29281 * 15 14 13 41 41 H 1.09003 * 109.58500 * 47.07961 * 15 14 13 42 42 H 1.09001 * 109.47924 * 317.80789 * 16 15 14 43 43 H 1.08999 * 109.48444 * 197.76736 * 16 15 14 44 44 H 1.09000 * 109.22470 * 125.95154 * 17 16 15 45 45 H 1.09001 * 109.19373 * 6.57712 * 17 16 15 46 46 H 1.09006 * 109.42986 * 284.29041 * 18 17 16 47 47 H 1.08996 * 109.43378 * 164.44761 * 18 17 16 48 48 H 0.97005 * 119.99461 * 335.08923 * 21 19 18 49 49 H 0.97000 * 120.00109 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.67392 * 256.39706 * 30 13 11 51 51 H 1.09004 * 109.67151 * 16.92405 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2115 0.0832 -2.2742 6 6 2.6794 -0.5135 -3.4382 7 6 2.8796 0.2685 -4.5621 8 6 2.6136 1.6285 -4.4783 9 6 2.1555 2.1550 -3.2873 10 7 1.9694 1.3827 -2.2335 11 6 2.0324 -0.7106 1.2303 12 8 2.5246 -1.8148 1.1343 13 7 1.9397 -0.1165 2.4365 14 6 2.3155 -0.8470 3.6552 15 6 1.3193 -1.9660 3.8997 16 6 -0.0082 -1.3594 4.3849 17 6 -0.7650 -0.7798 3.1953 18 6 -0.8667 0.7522 3.3079 19 6 0.4851 1.3296 3.7281 20 1 0.8812 0.7560 4.5660 21 7 0.3154 2.7282 4.1302 22 6 1.2049 3.3039 4.9976 23 1 2.0317 2.7272 5.3851 24 6 1.0438 4.6289 5.3789 25 7 0.0359 5.3316 4.9071 26 14 2.2568 5.4141 6.5628 27 1 3.6197 5.3733 5.9744 28 1 1.8653 6.8254 6.8087 29 1 2.2492 4.6679 7.8466 30 6 1.4616 1.2514 2.5472 31 1 -0.3633 0.5947 0.8382 32 1 -0.3634 0.4285 -0.9340 33 1 -0.3633 -1.0231 0.0961 34 1 2.8799 -1.5744 -3.4669 35 1 3.2389 -0.1683 -5.4821 36 1 2.7639 2.2678 -5.3357 37 1 1.9474 3.2124 -3.2167 38 1 3.3106 -1.2743 3.5318 39 1 2.3138 -0.1640 4.5046 40 1 1.7093 -2.6436 4.6590 41 1 1.1518 -2.5150 2.9730 42 1 0.1959 -0.5683 5.1064 43 1 -0.6114 -2.1351 4.8566 44 1 -1.7682 -1.2050 3.1665 45 1 -0.2394 -1.0380 2.2759 46 1 -1.6191 1.0118 4.0527 47 1 -1.1545 1.1684 2.3426 48 1 -0.4270 3.2462 3.7818 49 1 -0.0768 6.2574 5.1738 50 1 2.3034 1.9215 2.7219 51 1 0.9496 1.5366 1.6281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088414268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:29 Heat of formation + Delta-G solvation = -8.637484 kcal Electronic energy + Delta-G solvation = -32405.402806 eV Core-core repulsion = 28306.181476 eV Total energy + Delta-G solvation = -4099.221329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04688 -40.28074 -38.26952 -37.23746 -34.63493 -34.12237 -32.83350 -32.63530 -31.81673 -30.35265 -29.64824 -27.17765 -26.25321 -25.00135 -24.03520 -23.59992 -22.99680 -22.02136 -21.48569 -19.64438 -18.88557 -18.41720 -17.35526 -17.08943 -16.61100 -16.08125 -15.85402 -15.78047 -15.60965 -15.00685 -14.65425 -14.32168 -14.26808 -13.93874 -13.68150 -13.48622 -13.39172 -13.25807 -13.19488 -12.83554 -12.60943 -12.42136 -12.19931 -12.14192 -11.77740 -11.65958 -11.42051 -11.29099 -11.04278 -10.86683 -10.82188 -10.68486 -10.46041 -10.27799 -10.22716 -10.14924 -9.80947 -9.78073 -9.69763 -9.49560 -8.96909 -8.66242 -8.25581 -7.06508 -5.85160 -3.15279 0.97052 1.07825 2.52548 2.72528 3.38890 3.43801 3.44665 3.49660 3.61456 4.12072 4.47481 4.57120 4.64718 4.82361 4.90469 4.93588 4.97194 5.03014 5.08097 5.11110 5.13126 5.36690 5.41925 5.44600 5.50862 5.56999 5.62382 5.64668 5.69459 5.76114 5.80086 5.85419 5.92319 5.96200 5.97969 6.04939 6.12214 6.21205 6.24408 6.26079 6.28688 6.38103 6.53222 6.60868 6.69454 6.79039 6.94614 7.11379 7.60000 7.64564 7.69729 8.30454 8.33921 9.44461 9.99429 10.34206 11.36744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.003453 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.770591 B = 8107.230908 C = 9828.493917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.113 0.887 4 O -0.278 6.278 5 C 0.325 3.675 6 C -0.192 4.192 7 C -0.042 4.042 8 C -0.217 4.217 9 C 0.143 3.857 10 N -0.539 5.539 11 C 0.517 3.483 12 O -0.534 6.534 13 N -0.591 5.591 14 C 0.117 3.883 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.126 4.126 19 C 0.157 3.843 20 H 0.070 0.930 21 N -0.718 5.718 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 C 0.071 3.929 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.385 0.615 49 H 0.257 0.743 50 H 0.074 0.926 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -11.224 -15.016 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.131 0.869 4 O -0.184 6.184 5 C 0.146 3.854 6 C -0.212 4.212 7 C -0.067 4.067 8 C -0.238 4.238 9 C -0.013 4.013 10 N -0.263 5.263 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.324 5.324 14 C -0.005 4.005 15 C -0.174 4.174 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.164 4.164 19 C 0.047 3.953 20 H 0.087 0.913 21 N -0.359 5.359 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.054 4.054 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.566 -11.658 -14.074 18.342 hybrid contribution 0.645 0.712 -0.258 0.995 sum 2.211 -10.946 -14.332 18.169 Atomic orbital electron populations 1.22390 0.92335 1.03618 1.04435 1.22140 0.95966 0.98126 0.82513 0.86918 1.86358 1.79719 1.34591 1.17732 1.19947 0.90887 0.87448 0.87131 1.21081 1.06463 1.02203 0.91487 1.21399 0.94293 0.93473 0.97559 1.21980 1.05559 0.96188 1.00029 1.22485 0.92223 0.99354 0.87224 1.67322 1.21664 1.04678 1.32595 1.20069 0.79227 0.86253 0.84134 1.90672 1.44137 1.20198 1.86043 1.47785 1.64400 1.14978 1.05269 1.21419 0.97943 0.94240 0.86884 1.21947 0.95871 0.97722 1.01882 1.21843 0.95839 1.00291 0.98467 1.21773 0.99565 0.95663 0.98834 1.22091 0.98650 0.94382 1.01300 1.20916 0.92343 0.87861 0.94226 0.91276 1.42399 1.32722 1.06953 1.53819 1.19151 1.05428 0.94201 1.18912 0.91221 1.24736 0.98316 0.96779 1.00597 1.69641 1.31032 1.09252 1.47723 0.86308 0.80635 0.78477 0.80980 1.21207 1.21672 1.21207 1.22963 0.99818 0.80426 1.02209 0.88958 0.90991 0.91413 0.84077 0.84247 0.84595 0.82212 0.91467 0.88858 0.91295 0.90962 0.90333 0.92589 0.92897 0.91913 0.91375 0.92372 0.78090 0.93343 0.90746 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.08 37.16 0.30 -1.93 16 2 C 0.07 1.08 2.04 -27.88 -0.06 1.03 16 3 H 0.11 1.73 6.00 -51.93 -0.31 1.42 16 4 O -0.28 -4.33 9.33 -38.29 -0.36 -4.69 16 5 C 0.32 4.44 7.45 -17.12 -0.13 4.31 16 6 C -0.19 -2.09 10.04 -39.28 -0.39 -2.48 16 7 C -0.04 -0.35 10.17 -39.31 -0.40 -0.75 16 8 C -0.22 -1.78 10.10 -39.44 -0.40 -2.18 16 9 C 0.14 1.45 11.18 -17.56 -0.20 1.26 16 10 N -0.54 -7.13 8.65 -13.33 -0.12 -7.24 16 11 C 0.52 8.53 5.50 -10.99 -0.06 8.46 16 12 O -0.53 -10.21 15.52 -14.01 -0.22 -10.43 16 13 N -0.59 -9.12 1.70 -174.68 -0.30 -9.42 16 14 C 0.12 1.69 5.13 -4.40 -0.02 1.66 16 15 C -0.14 -1.79 5.55 -26.92 -0.15 -1.94 16 16 C -0.13 -1.66 5.49 -26.60 -0.15 -1.80 16 17 C -0.12 -1.61 5.25 -26.52 -0.14 -1.75 16 18 C -0.13 -1.93 4.80 -26.30 -0.13 -2.05 16 19 C 0.16 2.78 2.29 -67.76 -0.16 2.62 16 20 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 21 N -0.72 -16.38 5.12 -53.26 -0.27 -16.65 16 22 C -0.25 -6.33 9.88 -15.06 -0.15 -6.48 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 26 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 30 C 0.07 1.18 5.09 -4.44 -0.02 1.16 16 31 H 0.09 1.20 3.34 -51.93 -0.17 1.02 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 34 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 39 H 0.09 1.35 6.06 -51.93 -0.31 1.03 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.07 6.39 -51.93 -0.33 0.74 16 42 H 0.08 1.12 5.47 -51.93 -0.28 0.84 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.87 3.43 -51.93 -0.18 0.69 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 0.85 6.04 -51.93 -0.31 0.54 16 48 H 0.39 9.45 7.80 -40.82 -0.32 9.14 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 51 H 0.08 1.20 4.19 -51.93 -0.22 0.98 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -31.18 382.77 -9.33 -40.51 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -7.20 Total: 12.80 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.34 Total: -1.16 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.04 Total: -59.29 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.57 Total: -15.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.18 -9.33 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.877 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds