Wall clock time and date at job start Wed Apr 1 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46886 * 2 1 4 4 O 1.42901 * 109.46629 * 240.00805 * 2 1 3 5 5 C 1.35673 * 117.00044 * 90.00167 * 4 2 1 6 6 C 1.38926 * 119.68692 * 179.72695 * 5 4 2 7 7 C 1.38374 * 119.11465 * 179.74898 * 6 5 4 8 8 C 1.38830 * 118.48162 * 0.51234 * 7 6 5 9 9 C 1.38040 * 119.29478 * 359.72608 * 8 7 6 10 10 N 1.31970 * 120.83185 * 0.02752 * 9 8 7 11 11 C 1.50700 * 109.47366 * 120.00989 * 2 1 3 12 12 O 1.21275 * 120.00071 * 107.03620 * 11 2 1 13 13 N 1.34777 * 119.99248 * 286.75518 * 11 2 1 14 14 C 1.46970 * 120.35907 * 174.52955 * 13 11 2 15 15 C 1.51799 * 109.39791 * 291.89499 * 14 13 11 16 16 C 1.53800 * 109.06114 * 287.19662 * 15 14 13 17 17 C 1.52442 * 109.40357 * 77.78510 * 16 15 14 18 18 C 1.53949 * 110.73561 * 246.27379 * 17 16 15 19 19 C 1.52880 * 109.72861 * 44.36427 * 18 17 16 20 20 H 1.08996 * 109.50523 * 312.91806 * 19 18 17 21 21 N 1.46505 * 109.48864 * 192.87136 * 19 18 17 22 22 C 1.36929 * 120.00023 * 155.08834 * 21 19 18 23 23 H 1.08001 * 120.00550 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99756 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00139 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46991 * 60.00584 * 26 24 22 28 28 H 1.48508 * 109.46750 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47470 * 300.00004 * 26 24 22 30 30 C 1.45332 * 120.37384 * 354.80328 * 13 11 2 31 31 H 1.09002 * 109.46938 * 305.35586 * 1 2 3 32 32 H 1.08995 * 109.47606 * 65.35560 * 1 2 3 33 33 H 1.08998 * 109.47120 * 185.36541 * 1 2 3 34 34 H 1.08007 * 120.43996 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.75884 * 180.23864 * 7 6 5 36 36 H 1.08000 * 120.34856 * 179.70536 * 8 7 6 37 37 H 1.08001 * 119.58855 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.53635 * 51.52940 * 14 13 11 39 39 H 1.08998 * 109.52958 * 171.75197 * 14 13 11 40 40 H 1.08994 * 109.61283 * 167.29281 * 15 14 13 41 41 H 1.09003 * 109.58500 * 47.07961 * 15 14 13 42 42 H 1.09001 * 109.47924 * 317.80789 * 16 15 14 43 43 H 1.08999 * 109.48444 * 197.76736 * 16 15 14 44 44 H 1.09000 * 109.22470 * 125.95154 * 17 16 15 45 45 H 1.09001 * 109.19373 * 6.57712 * 17 16 15 46 46 H 1.09006 * 109.42986 * 284.29041 * 18 17 16 47 47 H 1.08996 * 109.43378 * 164.44761 * 18 17 16 48 48 H 0.97005 * 119.99461 * 335.08923 * 21 19 18 49 49 H 0.97000 * 120.00109 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.67392 * 256.39706 * 30 13 11 51 51 H 1.09004 * 109.67151 * 16.92405 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2115 0.0832 -2.2742 6 6 2.6794 -0.5135 -3.4382 7 6 2.8796 0.2685 -4.5621 8 6 2.6136 1.6285 -4.4783 9 6 2.1555 2.1550 -3.2873 10 7 1.9694 1.3827 -2.2335 11 6 2.0324 -0.7106 1.2303 12 8 2.5246 -1.8148 1.1343 13 7 1.9397 -0.1165 2.4365 14 6 2.3155 -0.8470 3.6552 15 6 1.3193 -1.9660 3.8997 16 6 -0.0082 -1.3594 4.3849 17 6 -0.7650 -0.7798 3.1953 18 6 -0.8667 0.7522 3.3079 19 6 0.4851 1.3296 3.7281 20 1 0.8812 0.7560 4.5660 21 7 0.3154 2.7282 4.1302 22 6 1.2049 3.3039 4.9976 23 1 2.0317 2.7272 5.3851 24 6 1.0438 4.6289 5.3789 25 7 0.0359 5.3316 4.9071 26 14 2.2568 5.4141 6.5628 27 1 3.6197 5.3733 5.9744 28 1 1.8653 6.8254 6.8087 29 1 2.2492 4.6679 7.8466 30 6 1.4616 1.2514 2.5472 31 1 -0.3633 0.5947 0.8382 32 1 -0.3634 0.4285 -0.9340 33 1 -0.3633 -1.0231 0.0961 34 1 2.8799 -1.5744 -3.4669 35 1 3.2389 -0.1683 -5.4821 36 1 2.7639 2.2678 -5.3357 37 1 1.9474 3.2124 -3.2167 38 1 3.3106 -1.2743 3.5318 39 1 2.3138 -0.1640 4.5046 40 1 1.7093 -2.6436 4.6590 41 1 1.1518 -2.5150 2.9730 42 1 0.1959 -0.5683 5.1064 43 1 -0.6114 -2.1351 4.8566 44 1 -1.7682 -1.2050 3.1665 45 1 -0.2394 -1.0380 2.2759 46 1 -1.6191 1.0118 4.0527 47 1 -1.1545 1.1684 2.3426 48 1 -0.4270 3.2462 3.7818 49 1 -0.0768 6.2574 5.1738 50 1 2.3034 1.9215 2.7219 51 1 0.9496 1.5366 1.6281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088414268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:28 Heat of formation + Delta-G solvation = -27.072466 kcal Electronic energy + Delta-G solvation = -32406.202207 eV Core-core repulsion = 28306.181476 eV Total energy + Delta-G solvation = -4100.020730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.16510 -41.32470 -39.37540 -38.49545 -36.24662 -35.37872 -34.21900 -33.48299 -33.18408 -31.55957 -30.85847 -28.63104 -27.50965 -26.29917 -25.40518 -24.57639 -24.13168 -23.09537 -22.81097 -20.96167 -19.98767 -19.50991 -19.17116 -18.39854 -17.64218 -17.08634 -17.00121 -16.90247 -16.71682 -16.49317 -15.88316 -15.51577 -15.45973 -15.19039 -15.09007 -14.87868 -14.53571 -14.37098 -14.21555 -14.03252 -13.86663 -13.72761 -13.44151 -13.10329 -12.96968 -12.87900 -12.81422 -12.75610 -12.53188 -12.34068 -12.21738 -12.10827 -11.92405 -11.75141 -11.49787 -11.42712 -11.16190 -11.01790 -10.90470 -10.65591 -10.56195 -9.62348 -9.51282 -8.96748 -7.91183 -5.19504 0.19051 0.32643 1.37164 1.45500 1.50692 1.51641 1.57149 2.32983 2.59012 2.81689 3.26236 3.29670 3.41695 3.74216 3.81713 3.84008 3.91003 4.03410 4.04205 4.09354 4.10604 4.18515 4.21982 4.23858 4.33394 4.37932 4.49874 4.52155 4.58155 4.62633 4.67817 4.75328 4.79946 4.85337 4.93482 4.97896 5.02081 5.06820 5.12790 5.20648 5.27489 5.31238 5.38282 5.41383 5.47187 5.55411 5.56899 5.67393 6.14823 6.29903 6.32973 6.86124 7.00958 7.37962 8.11464 8.35066 9.31452 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.003453 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.770591 B = 8107.230908 C = 9828.493917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 H 0.104 0.896 4 O -0.300 6.300 5 C 0.289 3.711 6 C -0.201 4.201 7 C -0.035 4.035 8 C -0.202 4.202 9 C 0.123 3.877 10 N -0.566 5.566 11 C 0.518 3.482 12 O -0.561 6.561 13 N -0.584 5.584 14 C 0.111 3.889 15 C -0.127 4.127 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.118 4.118 19 C 0.158 3.842 20 H 0.072 0.928 21 N -0.728 5.728 22 C -0.237 4.237 23 H 0.076 0.924 24 C -0.068 4.068 25 N -0.965 5.965 26 Si 0.963 3.037 27 H -0.281 1.281 28 H -0.299 1.299 29 H -0.279 1.279 30 C 0.086 3.914 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.052 0.948 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -12.123 -16.413 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.122 0.878 4 O -0.207 6.207 5 C 0.111 3.889 6 C -0.222 4.222 7 C -0.060 4.060 8 C -0.222 4.222 9 C -0.032 4.032 10 N -0.290 5.290 11 C 0.305 3.695 12 O -0.440 6.440 13 N -0.317 5.317 14 C -0.010 4.010 15 C -0.165 4.165 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.156 4.156 19 C 0.049 3.951 20 H 0.089 0.911 21 N -0.368 5.368 22 C -0.369 4.369 23 H 0.094 0.906 24 C -0.261 4.261 25 N -0.615 5.615 26 Si 0.793 3.207 27 H -0.208 1.208 28 H -0.225 1.225 29 H -0.205 1.205 30 C -0.039 4.039 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.195 0.805 36 H 0.190 0.810 37 H 0.196 0.804 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.207 0.793 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.951 -12.595 -15.479 20.051 hybrid contribution 0.588 0.948 0.038 1.116 sum 2.539 -11.647 -15.441 19.507 Atomic orbital electron populations 1.22296 0.91025 1.03726 1.04598 1.22028 0.96859 0.97202 0.82174 0.87821 1.86312 1.80566 1.35505 1.18276 1.20257 0.93270 0.87999 0.87341 1.21362 1.06334 1.03000 0.91462 1.21880 0.92848 0.93404 0.97896 1.22402 1.02992 0.96606 1.00153 1.22986 0.92624 1.00131 0.87497 1.67243 1.22580 1.04891 1.34285 1.20350 0.78587 0.85891 0.84630 1.90650 1.45461 1.21431 1.86433 1.47734 1.63939 1.14410 1.05649 1.21563 0.98507 0.94629 0.86307 1.21874 0.95621 0.97230 1.01816 1.21816 0.95930 1.00428 0.97958 1.21741 1.00695 0.93997 0.98866 1.21991 0.96637 0.95777 1.01232 1.21075 0.94073 0.85405 0.94558 0.91064 1.42542 1.31921 1.08741 1.53552 1.19507 1.05224 0.94173 1.17963 0.90623 1.25424 1.00146 0.97658 1.02862 1.69783 1.32967 1.09093 1.49656 0.85374 0.78833 0.77098 0.79411 1.20753 1.22529 1.20513 1.22617 0.98630 0.80660 1.02016 0.89000 0.90522 0.91173 0.83416 0.80500 0.81050 0.80391 0.91585 0.88903 0.89265 0.92318 0.91484 0.90674 0.91130 0.92338 0.92215 0.91771 0.79300 0.94119 0.92995 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.08 71.98 0.58 -3.56 16 2 C 0.08 2.36 2.04 29.85 0.06 2.42 16 3 H 0.10 3.30 6.00 -2.39 -0.01 3.29 16 4 O -0.30 -9.55 9.33 -71.19 -0.66 -10.21 16 5 C 0.29 7.95 7.45 84.80 0.63 8.58 16 6 C -0.20 -4.18 10.04 22.47 0.23 -3.96 16 7 C -0.04 -0.48 10.17 22.44 0.23 -0.26 16 8 C -0.20 -2.70 10.10 22.36 0.23 -2.48 16 9 C 0.12 2.33 11.18 84.63 0.95 3.27 16 10 N -0.57 -14.96 8.65 -308.95 -2.67 -17.63 16 11 C 0.52 17.25 5.50 87.66 0.48 17.73 16 12 O -0.56 -21.68 15.52 15.70 0.24 -21.43 16 13 N -0.58 -18.07 1.70 -824.96 -1.40 -19.47 16 14 C 0.11 3.16 5.13 85.90 0.44 3.60 16 15 C -0.13 -3.18 5.55 30.47 0.17 -3.01 16 16 C -0.12 -3.01 5.49 30.68 0.17 -2.84 16 17 C -0.11 -2.91 5.25 30.73 0.16 -2.74 16 18 C -0.12 -3.52 4.80 30.87 0.15 -3.37 16 19 C 0.16 5.55 2.29 45.10 0.10 5.66 16 20 H 0.07 2.52 3.29 -2.39 -0.01 2.51 16 21 N -0.73 -33.48 5.12 -322.43 -1.65 -35.14 16 22 C -0.24 -12.22 9.88 84.04 0.83 -11.39 16 23 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 25 N -0.96 -56.48 13.06 21.65 0.28 -56.19 16 26 Si 0.96 44.53 29.55 68.60 2.03 46.56 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 C 0.09 2.88 5.09 86.75 0.44 3.33 16 31 H 0.09 2.35 3.34 -2.39 -0.01 2.34 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.78 7.77 -2.39 -0.02 1.76 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.07 1.89 8.03 -2.39 -0.02 1.88 16 39 H 0.09 2.63 6.06 -2.39 -0.01 2.62 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.67 6.39 -2.39 -0.02 1.66 16 42 H 0.07 1.81 5.47 -2.39 -0.01 1.80 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.55 3.43 -2.39 -0.01 1.54 16 46 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.06 1.83 6.04 -2.39 -0.01 1.82 16 48 H 0.37 18.72 7.80 -92.70 -0.72 18.00 16 49 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.05 1.98 8.09 -2.38 -0.02 1.96 16 51 H 0.08 2.68 4.19 -2.39 -0.01 2.67 16 Total: -1.00 -68.48 382.77 2.73 -65.75 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: 0.25 Total: 40.04 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.31 Total: 7.72 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -5.44 Total: -128.43 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.42 Total: -31.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.48 2.73 -65.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.675 kcal (2) G-P(sol) polarization free energy of solvation -68.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds